Array 1 19593-16756 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAOS010000010.1 Arcanobacterium phocae strain IN-4A NODE_10_length_54230_cov_43.628146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19592 29 100.0 33 ............................. ATGATTTTAATATCGATATACCAATTCGTACTT 19530 29 100.0 32 ............................. TTCCGCAACGCCGTTGAGGAAGCACACATCAC 19469 29 100.0 32 ............................. CAGATACCTACACCGCACGTCGAGCGGATAGA 19408 29 100.0 32 ............................. CTGAATACGAAAATAGCCGGCGTGTTAAACCG 19347 29 100.0 32 ............................. GGCGTAATCAATTTCTTTGTAAATTCCTCAGC 19286 29 100.0 32 ............................. AAATCTTCTTCACAGGGGGACTTCCCTGCTGG 19225 29 100.0 32 ............................. GCCATGCGTGCGTTGCGAGCGTTCCTATTAGC 19164 29 100.0 32 ............................. ATTGATTGTTAATGCGTCATTGAAGCGTGCAT 19103 29 100.0 32 ............................. AAGCTATTGCATTATTTACGAAGTTTGCCATT 19042 29 100.0 32 ............................. TGAATACTGAATCAACCCGGCGTTCAACGCTC 18981 29 100.0 32 ............................. TGATCGAAGATTTCTATGAGGTTCAAGCGAAT 18920 29 100.0 32 ............................. ACTGAGAAACAACCCCAGCCCCAGGAACCGTT 18859 29 100.0 33 ............................. AGTGGCTCCGTTGAGGAGTAGTACGAAATGATT 18797 29 100.0 32 ............................. CGTCTAAGTTGCCCCTTAGGCGGTCATCTATA 18736 29 93.1 32 ..........................G.G GTGATGGGTTCGCCACTGGCCTTCTACCAGTA 18675 29 100.0 32 ............................. ATTTTCGGACATAACTTCTTCTCACCTACCGC 18614 29 100.0 32 ............................. GATTTGTGCCCAGTCGTCGAGGTTCTCCCCGA 18553 29 100.0 32 ............................. GACATCGGAAAGGGTTGGATCCCATGAGCGCT 18492 29 100.0 32 ............................. GTTTTGACGTTCCATGGAATCCCGCCATTTGC 18431 29 100.0 32 ............................. AATTTCGAGCTATGCGATCGGCAGGAACGCTG 18370 29 100.0 32 ............................. AGGCTCTACGAGATAGCGGAAGGAGTTGGGAA 18309 29 100.0 32 ............................. GGTTCGTCCTCTATCCTGCCTGCACTACTTTT 18248 29 100.0 32 ............................. GAAAAGATCATTGAAAACCGTCCACGGCTACA 18187 29 100.0 32 ............................. TGTTCCAGTAATAAAGCTAGCTATTTCTTTGA 18126 29 96.6 33 ............................A CCAAAAGCTACTCGGAAGGCGCGTTCTTCGGGG 18064 29 100.0 32 ............................. CTCGGCCTGGGCTGGTGTTATAGTTTTTTCAT 18003 29 96.6 32 ............................T TAGTGCAGTACCGGAGTTGGCGTACACGGATG 17942 29 100.0 32 ............................. GAGATACCGTTCACGAAACCACGGATAACGTT 17881 29 100.0 32 ............................. CGTTATCAACATCGAAAATCTGGCTAGACTCC 17820 29 100.0 32 ............................. TTTTGGGTATAAAAATATCCCCTGCGCTTTTC 17759 29 100.0 32 ............................. ATACTGTAAATTCCTCCTGTCCACTCTCCCGG 17698 29 100.0 32 ............................. TGGTGTGCCTGTCGAGTTACTTGCTGGACCTC 17637 29 100.0 32 ............................. ATCAGCGAATATTCCCGCCCGTCCAGTGACGG 17576 29 100.0 32 ............................. TTGCGAGTCTTGATTGTAGCGCCGATAATCGT 17515 29 100.0 32 ............................. TATATCCGAAGGGCTGGATTGTCAAGAACGCT 17454 29 100.0 32 ............................. GAGCCACCCCAAGACAACCGTTAAAGAATCCA 17393 29 100.0 32 ............................. TGCTTTGGTGCGCGCTGCTGAGCTGATGGCGC 17332 29 100.0 32 ............................. ACAGCTTCGAGAATGGCAAGAAGCTGGTCGCC 17271 29 100.0 31 ............................. TACACGGGGGAGCTTTTTGAAGCTACTCCAG 17211 29 100.0 32 ............................. AAGGTCTAATCCTTCCGCCTGGTCAAGAGGGT 17150 29 89.7 32 ..........................CTT TCTCGCATTGCTGCAAGATTTGCTGTACTTGT 17089 29 100.0 32 ............................. AGGAGGTGCGCTAAAAATCGAGCTAGTAGATG 17028 29 100.0 32 ............................. ACATCATGGTATGCCCTCCAAACCGTTGAAGA 16967 29 100.0 32 ............................. TTGCTGTGTAGGACGAAATCGTTGAAATGGTT 16906 29 100.0 32 ............................. GGTGGAATTAGCTGTGCGTCTTGCACTTTCGC 16845 29 96.6 32 ............................G TGCTCGCGGACATGACGTGACGCGCACCGTCG 16784 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.3 32 CTCTTCCCCGCACACGCGGGGGTATTTCC # Left flank : TAGACGCGATTTACGGAGGCAAATTCATAGCAAGCATATATTGGAAGACATGCTTGGCACGCTCATGGAGATCTTAGAACCACACCTGCCGAATCGTGATGATGATCGATTGATCAATGATAATGGTGAAGTTTCTGGGCACGTACAATACGGAAAAGATGATGAGTGATGTTTGCAGTCTTAACAATATCTGCAGTTCCCGAGCATCTTCATGGCTATGTAACCCGATTTCTCACTGAGGTTGAAAGTGGGGTTTACGTCGGAAATATTTCTCGGAACGTGCGTGAACGCCTATGGGAACGTGTGAGTAGTACGCTTGACGAAGGAACTTCTACTATGATTTATAGCGACCCGCGACAAGAACAAGGATTCTCGATGCTCACTGCAGGAAAAAATTCACGAAAAGTATTGGACTTAGACGGTCTAACCGTTGTGTCCATGCGTCCTGGACGTGGAGAATCCAAAATTCGAGATCGTTGAAAATAAAGGCTTTCGTTAGT # Right flank : AAAATTTGAAGGCGATTCAAAGATGGGCGCTCAAGTGATCGGAACGATCATGATCAAGGTAGCGCTTCTTATTGTCGCTATTCAAAATGTAGATCTAATTCTTAAAGCTATTAACGAAGCTGGCGAAACACTTATTAACGGGCTGAAAAAGTATGCAACAGTCATACAGGCTAACCCTGTCAATATCGGTGATCTTGATATGGATACTCTAGATATGATCGGCGCAATGATCATTCTATTCTTGCCCTGGCTGATTTCAATGCTTGGCGGCATCGTCGTAAAAATCGTTGTACTCTTGCGATTTGCTGAGATATACATACTTTCTGCTGGGGCAACTCTACCGTTAGCATTCTTGGGTCATACCGACACAAAATAAATTTCGATCGGATACCTCAAGAAGTATGCAACGGCCATGCTTCACGGTTTCACGATCATCCTTGTCCTGATCATCTTTGCCAAATTCCAAGGAGCCGGTACAGACCTAGGAGAAAACCCAACAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCACACGCGGGGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //