Array 1 914687-911468 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHYS01000003.1 Streptococcus intermedius strain 14-03-17 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 914686 32 100.0 34 ................................ TTATCTCGTAACGAGTTCTTAGGCTGACTTGGTT 914620 32 100.0 34 ................................ TAGAATATGGTCGGTTGATTGCACATGGGACTCC 914554 32 100.0 34 ................................ TGACGTCGATTTTAAAGCGTTCGTAGAGAAATTC 914488 32 100.0 36 ................................ CAGACAACCCGCCAAGTAACAGTCCGGCCGGGCCAG 914420 32 100.0 35 ................................ AATTTTATATTATGGATTAAAAAGACGAGCAACCA 914353 32 100.0 35 ................................ TGGTAGATACGCCATAATATTTTCTCCTCTTCACC 914286 32 100.0 34 ................................ AAGTAGGTTCTAATGGTAGCGGGAGGGCTTGCGC 914220 32 100.0 34 ................................ AATTTCTTCCGTTTTTTTCTGCAGCTCTGTCTTT 914154 32 100.0 34 ................................ CACAATGGATGCTTGTCGACCATCGACTATCAAG 914088 32 100.0 33 ................................ TTGCCAATCAAATCACCAATATCGACCAATGTG 914023 32 100.0 36 ................................ TCTCACTCCTCTGCAAATGCAGGAGCAGGTCAACGC 913955 32 100.0 34 ................................ TGTTTTTTGATTTTCGAAAGGCAATTCGAACCAG 913889 32 100.0 34 ................................ GACACACGCACGCTAGCTTATGTTTTGAAGCAAA 913823 32 100.0 35 ................................ TTTTGGGAGTAAAGCAGATTTTGAGTATGGATTAG 913756 32 100.0 34 ................................ CTCCAGCGCCCCACAAAGCAGCATATCCGTTAGC 913690 32 100.0 35 ................................ TACTGTTGTGCCGTATTTAGAAGCCATTCCAGAAA 913623 32 100.0 34 ................................ ATAGTAACCAATGGCTGATAGGCCTGCAATTAGT 913557 32 100.0 35 ................................ TTTTGCGCCACGTTTTACTTTTTGAATATTCACCC 913490 32 100.0 34 ................................ TTGTATTCTCCCTTATTACCAAGGGCGATAACAT 913424 32 100.0 35 ................................ TGTGCTAAAAATCTGTTGAGTAGGCGGACTTTCCG 913357 32 100.0 34 ................................ ATCTCAATAGTGATTATAATTATACAGACACGGA 913291 32 100.0 35 ................................ CAGTTAATTTTTTTCATTATTTGTCTCCTTTTTCC 913224 32 100.0 33 ................................ TCCTTATATTTTAAACTAATAATTAACATTTCC 913159 32 100.0 35 ................................ ACAAGTTGGATAGGCTAAGCAGGTCTCAAAAAGAC 913092 32 100.0 35 ................................ ATCAGCTTGTCTACCAATGCTTGAGAGAGGAAATA 913025 32 100.0 35 ................................ ATAGCTTCTCTAAACATAGTGCCCAAGTTGTAAGT 912958 32 100.0 33 ................................ AGATGAAGCTTATTTCTATACTTTAGTCAATTA 912893 32 100.0 34 ................................ AAAAAGATGAAACGCGGCTGATTTTTGAAGCAAA 912827 32 100.0 34 ................................ AAAAACAGATATGATTCATGCTACTGGAGTCGTT 912761 32 100.0 34 ................................ CAAAGTGATTACATGTTAAGTCAACTGGAAGTGT 912695 32 100.0 34 ................................ AGAGCATTGTGATTTATTTAACTCCATAGGATAG 912629 32 100.0 34 ................................ TGCTGCCTTGACTTCCATATCTTCCAGGTCCAAC 912563 32 100.0 35 ................................ TGTATTGGCGATCAAGTGATTAACTAGGAGGGACT 912496 32 100.0 34 ................................ TGCTTCTCTAAGTAACTTGTTCCAACACGATCAT 912430 32 100.0 34 ................................ ATGGCAGATATTGTTTTTGTTGGCGGTTCAGCGG 912364 32 100.0 34 ................................ CCTACAATCCCCGCATCATAGCTGGAAAACCAAG 912298 32 100.0 35 ................................ ATATTCAGGATAATCATAAGCTTATCTCCTTACTT 912231 32 100.0 35 ................................ ATCATAAGACAGGGAGCCTAGGTCTTTGCCTGGGA 912164 32 100.0 35 ................................ CTGTTGATAAGGTCTTAATTGCATCCCTTACCTCC 912097 32 100.0 35 ................................ CTGTTGATAAGGTCTTAATTGCATCCCTTACCTCC 912030 32 100.0 36 ................................ TACTTTCTGTCTGTCGTGAAAAAATTGCGAAAGGAC 911962 32 100.0 35 ................................ AAGGTATTTGATGATTTCTTGCACCGGATTCCAAA 911895 32 100.0 34 ................................ TAGTCGAAATATCCAACTTATCTTAGCTCAAAAT 911829 32 100.0 33 ................................ TCCTTATATTTTAAACTAATAATTAACATTTCC 911764 32 100.0 35 ................................ ACAAGTTGGATAGGCTAAGCAGGTCTCAAAAAGAC 911697 32 100.0 34 ................................ TTTACGATAATCATCATATCCATCTCCAACTAAA 911631 32 100.0 34 ................................ ATAGCTGAAAACTTTACCATTAAGATAATTGGGT 911565 32 100.0 34 ................................ CTGAAGAGTATCGAAGTAGAATCAAACATCCACC 911499 32 90.6 0 A...............A.A............. | ========== ====== ====== ====== ================================ ==================================== ================== 49 32 99.8 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCCATTCGTGGTGAACTGGAATCCTATCCGCCGTTTTTAATCTAGGAGTAAATTTATGATGGTTTTAATAACTTATGATGTTAATACGGAGACTGCTGCAGGTAGGAAACGTCTTCGATATGTTGCAAAACTCTGTGTTGATTACGGTCAGCGCGTACAAAATTCAGTTTTTGAATGTTCGGTAACTCCAGCGGAGTTTGTAGAAATAAAAAATAAATTGTTGACAATCATTGACCAAGAATCTGATAGCGTCCGATTTTACTTACTTGGCAAAAATTGGCAAAATCGCGTGGAAACCCTTGGTCAAGATGATAGTTATGACCCTGATGTGGGGGTATTACTTTTATAAAAACTTGTGTGCGAATCTAGGTTGCACATCAAAACCTAGAGCATTCGCGTTTTAAAACAGAAGATAATGACAAAAATCTAGTTTTTATTAAATGAAATAGCTCAATAAATTCTTATATTTAGTCACAAACGGTGCAACCATGCGCT # Right flank : TTTGATGAGTTTGTCTTTAAAAGTTTGAACGAGAAACTGTACCAAAAGTTAGGTTTGGATAAATAGCGAAGCAAACTAACATCTGAGGTCAGAGAGGTTCTAAACATACATATCTTAGGTAGAGTACTTGAAGTAATAAAATTCCCGATATTTCCAACAAAAAAACAGCTCAATAATAGAGTTGTTTTTTTTAAATTGTTAGCAAATCTAAATTTGGGGTTTGTGTTGTGTATATATCTCGATTTTTAAACTTCAAAATTATAGAGAGTGGTTGATAAGTAGCGCTCACCATTATCTGGGGCAAGAGCTAGAATTTTTTTACCTGTTCCTAATTTTTGGGCCACTTCAAGTGCAGCATAAATAGCTGCAGCAGAAGAAATACCTACCAGAAAACCTTCTTGTCCACCGATACGACGCCCAAGTTCAAGTGCTTGATCAGAAGTAACGCGGACAATGCCATCGTAAGCTTGAGTGTCTAGTGTTTCTGGGATAAAACCAGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //