Array 1 3399222-3399071 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT605203.1 Thiomonas sp. X19 chromosome THIX, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3399221 29 100.0 32 ............................. AGTTCAATCGATGTTTAGGTTACAGTCCCGAC 3399160 29 96.6 32 ............................A TAGGCGTGACGACTCAAGGGCGAGCATACGCC 3399099 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGCGCTGGCGGGGATGAACCG # Left flank : TCAGCCGATTGCTGGGTACGGTGGGAACGAGCCGGTCTTCCCTGTTCGAACCGTGCTTTGGGGCAAGACCCGCAAGCGCTGCCCAATCCCGAGCCCCTGGACCACTATCTGGCGCGCATTGAACGCGACTACCTGCAACATTGTGTGTCTCAGAATCACGGCCAGATGATGAAGACTGCCAACAGCCTGGGCATCAGTCGCAAAACGTTGTGGGAAAAACTCAAGCGCTACAAGATGGAGGGGCAGAACACAAGCAACGTATCTTGAATCCAAAGCGAATTTCATCGCTTTGGCAGGCCAGTTCCCACGACCGTCATTTTCCTGTGCATTGCAAGGCTCGCGGCGGTGGGCAATCCAGCAGCCTCAAGCCAGCGTCTGAAAGCTCCCAAGCGATAGCCGAGAAATTCCGCGACGGAACGCATCCATGCCATGTAAGTGATTGATTTACTCAGCAGTCGATAAATAAGTCGACAAAAAGGAAACAACAAGTTGTGATAAGT # Right flank : TAGCGGCCTTCGTCGCCGATCCTGTACGACGACACCCCAATCCACTGTTTTCGTGAACGATTGGATCGAGTACGCACCCGCCCTGGATTCAACGGGTTAGCGTTCTCGATAGCGTTGCTCGATTGATGGTCACCACCTGGCGTAACGCCAGTTGAGTTTCGAGAACGTCAAAGAAACACGGCGGGCGACACCGAAAACCTGTTTGCCAGTGCGCGAGCCTGGCGTGCGTTGATCTCGCGCTTGCCATGCAGGATGTCGCTCACCGCCGACTGCCCGCCGATCTCCTCGGCCAGGTCAGCCTGCTTGAGCGCATGTTGCTCCATGAAAAAGCGCAGCACCTCGTGTGGAGGCGCATCGGGGACGGCGTGACGGGTGTTTTCATAGTCCTCGACCAACTGACCAACTAGGTCCAGAAACTCAGCCAGTTCGTGCCCTTCATGGTCGCCTACAACATCGAGCAGACCATTCATCAAGGCCACGGCTTGCTCATACTGCGCTTC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3436690-3436510 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT605203.1 Thiomonas sp. X19 chromosome THIX, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 3436689 37 100.0 34 ..................................... TGTTTACACGGGCTCGTCTTCCACCACAGGGAAC 3436618 37 100.0 35 ..................................... AGATGCAGTGGCAGAAAGCCCACGGTGGCGTAATT 3436546 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 35 GTCTCGCTCGGGTTAAAACCCGGGCGTGGATTGAAAC # Left flank : TGACGATGAACGTGCTGCGCCTCATGGGGCAGCAAGGGCTGCTGGGGCCGCATGCACCGGTGCGCCATGCGGCCAGGCGACGGCGTCTGAAGACTGTGATCCAGGAACTTGTCATCCGCGCAGCACGCGTGATCAACCATGGCGGGCGGCTGTGGTTGGGACTGGGCGCCAACGACAAGGCAGCCCGTGCCTTTTGCGATCTGCATGCGCAGTTCGCCGCCAGCGGCTGAAGACGCAGTCCAAGCTTTCCCAGCACCCCAAGACGCTGGCCACAAGGGCTCAGCGGGGGAACGGCTGCGCGCAACCCACCCGAAATGACCGATCAAGGGGGCCGATCGTTCGCGCACAGCCCCACAGCCCCCTTCGACACGGCGCTCGAACCGTGAACCTGCGGGAAATCGGGAAAATCGGGCCGTCACAATCAGCTTTCAAGTCGATGGATTATCGGAAGTCACGGATTCAGGACGACTATCAACAAGCATTGGTCAAGTGGGCGCTAC # Right flank : ACGTGGAATATTTGATTCACGTCAAAAGGGCGCGATACACAGGCGCCTATCGTGTCCCCATCGCATGAAAACATCACGGGGCACAAAATGAACACCTCCGAGAACCTAACCGCTGGGACAGCAGACCGGCGCGGTTTTCTTCGCAGGGCTCTGGGCACGACAGCCGCCACGGTGGCAACTGCGGCCGCAGTTGCCATGGATTGGCCAGCAACTGTCGCGGCGCAAGAGGTCAAGCAGCCGGGGGATGATGCCTTCGGCAATCTTCCCGCATCGCTCACTCCGTCGGGCACCGACTATGAATTGGGGCATGACCGCTCGGCCTATGCCTACACCGCCAAAGACGGCAACCTCGCCAAGGAAGGGTTCGAGGGCAAGCGCTGGGGCATGCTGATCGATCTGCGCAAGTGCGTCGGCTGCCAGGCTTGCACGGCTGCGTGCAAGTTCGAGAACAACATCCCTACCGGCGTGTTCCGCACCTGGGTGCCGGACGTGGAACTGGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCTCGGGTTAAAACCCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 3 3443977-3438475 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT605203.1 Thiomonas sp. X19 chromosome THIX, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3443976 37 100.0 36 ..................................... ACCCGTGGCGTGAACGGTTGGCACCCTCACATTCAC 3443903 37 100.0 35 ..................................... CTTCCAAGCCTTGATTTTTCGGGGGTTCTATGTCA 3443831 37 100.0 35 ..................................... ATGTCAAAGCACAAGCACGGCAAGCACGAAGAAAA 3443759 37 100.0 35 ..................................... GAGCAGAGGCGATTGAGTGTCCATGGCGGTGTTCT 3443687 37 100.0 36 ..................................... CTCATGCTGCCGGATACCCCGGATTCTCTGCAGGTC 3443614 37 100.0 36 ..................................... ATCGCAGGAACCCAAAAGCGAAGCCGAGCAAAGCAA 3443541 37 100.0 35 ..................................... GGGAGGGTGATGCCCTTTGGCAGCCAGAGCAAGAC 3443469 37 100.0 37 ..................................... CACCCATGCGTTGAGCGAGTTCGCTCCCGCTGACGTC 3443395 37 100.0 35 ..................................... ATCGCTCTCCTCAATGGCGGCAATCAACGCCGATC 3443323 37 100.0 34 ..................................... TCGATGCCAGCGACGGCATCCCCTGCAACCCCCC 3443252 37 100.0 36 ..................................... GATCACGGAAGTGACGAATAGTACGACGAACACCAG 3443179 37 100.0 34 ..................................... TCAACAAAGACGCCCTGCGGGCGACTTGTTGTAA 3443108 37 100.0 35 ..................................... GATGCGATCGTGCATGGAGCATCACCCAGCGCAAA 3443036 37 100.0 35 ..................................... CATTTTTGGAAGCGCGAACGAGCCTGGAGCTCGGC 3442964 37 100.0 35 ..................................... CATTTTTGGAAGCGCGAACGAGCCTGGAGCCCGGC 3442892 37 100.0 34 ..................................... ATGGGTTGAAGGGATCAAAACATGGGTGCAGCAT 3442821 37 100.0 34 ..................................... GCGCTCATGCGTGTCGAAACCGACCGTAAGGCCG 3442750 37 100.0 35 ..................................... CCTTCGCGGTCGTGCCTGAGGGATACCGCATCGAA 3442678 37 100.0 34 ..................................... GTCAAGGGCAGCTTGCATGCGGTGGTGGTGTTCC 3442607 37 100.0 34 ..................................... TCTATAGACCCATCACATTCGCACTTTCACCCGC 3442536 37 100.0 35 ..................................... ACGCCAGGCTGCATCACCCTCGCGCACATGCCCTG 3442464 37 100.0 34 ..................................... GTACTGTGACGCCTAGCTTGGTTTGCTTCGCGCC 3442393 37 100.0 35 ..................................... GTCAGCCTGTTTTGGCTCCTGCGGGACCTGTTATT 3442321 37 100.0 35 ..................................... ACCAATGACGTGGTGAAGCTCTGCGATGCGCCGTG 3442249 37 100.0 36 ..................................... AACTCTGTGAACGACTTTCCCAAGGCCGTGGCGCGC 3442176 37 100.0 36 ..................................... CATATCAGGCTCGACGATGATCGTGTACCCATCCGG 3442103 37 100.0 34 ..................................... TCATCGCCGACGAGCTGCGCGCGCATGGCCTGGC 3442032 37 100.0 35 ..................................... TACGACTTCGTGAGCTGGCCTGGCGGCAGCAAAGC 3441960 37 100.0 36 ..................................... ATTCAGGGCATGTGCGCCCGTGTCATGCAGCCTGGC 3441887 37 100.0 35 ..................................... ATCGCTCTCCTCAATGGCGGCGATCAACGCCGATC 3441815 37 100.0 34 ..................................... CTCGTGGATACCATGCTGGCAGCGGCGAAGGATC 3441744 37 100.0 36 ..................................... CGATTGGTTGGACGAACGGTTGGAATCTGGGACTGA 3441671 37 100.0 37 ..................................... CTGGACAAGGCGGTGGCCAAGCTCGGAGCCCCCAAGC 3441597 37 100.0 35 ..................................... GGCATAGAGGCCCGGGGTCTGCGGGTTGTCGCCGA 3441525 37 100.0 35 ..................................... ATGGTGACGCCGGCGATGTGCTGGCCGCCCTCGGC 3441453 37 100.0 35 ..................................... AACACCAGTCTGAGCGTCGAGCAGGCCACGGCGTT 3441381 37 100.0 35 ..................................... GCATTCGGCGCTGATCTTGCCGCCGATGCTCTGCT 3441309 37 100.0 34 ..................................... AACGTCACCGTGGCCGCAGGCTCAGGCAACTACA 3441238 37 100.0 36 ..................................... CCTTCGCGGTCGTGCCTGAGGGATACCGCATCGAAC 3441165 37 100.0 34 ..................................... GTGACAGACGCGCGGCGTGGCCAGGTCGTGGATC 3441094 37 100.0 36 ..................................... GTGCTGCTCCACCACGACACACGCTGGCTGGTCGAC 3441021 37 100.0 35 ..................................... ACCGTTGGCACCGTGCTGGGCCATCGAGACCCGCG 3440949 37 100.0 34 ..................................... ATAATGAAACTCGTTGAATCCCGTGGCTCTCTGG 3440878 37 100.0 35 ..................................... GAAATCTCCGGTTGTTTTGGCGCGTGCGACTTTTT 3440806 37 100.0 35 ..................................... CATTGATGGTGATGCCGCCACGCTTGACGATGTAC 3440734 37 100.0 34 ..................................... TGCTCGAAGGGAACTTCAGGGCGTTCGCCCTTGC 3440663 37 100.0 35 ..................................... AATGAATGCGGCGTCCTAGCTGCTGTCTATACGTC 3440591 37 100.0 35 ..................................... TCGCTGAACTTGCGCAGGCCATCGGCCATGCGCTG 3440519 37 100.0 35 ..................................... TGAATGAAAAGCGGCATTGACAACGGAGGCTATGG 3440447 37 100.0 35 ..................................... ATCGATGCCGATCTGCACCACGTTCGAGGTCTTTG 3440375 37 100.0 35 ..................................... GTTGTGGTTGCGTTCATGGTGCTCTCCTGTTGGTA 3440303 37 100.0 35 ..................................... TGAATGGAAAGCGGCATTGACAACGGAGGCTATGG 3440231 37 100.0 34 ..................................... AACTCACCGACGCAGGATTGATGAGCCGAGAAAC 3440160 37 100.0 34 ..................................... CATCGTGCCGTCGGCCAGCGCGCACTGCATGGTG 3440089 37 100.0 34 ..................................... ACCTGAAACCAGAGCGCCTGCTGCAATACGCGGA 3440018 37 100.0 36 ..................................... CAGGATTGTTGTTGCGTGTGCTGCGCGGCAGTGGGC 3439945 37 100.0 36 ..................................... CAGCAGTTCGAGACCTCATTGTCGGACCTCGATACG 3439872 37 100.0 35 ..................................... CAAAATCAAATGGCACTTGGCCGATCCAGAATGTG 3439800 37 100.0 35 ..................................... ATCCAGCGCTGTGCGTTGCCGCAAGACATCACGGC 3439728 37 100.0 35 ..................................... TGCAAACCCACTTGCACCGCACCTGCAATATCAGG 3439656 37 100.0 35 ..................................... ATGCCGATGAAGAACGGTGCAACCTCAGATGCAAG 3439584 37 100.0 37 ..................................... GCCATGAACCAGCCTGACACCGAGACCAGAAACGGTG 3439510 37 100.0 34 ..................................... GGATTAACCGAAGAACATCGCCTTGCCCCACTTG 3439439 37 100.0 35 ..................................... GCGTCGGTCGTGACCTCAACCCAGGTGGGATTTCC 3439367 37 100.0 35 ..................................... CGCGATCCAGCTACGCCGCGCCCATCCTGCCGCAC 3439295 37 100.0 34 ..................................... AACCCATGCCCGATGGTTGCCGATCCGTCCACCG 3439224 37 100.0 34 ..................................... GAACTTGCGGCTTGAGCATCCGCTCGCTCATGCT 3439153 37 100.0 33 ..................................... AGCGTGTGCACGCATGCGCCAGCCGTCGTCGAA 3439083 37 100.0 34 ..................................... ACACGTCGCCGGAATCTGGCGACAAGGTCACACG 3439012 37 100.0 34 ..................................... CCCTGGATCATGCGGCAGTACCTGGCGCTGGAAG 3438941 37 100.0 34 ..................................... GCCTCCGGGCGGTTTTTTTATTGACGAATCCAAA 3438870 37 100.0 34 ..................................... TCACTGAGCGTGCCGACGGATTGCGCCAGGATGC 3438799 37 100.0 34 ..................................... GAGTCAGCGCTGGAAGGCGCGTATTACGGCCAGT 3438728 37 100.0 35 ..................................... GAGTATTACGCCCAGGCACAGCAGCCGTGGGCACT 3438656 37 100.0 36 ..................................... ACGGTGGTCAACGCCGTTACGCCAGCCCTGTCCAAG 3438583 37 100.0 35 ..................................... GACCCGCTCGGCTTGTAAAGCACTTCAGCGCCAAG 3438511 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 77 37 100.0 35 GTCTCGCTCGGGTTAAAACCCGGGCGTGGATTGAAAC # Left flank : CTATCTGGCCCGGTAATCGACCACAAGACACCATGCTCATCATCGTGACCTATGACGTCTCGACCGAAACAGCTGCAGGCCGCAAACGTCTGCGGCGCGTAGCCAAGGCCTGTGAAAGGGTGGGACAACGCGTGCAGAAATCCGTGTTCGAATGTCAGGTCGATGCCATGGAATACGAAGCCCTTGAACGCGAACTGCTCGCCGAAATCAAGCTGGACGAAGATAATCTGCGCTTCTACCGCATCACCGAACCGACCGAACTGCGCGTCAAGCAATATGGCACCTTCCGTTCCATCGACTTCAACGGCCCGCTTGTCGTGTAGCCCGCGAACCCCGAGCAAAGCCGAAATCCCGGCCGGTTCGCGCATCACGCAAATCCTTGATCTTTCACAATTTGATGAATTTTCCTTGCCTGCGAATCCGGGTCTGCCTGAACGGAGAACCCAGTTCGCGGGAATGCAGAACAACTCCGTTGCGCAGCAACACGTTGCGCGAGTGGA # Right flank : CCGCAAGCTGATGCAAATATCTCAATTGCAAATTACCTAAATCCGTGAGCTCGGGCATGCGGAATTTTCATAAGTTGTTGATGCATAATGGTTTATTCGATAAAATGACCCCTTTGTCTTCTCACCCAGCGGGTGAACGTTCCGGGGTATGGCATGGGGTTTGGATTTCGCGTCAAGCAACTCGACTATGACCTGACGCCGGTGGCCGGTCTGGCCCTTGTCGGTCATCACCTCAAGCGCCTCGATCCTCTGTTCAAACGCCTGGATGCCCAGTGGCCTTGCCGCGGCGGACTGCCGCCCAGCACACTGATGCGCAGCTATGTTGGCTTGCTCGCGCAGAGCAAGAGCGACTTCGATGCCATCGAAGGCTTTCGAGGCGATCGTTTCTTCCAGGAGGCGCTGGGTCTGGTGGGTGTGCCGTCCTCGCCCACCCTGCGCCAGCGCCTGGATGCGCAGGCCGCCCTGTGGTTTGACTTCACCTCCCAGGCGATTGAAGCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCTCGGGTTAAAACCCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //