Array 1 19906-17058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNTZ010000010.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 1372 CIRM_BIA1372-i1-1_scf10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 19905 33 100.0 35 ................................. ATTAAGATGCGCAAGATGATGAAGAAGCCAATGAC 19837 33 100.0 35 ................................. AATGCTGATTGACAGAGCAAATAAAGACTTAGAAA 19769 33 100.0 32 ................................. ATTTTAAATGCGCAAGATCAGGTCAAGTCAAC 19704 33 100.0 34 ................................. ATCGGGTCGTTAGCGCCATAGAAGTAGAAGGCTG 19637 33 100.0 35 ................................. GCAAATTGTCGATCCGAGTAGCCGATTTTTTGAGC 19569 33 100.0 34 ................................. GGGTTGCGCATGAGGTAGTAGCTGGGAAAAGTCT 19502 33 100.0 34 ................................. ACCACGTGGATCCAGAACCTCAAACTCGCTGGCC 19435 33 100.0 33 ................................. TTGATGTTTAGTTTGGAAGTCGTCGACGGAGAC 19369 33 100.0 33 ................................. ATTTTCCCGGCATTAATGTAATCAGCGCTCAAT 19303 33 100.0 33 ................................. AAGTTCTGCCCGGAAATACTGCCAGAGCTGATC 19237 33 100.0 35 ................................. CCGCATCCACGCGAACAACCGGTTGGCTCCGATGT 19169 33 100.0 34 ................................. TTGCTCTCTGCATCGTCATTGCCCACCAGGTAGT 19102 33 100.0 33 ................................. ATCCGGGACATGTCTTCAAAAGAAGACCTGAAA 19036 33 100.0 33 ................................. CCTTGGCGACCTCCATTTCGCTAGCCCATTGCA 18970 33 100.0 34 ................................. AAGCCTTAGGCACGAAAACCAACGAGGACTTGAC 18903 33 100.0 37 ................................. AAGTTATGCTACCAAGTACGCCTTGAACAAATTGTTT 18833 33 100.0 33 ................................. ACTAAAAAGAGTCGTTGGACTTTACGTCGCTAC 18767 33 100.0 33 ................................. TTCTTGAGCATCAGCTACCTTGTCGCCGGCAGC 18701 33 100.0 35 ................................. CCAAGTACTGCCAATATTGACCGATGAGCAGAAAA 18633 33 100.0 33 ................................. ATAACATTACTCTCCTTGAAGATAGTAAACTAA 18567 33 100.0 34 ................................. TTGACATAGCCAAACAGCTTGGTCGACTGGTCAT 18500 33 100.0 33 ................................. AACTATGTCGTATTTTAAAGGAATAGATTGCGA 18434 33 100.0 34 ................................. GTTAACCACGCTCATTGTAGGAGCAATTGGCATC 18367 33 100.0 36 ................................. GTTAACCACGCTCATTGTAGGAGCAATTGGCATCGC 18298 33 100.0 36 ................................. CTTACGGATCAAGCTAATCTTGATTACTGAATCACG 18229 33 100.0 34 ................................. TTGGTAGTCCCGCTTTTTGACTAGCGGTGAGTAG 18162 33 100.0 33 ................................. TTTTATGTAAAAGACAAGGTGCAAGATTTTCTT 18096 33 100.0 34 ................................. TGGGAAGTAGCGGGTTGAAGTGTAACCGCCCTTG 18029 33 100.0 33 ................................. ATCGACCAGGTGACAGAGAAGTATGACAAGTAC 17963 33 100.0 32 ................................. TTTACTTGAAAGAGCTACCGGAGCCAATCAAC 17898 33 100.0 36 ................................. AATGATGAATAGGTGTTATAACCCTAAGAAGAAATC 17829 33 100.0 35 ................................. TTGATTGATTGAGCTGTTTGCTCTTGCATCATCTC 17761 33 100.0 35 ................................. CGGTTTAAAGCCATTTTGGTCGCACCATTGGCAAA 17693 33 100.0 34 ................................. TTGCGGGCGTTATCATGTAACAAGTCATACTAAA 17626 33 100.0 36 ................................. AACCACCGAAGGTACTGCTGCTGAATTGTGGCTGAC 17557 33 100.0 34 ................................. TGGGCAACACCACGATGAGCGAAGCAGTTGCTGC 17490 33 100.0 33 ................................. GTCTGGTGCTGCTGACAGACTGCCATAGTCAGC 17424 33 100.0 34 ................................. TTCGCTGGCGTAAGCATCAGCTGGCTTAGACCAG 17357 33 100.0 34 ................................. ACTGCCGACCGCTGCCACGTAAACTGCGTCTTGA 17290 33 100.0 34 ................................. CTCACCGGCTCGGTCGACGGCCTGGAGCGTGAAA 17223 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 17157 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 17090 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 43 33 99.5 34 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTAACTAAATGTTGCG # Right flank : ATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCATTCCCTCGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCGCGGTGCGTTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTACCGGCTTAGGCCAAAACATGGCCCGGCAAATCGCCTTAAACGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGTTCCAGCCTCAAGGCGGCCCGCCTGGCTGAAGCTCAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //