Array 1 316952-318520 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPH01000001.1 Streptococcus oralis subsp. dentisani strain BCA2 D8805_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 316952 29 100.0 49 ............................. TTATTTCATCATGAAATTCGATACAATTCGGATTGATAGTGCTTAGAAT 317030 29 100.0 44 ............................. ATATTGCAAGCTGCACACTTTTTAGTTACGAAAAGTACTGGCAT 317103 29 100.0 43 ............................. ATAACGATAGGGTCATCAAATTTGCAATCCATGAATATATATA 317175 29 100.0 46 ............................. TTTTCCTTAACGTAAGCCTTATGGTATTCAACTTCCAGCTGTTTTT 317250 29 96.6 47 ...C......................... GCGTTGAATGCTGCTGCAAAGGCTTGTGCATTCTTGTTACGTTGAGT 317326 29 89.7 45 A..C...........A............. TTGCCACTTTGAGTGATGTTAGCGCCAGTAGTGATTTTCGCTCCG 317400 29 96.6 51 ...C......................... ATGCGACCCTCTGACTGGTCCATCACACGATAGGAATAATTCAGGGAAAAG 317480 29 96.6 47 ...C......................... GTGTCATGATAATCACCGTCAATCTTTATAGCATGATACTTATCACC 317556 29 58.6 20 ...C..........TCTGCATC..T..TT GTTTTAATCTTAACAATAGG Deletion [317605] 317605 29 96.6 41 ...C......................... TGTTCTGAATTTCTGCTTAATCGTTTCATGACCTACGTTTC 317675 29 96.6 49 ...C......................... TTCAGAACCCACATATAGAACTCACCTTTTGGTGACAATCCTGCTTCTT 317753 29 100.0 50 ............................. GTACGTTCTTTTTCAGAAAGAACATGGTACATATTAAAGAGCGCTTTAAC 317832 29 96.6 46 ...............A............. TATTTACAGTCCGCTGAATTACCAATTATTCTACCGGCCCTATTTT 317907 29 89.7 46 ...........T.C..............T TAGCAACAGCCCCAAGAACAACAGTAGAGATCAAAGCGATACCAAA 317982 29 100.0 49 ............................. GCCTTGTTTCTTTTTCTATTGCACTAAGTTCTTTTATGTTTTTTAGTAC 318060 29 100.0 45 ............................. CTATTAGAATATCATGGATTCTTGCTAAAATCGATGGCTCTTCTG 318134 29 100.0 46 ............................. ATTTAAGTCTTTTTAATAAAACCTTTTGCTGCTGAAATGAACAAAC 318209 29 100.0 37 ............................. GTTATGGTCTGTAGAATATTACTTTATCCTTCTTTTT 318275 29 96.6 43 ..A.......................... ATAACGATAGGGTCATCAAATTTGCAATCCATGAATATATATA 318347 29 96.6 46 ...C......................... GTTGTTCTAGAGACAGATGAATCATTATCATGAACTAAATTTTTGC 318422 29 96.6 41 ...C......................... TTTTTCGAGTTCACCACACTCGAACACACAGCACACTTTTG 318492 29 82.8 0 ...C.....................TTTT | ========== ====== ====== ====== ============================= =================================================== ================== 22 29 95.0 44 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : TGGAATCTCTTTTGAATTTGGCTTTTATCTGAACGATTGTCAGCTTTCGGATGGACCTCAGATTACGATTAAAGAAAAAATAGAGTTATTTAAAACCATCTTGACTGATGTAGGCATTGGCGCCAAAACGAATGTTGGTTTCGGACAGTTAGAGTAGTAGAGCTCAATCGACAACTGTATTTACAAATCTTATCCGAGGGTCTCGTGCAACTCACGCAGCTATTAGAGGCAAAATATGGTGATATTAGATTGGATATTATCATTTCCAGTCGTGTAGCTCGAAAAGGTATAGAGGAGCATGTCCATATTCAGGAGTCTGAATATAAGCGTTCCTTTACAACGAGTTTAAAAACAAGTGAAGTCAGCTATCGTACAGGAGTTCAATCTTAGTTGGCAAGAGCGCTAGGACAAAAAAGATCGACCGACTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTTGTT # Right flank : TATCCAACTGAAAAAAACTTGCGGGAGCAAGTTTTTTGTGGTATATTGGAAGTGTTTTCATGAGGAGATATCTTACTCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATTTAGTCACCATATCTTTGTTTTGCCCTTTGCGGCCAAGGGGCTGGAGTCTTTTCCGAAGTCTTCTAAGTGGAAGAAACTCAGCCAAGATATCAATGAGCTCCCCTATCTAAACTTAGATGATGCTGAAAAAAGCGAGCGATTAAAGTACGCTTATCGCCGATATTTTAATAAAGAAGCAGAGGAGCTGATTTTCCGCAATCCTGATCTGGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATCAACAAACTTGAGTGTTACGACCTGACGCTTGACTATATCATGCTTCGTTATTTACCAAATTTAGAAGCAGGTTTCCTGATTTTCTCAATGGAAAATCGTCTCTATGATAAA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 320277-320977 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPH01000001.1 Streptococcus oralis subsp. dentisani strain BCA2 D8805_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 320277 29 93.1 44 ..A........................C. TGTTTCCGCTTTTACTGTTCTAGCCATTTGTGTTTACCTCATTT 320350 29 96.6 43 ..A.......................... CTTCGAGCTTTTTATATTTCGATCTCTCGAAATATTCATTAGC 320422 29 93.1 43 .C.C......................... GAAGCCTACTACTTTTTTTAGGCTTCTCCTTTGGTGCATTCTT 320494 29 96.6 54 .......T..................... TCACTACGATAAGTAAGACCATGTTCATCAATATCCAACATTACCCATCTTTTC 320577 29 100.0 48 ............................. TTTTTACATTGACCGAATGTTACGTCTTTACTATCTTCCACTGAACGA 320654 29 93.1 44 ...C.C....................... TTTTGAGCTCTTTGATGAATGTTTCTAAAACCCAGTCTTCGAGT 320727 29 96.6 48 ...C......................... TCAATCGACTTTTCAAAAGGAGTGGCGTTCATCAACACTACATGGTTC 320804 29 100.0 49 ............................. GCTTCTTAAGGAATTTTTTGAATAATCTTGCGAGATGTTTTTCTTCAGC 320882 29 96.6 38 ...C......................... TTTCCTCCTTAAAGTACCTCAGTTGCCCAAGGTCTGAT 320949 29 79.3 0 ..A.......G..............GTTG | ========== ====== ====== ====== ============================= ====================================================== ================== 10 29 94.5 46 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : AGGAGCAGGCGGTGGAAATCTATGAATTGCTACAAACCTCACTCTATATCGAGAAGCATATCAATCTCCTGGACAGTCAAATCAGTGAACTGCATGCTATCAGCCAGACAGAATCAAGTAATAAATTGAATGGCAGAGTATTAATGCTGACTGTTTTAAGTCTTGCTTTAGCAGCTATTCCGAATATCAAAGAACTGCAGGATAATTGTTTGACAATATGTGATCTGAGTCTGACCTATTCATCTTGGCTTACTTTGCTCATTTCTCTTCTGACAATTTGTTTCCTTCTTTCGACAATTTGTTTCTTCTATTTCAAAAAGCGAAAATAAATGTATATTATCTTGACATACGATGTGCATCGCAAACGCGTGGCCAAGGTTTTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGTGAAAATGCTGTTGTAATACCTTACCTATTTTTTGATACAATCAATCTAGAAACAGTGAAAATGCTGTT # Right flank : GTCTGTCTTTGTTTATCTCCGAGGGCACCAAAAAAGCGAGCAAATTCTTGTCTGCTGGGAAGTATGAGAATTTGTTCGCCTTTTGTTTTGTAAGAATTATCAAGAAAAATTCTCTTAGTAGGAGAGTTTTTCTGTGTTTCAACTACGATAGTATAGAGTTTAAGTTAGATGGCTGATCAGTTTTTTGTTATTTCATGATAGTGTTACGAATATTTATTGGTCTATTGAGTTAAATTAAAAACATTATTTTCTATTTCATTTATCGAAAAGACCTACTATCCAGTAGCCCCCCTACTGTACTAGTCCTTTTTCAGTTTATCTATGGTATAATAGAGGATAGATTTATCAATTGGAGTATGAAGGATTTTATGATTAAACTTGTAGCAACCGATATGGATGGCACATTTCTAGATGGAGAGGGTCGGTTTGATATGGAACGCCTTAAAAACTTACTTGTTTCCTACAAGGAAAAGGGGATTTATTTTGCAGTGGCTTCAGGT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //