Array 1 25247-23892 **** Predicted by CRISPRDetect 2.4 *** >NZ_APSL01000101.1 Neisseria meningitidis 75643 gnm75643.contig.100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25246 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 25180 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 25114 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 25048 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 24982 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 24916 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 24850 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 24784 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 24718 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 24652 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 24586 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 24520 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 24454 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 24388 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 24322 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 24256 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 24190 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 24125 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 24059 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23993 36 100.0 30 .................................... AAGCCACGCAGATTACAGACAAGGTGTTGC 23927 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //