Array 1 7151-6790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWCU010000162.1 Methylobacterium ajmalii strain IIF1SW-B5 scaffold284_cov47841_read144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 7150 31 100.0 35 ............................... CCACATCAGCACGGCTGGCCGGGGTGAGGGGGCTG 7084 31 96.8 35 ..........T.................... GTCAGCTCTCGACATGGGATGTCTCCTTGGGTGGG 7018 31 100.0 34 ............................... TTGGGGCGGTGCTTGGCGCTCTCCATGCCGAGGA 6953 31 100.0 34 ............................... ATCACCCAGGAGGTCGAGCATGGCCGGTGATCGT 6888 31 96.8 35 ............A.................. GTCGTATTCCTCCATCACCGGCGCGTCGTGGGTAG 6822 31 80.6 0 ................C.....T.C...TGA | G,C [6793,6796] ========== ====== ====== ====== =============================== =================================== ================== 6 31 95.7 35 GTCGCCCCCTCACGGGGGCGCGGATCGAAAC # Left flank : TCGTCTGGAAGTGAGGCGGCGCCATGCTGATGCTCGTGGCCTACGATGTGAGCACCGAATCCGCCGCGGGACGCCGGCGCCTGCGCCGCGTCGCCCGTGCCTGCCTCGATGACGGCCAGCGGGTGCAGAACTCGGTCTTCGAGTGCGAGGTCGAGCCGGCCCAGTGGACCGCTCTGCGCGCCCGCCTCGTCGCCGAGATCGATCCGGCGCAGGATTCGCTCCGGTTCTACCGGCTGGGCGCCCAGGCCCGCGGCCGGATCGAGCATGTCGGCGCCAAGCCGATCCTCGACCTCGAGGGACCGCTGCTCTTCTGAGCGGCCTGCGCGAACCCCGAGCGGACAGCCCCCGCCCGGAGGATTCGCGCAGCGGTGATCCCGTTGCGGCCACACGCCTTTTCCACCCGCTTCGCCCCTGCCGCAACTCGGGCCGCCCCCCGCCGGGGGAGGTTCGCGCGCAGGCGCGATATTTCGTTTTCAGCGCAAATGGTTACTGTGGTGGCC # Right flank : TGTTGTCCTCCGGGGCGCGGTAGGCGTCGTCCTCCAGGCGCAGGCCGGTCCGGGGATCGTAGAACGCCATGTCGTCGAGGCGCAGCAGGGCGCCTTCGAGCAGGGGGTGGACGGGCCGCAGGCGCCCGAGCGCCAGCCAGCGGGCGCGCAGGGCCGGGGGAACCGGCACGACGTAGGCCTGGAGGCGGCGCAGGTCGTCGCCGAGGGGGCGGTCCATGGCGGCGATCCGCGCGAGCAGCGTCTCCGCCCGGTCGTCGTCGGGGGCGGCGCGCCAGGGCACGATGACCGGCTCCATCGCCTCGTCGATGAGGCGGAACGCCCGGGCAATGCGGGCGAAGGGGAAGGCCTGCGTCGTCGCCCGCTCGGCGAGGGCGGGCAGGATCGGCCAGGTCTCCCCGTCGAGCCGCGGCGCGTCGAGGGCGTGCTCGCCCCGGCGCCAGTAGACCTCCTGGAAATACGCCCGGATGGCGTCCGGGGCGAGCGGGTCGTCCCGCGTCCGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10172-9837 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWCU010000122.1 Methylobacterium ajmalii strain IIF1SW-B5 scaffold202_cov40537_read144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10171 28 100.0 33 ............................ GTCTTCCTCTCGTCTTTCTGCGCCCGAAGGAGG 10110 28 100.0 33 ............................ CTCGTGCTACGCGGCATCACCGCTGTAATCTCC 10049 28 100.0 33 ............................ CGACAACCGCATGAGCGTCGGCCAGAAGCTGCG 9988 28 96.4 33 .........................C.. TCCGCCCGATCCGGAGGAGATCAGGCCATGCCC 9927 27 96.4 33 ............-............... CGCGACCTTCACCAGAATCGACACGCAGCTCGT 9867 28 89.3 0 A............C...........T.. | TA,T [9841,9856] ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.0 33 GGCTCCCCCGCCTACGCGGGGATCGACC # Left flank : CCGCGTCGAGCCCCTGCCACCAGACCGGCCGGCGGCGGGGAAACCCCTTCACGTCCTCGCGCCGCAGGGGCGGCAGGTGCTCGCCGAAGCGCTGGCGATACGCCGCGTAGAGGTCGTCGCGGTGCCCCGCCTCCTCCTCCGCCATCGCCTCGAACACCCCGGCCGAGCCCGGCAGGTCGGCCCGCAGGCCCTCGGCGAAGCTGCGGTAGATGCGGGAATCCTCCTCCTCGCTGGCGATGGCGAGGGCCAGCACCTCGCGTTCGGTAAGATCGGTCAGGGCCTTCACGGGCATGCTCCAGTCTGGAATGGATCCAATCTATAGATTGGATCCATTCCAAACAAGCGCTCGCGTGCATCGCACCATCCGGGGCCGGGCGTCGCACGGACTATGACCCTCGACGGCCGGGCCGGTCTCGGGCATCCTGACACACCGCCGGTCGCTTATCTTCCCCAACGGCATCTTTGACGTCGTGAACGGTATCAGTGAGTTAGTTGGCAGA # Right flank : ACCTTGGAATGCGTGCGTTGCCGCACGCCGCTGCCCGCATCTGCGCCCGCGCGGCGGTTGCCTCGCGGGCCCGAACGGAGCATGACGGCGCCCGGATTCGCGCGGGCTTCCTTGTCGTCCCGCGGGTGCGGGGCGGCGCGGGGTCTTCTTGCCGCGCACCGAAGAGCCCGTCCTCCCGAACGAAGTGCTGCCGATGAGCGTCGTCACCCGCATCGCCCGCAGCCGGGCCGCCCAGGAAAGCCTCGGGTTCCTCGGCGCGAGCTACCTGAAGCTGGTGCAGGGCACGAACCGCTTCAGCCTCGATCCGCCCGGAGCCTACGACTGGCTCACGCCGCTGCGGCCCTTCATCATCGCGATGTGGCACGGCCAGCACCTGATGGTGCCGTTCGTGCGCCGGCCGCAGGACCGGGCCGCCACCATGGTGTCGCGCTCGGTCGACGGCGGGGTGAACACCGCGGTCCTGGAGCGGATGGGCGTGCGGGTGATCCGCGGCTCGGGCG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCCTACGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //