Array 1 54102-53417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVZD010000018.1 Clostridioides sp. ES-S-0056-01 CD-ESS005601gDNAQiagen-xx-EN-USA-2019-092-PK_430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 54101 29 100.0 36 ............................. TTTCTTTAGACCACATTTTTTCATTATAGTAGTATT 54036 29 100.0 37 ............................. CTGTACAAGCTTTCAAAACTGTTTAAATTTATAACTC 53970 29 100.0 37 ............................. CGTGCTGAACTTAAAATAATGATGCTATTTTGGGACA 53904 29 100.0 36 ............................. CCTTTAAAAAATTTTTCGTCTGCATGTAAAAATAGC 53839 29 100.0 37 ............................. ACTATCTAGCTATAGTAAGTAACAGTAATCTTTTACT 53773 29 100.0 38 ............................. TAGTAAAAGTATTTCTATCAACATTATTTCCAAACCCT 53706 29 100.0 36 ............................. GAAGATGTTAAATATGATGACTATATTCTTCAAAGA 53641 29 100.0 37 ............................. TCTAGTATGTCTTGTACTGATGCCAAGTCATCATTAG 53575 29 100.0 36 ............................. AATGACCAGTACAAATGCGAGGTTGGCGATGATAAA 53510 29 100.0 36 ............................. CTTACTGCATCAAAACTATCATTCTCAGTTATGTTA 53445 29 72.4 0 .............CGTA.CA...C....T | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 97.5 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAAAGTATGTTTGTTATTGTTACTTATGATGTTGTTGAAGCAAGGTCATTAAACAAGGTTAGAAAAATACTTAGAAAATATTTGACTTGGACTCAGAATTCTGTTTTTGAAGGAGATATTACTGATGGGAAGTTACATAAATGTATTTCTGAAATAGAAAAGATTATTGATAATAGTGAAGATTCGATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGCATATGATAACTGTTATCAATTGCACTACTACTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGAATGCAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAATATGACAAAAATCAATACAAAAATGGGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGAAAGAAAGCACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGGAAAATAGCTATAATGCCGTTAAAAATGAATATATACCTATATCAGATACATTTGTGTATAATGATGGAGAGGAAATAAAAGGATTTATAAGCATAATAGATAAAAACTTTATAGGAGCTTTATTTATAAACCCAAACTACCAAAACTTAGGTATAGGAGGTAAATTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTATTCTACAATAAAAAAGGTTTTAATATATTAAAAGAGCAAATAAATGAGGACTCAGGATTTAAAGAATATATAATGGAATATAGTAAATAATATGAGCTAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 32636-32409 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVZD010000020.1 Clostridioides sp. ES-S-0056-01 CD-ESS005601gDNAQiagen-xx-EN-USA-2019-092-PK_432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 32635 29 100.0 37 ............................. ACAAATGAATCTGCAAATATAGTTGTACTACTTAATG 32569 29 100.0 38 ............................. AGATATTTCAAGCTCTTTTGCACTTTGAGATAAGTTAC 32502 29 100.0 36 ............................. ACTTTTCTAATTTTTTTATATTTCTTTCTAGAGTAG 32437 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GACAAAACCATTTTTTAGGTTTAATTGACAGTCAGTTTTTTTATGTAAATAATATTTTGCTTAAATTGTCAGAAGTCTTTTTATCCGTTTCTTCTAAATGAGAATACCTATACATAGTTATTTTTATTTAAGATAACTTTTTGTTGTGCGTATATGTTTTACAGAAAAGAAGATAATTATAATTATATTAAATATTTTAGAAACCTAAAAAGAAAAAGGTATTATTGGAATAGAGAGTATAGTTAAGCATTTACAAACATATAGATGCTCTTACTTTGCTAAATTATCCCATTTTTATTTTATAATGTGAGTTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGAGCGATTTTTGAGATAAAGTAGGGCATAACAGTTGAAATATAAAGCTTTGAGAGCATATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAATTTAAGAGGATGGTATATGTATAAGCGTTGGAAATACTCAATTTATTTTGGG # Right flank : GTTTTACTGCTGGATAATAGAAGTTTCTTCTCATTGAATAAAGATTTAATCACTTTATATTTATCTTAATTCTGGGATAGTTTAATTATTATTCTCTAGTTGTAATTTGTGTTTCATGATTTTAAAATTTTCAATTCCAATTTTATCTCGTCTAATTGAGTTAACTTACCTTTTTGATTTTCTAATCAATCCATTTTTCTTTATATTTAAGAATCCATATTCTAATTTTATTGTATAGAACAAAATGTTTTTCTGCTATTAAATTAAACTCTTTAGAAAAATGTAATTCAACTGTTTTGATTTTTTATTCTAATGATACCTTAATTTTGGACATAATAAAACTCTACTAGAGTTAGATAGTTTTACATATTTTAACTGTATCTTAAAGGGATATAATTCAATAAAAGGAGTGCTTTTGAACAAACTTTTTTTATCTTTTTTATCTTCTACAGATTTAAGTATATCACCTGTCTGGCACTATAGAGCTTTGCAAATTTCGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 37003-37425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVZD010000003.1 Clostridioides sp. ES-S-0056-01 CD-ESS005601gDNAQiagen-xx-EN-USA-2019-092-PK_415, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 37003 29 100.0 37 ............................. GTGTTAATATAACTTTTCCCATCTTTCTCACCAAACT 37069 29 100.0 37 ............................. TGTATAGCTTCATATGTATTTATACACTCAACATTAA 37135 29 100.0 37 ............................. TTTGACAAAACGTATGGTTTAAATAAATCAGCTTAAG 37201 29 100.0 37 ............................. ATAACAACACATATTAAAATACATACTCCCCAAAAAA 37267 29 100.0 36 ............................. AATACAATGCCACTTCTCCCCTTGTCATTTATAATA 37332 29 93.1 37 ...............A.......A..... AAAGTTTATAGGAGTGTCAACACCAGTAGTATCTAAA 37398 28 82.8 0 ......C...........-.A..T....A | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 96.6 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : ATTCATTTAATCTAAAATGTGAGAATATCTATTTATATCTATTTTTAATAACTGTATGTCCTAATCTTTCAGAAATTATTTTTATGTTGGTTACAGTTAGAAGAAGTAAGCTTGCATTTGCATGTCTTAATTCATGTATCTTTATACATAGAAGGTTATTAGTTTCTAATAGTTTTTTAAAGAATATATTTATTTTATTAAATTTGCTTGTTTAAGTTAACTCATTTTAATATAAATAATTATTTTTTTGTAAATTAAAGTGTATTTATTTTTATTAAATTATAAATTTACATAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAGAAACTTTGCAGTGTTCGTTTTTTTTGGAAAATTGTTTGTAGTTATTGAAATTACTGTTTTATAGAGGTTTTTTATAAAGTATCAAAAAACACTACTGGTCGCTCACTGCAATTTTAAGAGAATTATGTGATTTAAGGTATTGAAAATGCTCAATTTATTTTGGG # Right flank : ATCGAAACCACTAAATAACACTTACTCAAATAGTAGGTGTTTTTTTATACAAAAACTTAAGAAAGGAGAGTAATAATATGGCAATAATACAAACAGCTATTCGAATTTTCGATGGAATTAAATTTTAAATATAAATATACATTAGGAATTGTTAATAGTAGTGAAAATACCTACTAAAGTGAAGATACTTATCTTTATGCTAATACAAAGAAGCTTAAAGCTTTTATCAGAATTAAAGAATCTAAAAGTATTATAAATAGTAAAACTTCTAATTTAGATACGAAGCTAGAGGAATTAAATAATGAACTGTTAAATGCTATATAAAATATCTAAAAGAATTAAAAAAGAGTGCAAAAGCACTCCAATTGTGAGAAATATATACATAAAATCATTATTACAACAATGAAAAATGTACATATTAAGAGACATTTTGTATTTTTTTATGATAACACTTAATTTAAAATAAATGTTTATCATAGCAATAAAAAAGAAAAAGGGAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 14942-14585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVZD010000032.1 Clostridioides sp. ES-S-0056-01 CD-ESS005601gDNAQiagen-xx-EN-USA-2019-092-PK_444, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 14941 29 100.0 37 ............................. TTTAGATAGTATAAATTCTTTTTAATAATTATTTTAA 14875 29 100.0 36 ............................. GTCTAATTCTTCTACTAAATCTATCTATTTGACTAA 14810 29 96.6 37 ....................A........ TGTGTCATAGATATAAGATTATTTAATACTGCTGTAG 14744 29 96.6 36 ....................A........ TCTATTTCATCATAAGCATTTACGTTTTCTAGAACA 14679 29 86.2 37 ......T........AG...........G ATTAATGACTTTAGGAGTAAGCAGAGCTAATGTGACA 14613 29 75.9 0 A.....T.........G...AC.TA.... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 92.6 37 GTTTTAGATTAACTATATGGTATGTAAAT # Left flank : TTATCATGTAGTATACAAGATTGAGTAAATTCTATTGTATTAAATAATTTAGTTTATTTTAGTTTTGAGGGGGATTAATACAATGCGTGATAGTTTACTTAATGAGTACAATTTAAAAACTGATAAGGATATAGAGTATTTTGTGAAATTTGCTAATGCGTTATATGAACTAAAACAAAATAGCGAAGAAAAATTTCAAGAATATGCAGAGATATTAAGAGGTATTCTTAGAGAACAAGAAGAGAGAGAAAATAAGTAAATAGAATAGATAAAGCACTTGGATATTCTATTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATATAAATAAGGGTTTTGCAGTGAGCGATTTTTCTACTCAAGTATGGTTTAACAATTGGAATACAAGGCATTGAGAAGGTTTGATAAGTGCTATCAATTGCACTATTAGCCGCTCACTGCAAATTTGAGAGAGTTTTATGTGTGTAGGTACTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAAAATACTAAAAACACTTACTCAGGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGTAAAAATTTTACGGATATAGTATAATATTGTTAAAGAATATAATTTAGGGGGATATTATATTATGGATTTTTTTAAAAAAATAGCTAAAACTATTTTGTTTCTATTTTTTAATATATGTTTATTTATGTTTACTATAGTTGGAATTTTAGCGATTCAACAAAAAAATATTCCAGCAAGCTTGATTTGTTTTTCAATTGTAGTAATTATACTATTATTATGTTATGGAAAAAAAATAAAACAAATTTCAGTACTAAAGATAAAGGAAAATACTAAGAAAGATGTGAATTTTGACAGTGAGAACTTTCAAAAACAAAATATACTAAATAAAAAAATTAATATTCTAGAACGGAAAGAAGAAAAACAAAAAATGCCTATAGGCTGTATAGTTATCATTTTATTCGCTATTTTACTTATATCTTTAACTCTTTATACTTTT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGTATGTAAAT # Alternate repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5086-4731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVZD010000040.1 Clostridioides sp. ES-S-0056-01 CD-ESS005601gDNAQiagen-xx-EN-USA-2019-092-PK_452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 5085 29 100.0 36 ............................. AATTAATGTTAACGTCGCATAATCATGTTATTATGC 5020 29 100.0 37 ............................. TTGTTTGTGTTCCAAAGATATATTAATCCAGCTGACA 4954 29 100.0 36 ............................. TTTCCTATCTCATTTGCAAAACTATTTATAGATTTG 4889 29 100.0 36 ............................. AACATTGTTGAAGTTTTTGTCATTGCAGTTTCAAAT 4824 29 100.0 36 ............................. TGAGCCATTAAGTTATAACTTTCTTCTGCTGTCATT 4759 29 79.3 0 ......T..C......G....T.TA.... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.5 36 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AGATACAAGGTGAGAAGAAGAATTATCATGTAGTATATAAGATTGAGTAAATTCTATTGTATTAAATAATTTAGTTTAGTTTATTTTTGAGGGGGATTGATACAATGTATGAGAATTTACTTGATATGGATAGGATAGAACTTATTAAAGAACTTGGAAGTATCTTTGAAAAGATGAAAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGGTAGGAAATCAGAAGAAAAAGAGAATAAATAATATAGATAAAGCACTTGGATATTCTGTTGTTTCAAGTGCTTTGTCTGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTGAGCGATTTTTCTACTCAAGTATGGTTTAACAATTGGAATACAAGGCATTGAGAACATATGATAAGTGTTATCAACTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTATATATGTGTAGGTATTGAAAATGCTAAGTCTATTTTGGG # Right flank : TAAAAATACTAAAAACACTTACTTAAATAGTAGGTGTTTTTTTAATGAAAGAATGTGATTATAATGTAAAAAGTAATAAATAGGTAAAATATGTAAGAATTATGTGTTATAATATTTTTAGCAAGAAGATGCAACCTACAATTTATAGAGTGGAGTTCATGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGTGATATATGGATAATTTTTTGTTTAATGTTTTGGCTAGTTTAACAGCTACTATAATAGTTTGCTTAACTAGTAAATTAATTATAGTCAAAAAAACAAAAAGCCACTCTCGCCCAAAGAGTGACTTATTAGTTGAATTTAAATTTCTATTTAAATTCAAAAAATGATTAAGTTCTAATTATGAACTTCACTCTATGCTTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAATAAAAAAAATTTAACATTAATTATTGTAAGTTTTGACATTAATTAATGTTAAAATTTATAAGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 24336-24958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVZD010000010.1 Clostridioides sp. ES-S-0056-01 CD-ESS005601gDNAQiagen-xx-EN-USA-2019-092-PK_422, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 24336 29 100.0 37 ............................. GTTGCTGTTGCTATTGTCTTTGCTAATTCTTGCATCT 24402 29 100.0 37 ............................. CAAACTTCTACATGGGGACTTGAATTTTGGGAAAATA 24468 29 100.0 37 ............................. TCTAATAAAAACCCTATGTTGGTTGTCATTTCTGCTT 24534 29 100.0 36 ............................. CTTGCATATCGAGGTCAAGGAATTTTAGTGATGACC 24599 29 100.0 38 ............................. CTGACTCATTTTTTGATGTTAGTGGTAGCAAAAATTAT 24666 29 100.0 38 ............................. TATGAACTAGAAGATTCAGATATTTTATCTGATAATTC 24733 29 100.0 36 ............................. ATTTCTGACAATGAAATAGATAGGTGTATAGAAGAA 24798 29 100.0 37 ............................. TTTTCATTTTGCAATGATACATTAGCGAGCAATGAAA 24864 29 100.0 37 ............................. CAGGAGAAGCAAATGCCGAAATAAATGGATTTGGCGA 24930 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 99.7 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATGAAGTACACATAGCATATGGATTCCACGATTTAAAGGGTGCAGAGCTACAAAATAGTTATGGAGTTATGAGATAAGCTCAATTATTAAAAGTAATGCTTACATCAGAAAAATATGTAAGCATTATATATTATAATCATTTTAGCAAGGAAAATAAAATTGAAAAGCTAAGGGTGATTTTATCATATAAACGCCAAAATAAATAATTTTTAAATTATACTCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATTTCCTTGTTTTTATTATATAATAAATTTGTATAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATTTTTCTAGTAAAGTATGGTTTAACAGTTGAAATATAAGGAATTGAGAGCATATGATAAGTGTTATCAGTTGCACTATTGACCGCTCACTGCAAATTTTAGAGAGTTGTATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTTTATTATTAAAAGTAACATATTTATTATTAGCTTTATCTACTCTTTTAATAATAATTTATTTAAAATAGATTTCATATAAGAGTTATAGAAAAGATACTGTATAAATTCTTACTTTTTAGAGAAATAAATCTAAAAATAACAGAAAGTAAAAAAGAAATATATTTTGATGAGTTTTTTAGCAACAGTTTATTTTAAATTGTAGATAAAACTAAAAAGGGTTCTCTAGAAAACAAAATCTATCTAATTATACTTACTTACCAATACCATCACTTGATGTAAGCAAGATTCTACCACATTTTCTCCGTACTCCAGTATAAAATCATCTAATTGTGTATCTATAAAATCACAATAATCATATGAACTACCGATATAAGCAGTCAACATATGTGTACATCTATCCATTTTATCTCTAAACATATATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAATACATCTTTTTGGCAACTGGCTGACATAACTCATAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //