Array 1 54328-52642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBV010000012.1 Streptococcus thermophilus strain ST10 12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 54327 36 100.0 30 .................................... TGTCGTTCTATACTATCAAAGCGGTCTGAA 54261 36 100.0 30 .................................... CATAGATGGTAGAGAATTTGCATATGCCAC 54195 36 100.0 30 .................................... TATACCAGAAGATGGAAGAACAATCATAGA 54129 36 100.0 30 .................................... TTGTGTCGGTTACTATCATTTTGCCCGTTT 54063 36 100.0 30 .................................... TTCGGTATGGGCTAAACATACCAGTACCAC 53997 36 100.0 30 .................................... CCAAAGAATGGACCATCTCAATGAAAACAT 53931 36 100.0 30 .................................... TCAACAAATGTCATTGCTTTCTACTAATAT 53865 36 100.0 30 .................................... ACCTCCCGACAGACCACAGTTCGGATATCA 53799 36 100.0 30 .................................... CCAAACAATTACTGTTAGACATGCTGATGA 53733 36 100.0 30 .................................... TGCCGTCGATATTCTGCTCGATAGTTCGCA 53667 36 100.0 30 .................................... GTCACAATCTGGCGGAGCTGGTGGACATGT 53601 36 100.0 30 .................................... TATTTCTCTTTTAACAACAGATGTTTTTTT 53535 36 100.0 30 .................................... CATAGTTTCCCCGTATATAAAGTAGTTTCT 53469 36 100.0 30 .................................... AGAGGTAGCATTAGAATCTAGCCGTCTGGG 53403 36 100.0 30 .................................... TTGCCTGGCATCAAATTCACTGATGCCAAC 53337 36 100.0 30 .................................... CATAGTTTCCCCGTATATAAAGTAGTTTCT 53271 36 100.0 30 .................................... TTTAATGTGGCAAGGTGCAGAAATCTATAT 53205 36 100.0 30 .................................... AAAAGGTGACCAAGGTATACCTGGTCCTAA 53139 36 100.0 30 .................................... AAACAAAGCACAAGCCTTGGTAAGTAGCGA 53073 36 100.0 30 .................................... AAATGCACAGATAGCGCCTTTGAATATTAA 53007 36 100.0 30 .................................... TGTGTTTCTCTGAACGCCATTGACAGTCAG 52941 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 52875 36 100.0 30 .................................... CCAAAGAATGGACCATCTTAATGAGAATAT 52809 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 52743 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 52677 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTGATGTTATGACGAAATCGTCAGTATTTTTTGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 64826-66313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBV010000006.1 Streptococcus thermophilus strain ST10 6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 64826 36 100.0 30 .................................... AAGGCAGTCGGTGAAGCTGCACCTGGGCTT 64892 36 100.0 30 .................................... CAACGATTGACATTTATATACCTCCTTAAT 64958 36 100.0 30 .................................... ATTTTGACGCTCAACACACTCAAAAAGTTA 65024 36 100.0 30 .................................... AATCAGCGTAGTCCTCTTTGTCTCTAAACG 65090 36 100.0 29 .................................... CAATGTCTTAAGTCCTGACATAGCGTCTG 65155 36 100.0 30 .................................... TCTTTCTAAAGTCTAAGCACTTCCACTCAC 65221 36 100.0 30 .................................... CTCCTTCTATAATTGTTCTTCCGTTCTCTG 65287 36 100.0 30 .................................... TTTTGATGACCGCACAAAAACTGTAGTTGA 65353 36 100.0 30 .................................... GTCTAACCTATACCGTCAAAGCAAGCGATA 65419 36 100.0 31 .................................... GATGGTATTGCTGGTAAGGATGGTGTTGGGG 65486 36 100.0 30 .................................... CGCACTCCTAACTATTCTTGTGTCAGTTTT 65552 36 100.0 30 .................................... CTGGTGTGCGTGTGCTTGGTTTTGGTAACT 65618 36 100.0 30 .................................... TTTCGCCTCTTCCGCAGTAATCGAAAACGT 65684 36 100.0 30 .................................... GCATCCCTTGTTTCAATTTCTCCAATTTCA 65750 36 100.0 30 .................................... ATAAATAAAAGGACTTGCTTCCAATCCTTT 65816 36 100.0 30 .................................... TCAGCCACCGATTTATCTTTAGATGAACCT 65882 36 100.0 30 .................................... AGATCTGCTGTAATCATGTGATTATCTCCT 65948 36 100.0 30 .................................... ATCATACATGATAGTTTGTCAACACTTTTG 66014 36 100.0 29 .................................... AATTCTGCGACGTCGCACAATTTAGTGTA 66079 36 100.0 31 .................................... ATGCGAAAGAAGTTGCTGTATCTATTGACTA 66146 36 100.0 30 .................................... TACGAATAATTAAACCCGCCCACGAAAACT 66212 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 66278 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 42119-41275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBV010000016.1 Streptococcus thermophilus strain ST10 16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 42118 36 100.0 36 .................................... TTTCGTAACTGTTTAATTCTGTTCACTTATTCCACC 42046 36 100.0 43 .................................... TGACCTGGTGCATATATACCAACCAGTTTGTCTTTAACATTTT 41967 36 100.0 35 .................................... TCTTAAATCAATGTCTTACCTAAACCGTGAATTTT 41896 36 100.0 37 .................................... AACATATTATTTATCTCCATATATTTTTTTCTTTTTG 41823 36 100.0 34 .................................... GCGTTACCGTAGACCTCTGCGTTACCACTTACCT 41753 36 100.0 37 .................................... CTCCATTAAAAAAATCAGTAAAAATGCCACATTTCCA 41680 36 100.0 39 .................................... AAGTCAAAGTCTTCTATATATGTTGAGTTGGTGACCATT 41605 36 100.0 41 .................................... TGTTCCAATTTAGTAGCATTAATGAATCTGTACTTATCTAA 41528 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 41456 36 97.2 38 .......G............................ TCTTTCGACTTAGAATCGTATTCAAATTTCATGTTTTT 41382 36 100.0 36 .................................... TTAACGAAGTTGTCATCAATCATTACTCCTTGCCTG 41310 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== =========================================== ================== 12 36 98.4 38 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : GAAAATTTTGAAAACAATATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGGGTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCACGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGCGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //