Array 1 8656-8139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHL01000061.1 Streptomyces sp. NRRL F-5527 contig61.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8655 29 100.0 32 ............................. CCGCGCACGTCGATGAGCGGTCCGAGGTGGGG 8594 29 100.0 32 ............................. CACCGGGATACCGCTCGCGAGCGCCTCCACGC 8533 29 100.0 32 ............................. CAGGGAGGGGGCGTTCGTCGTGTCCGGGGGCT 8472 29 100.0 32 ............................. CGCAAGGCACTCGCCGCCCGCCGCGAGGTCTT 8411 29 96.6 32 ........T.................... CGGGCCTACCTCGGCGAGCGCATCCACCACGG 8350 29 100.0 32 ............................. TCCAGGTTCCGGTCGTGCAGGCGCCGGTTCGC 8289 29 100.0 32 ............................. CGGCTCACGGTCTTGTCCCGCGGCTTCATGAC 8228 29 93.1 32 .................A.....A..... GGCTGGACCATCGGACACCGTCCGGCCCACCT 8167 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CCGCTCAGAAAGCAGAAGCAGGACAGTAAGGCAGTTCACCGGGCAAGGGCGGTCTCGTGACCGGTGCCGGCAGCGGCATGGGCGCGGCGACGGCACGGCTGCTCACCGTCCGCAGCGCCGCCGTCACCGTGGTCGGCCGTCGCGCCGACAAGCTCCACGCGGTCGTCGCGCAGATCCCTGCTCGTCGACCGAGCGGGCCCACGCTCCCGCACGGCACACGGTCTGCGGAACGTGCCACCGGTACGCCGTCCCCGGTTCGACGGGGATGTGGACGAGGGAGTGCTTGATACAGCAGAGAACCGGTCCAGCAGGAAGCCCTCGCTCGCGCTCCATGCGAAGTTGCCTGAGTTCGTCCTGCTCGGCGGAGGTCAGCCGGCCGCCGCGTTCGCCCCGGTCGGCCTCGGACTGGCGGACCCATCCCCGCGGGTGCGGGGAGCAGAGTCGGACCCAGCCGGGGCCGGTGGGGTCCTCGGGACCATAGGTCCCTTGTCGGTGCGAGA # Right flank : GCCGTCTCCCGCCCTCCCAGTGAGCAACAGTGAGCTTTCGCCAACTTGAAGCCGCAGCTCCCAGGGCTGATGTGGCGGTGTTCGGTGTGCTCATGCTGGTCGAGGGCGGCAGTCTGCGGAGCAGGTCATCGGGCGGAGCGGTGGGCCCGCCGGTTCCTGCCTGTTGTAACCGGGTGGGTCTTCTACGGTCCGGTCTGCTCGGGGTCAGTCGGCATGGGGGTGGCCCGGAGCCGCTTCAGCTGCCTTCGCCGTCTTGGTTTCACCCGACGTCGAAAGTCCCTGGTTCTCGTGGAGGCCAGGGGACACCTACAAGGGCGACGGGACAGGGCGAGTGGTGTAGTACGGCGTGGTGGGTGGGTCTGAGTTCGCGGCGCACCATGCCGTGCCGGTGGTGGACTCCGAGAACGAGGAGGTCGGCCTGGTGCGCGGCTTGGGTCAGGACGTGGTGCGCGGGGCCGTCTAGGACTTGTCTGTGCACGGTGACGCCGTTTTCGAGGGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22256-20459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHL01000066.1 Streptomyces sp. NRRL F-5527 contig66.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22255 28 100.0 33 ............................ CGGCGACGCCGACCCGGGCGAGGACCTGGAGCC 22194 28 100.0 33 ............................ CTGATATCAGTACGCCCTCCCTCCCCCCGGTTC 22133 28 100.0 33 ............................ TTGCTCGGAACGGCTCGTAACCGCACGCCATTC 22072 28 100.0 33 ............................ CAAGGGTCTGATCCGGCAGATCCTGGAGATGGG 22011 28 100.0 33 ............................ CTGTTCGGTGGGGATGACGGTGGTGGCGGGACG 21950 28 100.0 33 ............................ TTCACTCCGCAACGGGTACGCCGCGATCTCACA 21889 28 100.0 33 ............................ CCCTGAGGCGGCCCGTGCGGACGCTGTGGCGGC 21828 28 100.0 33 ............................ CCCGCAGCACCGGCCAGGTGGGGGCGGTGCCGT 21767 28 100.0 33 ............................ CTCTCCGACGTGGTGAACCTTGCCCTGCTTGTA 21706 28 100.0 33 ............................ GGTCACCCGGTGGGCGGCGCGCGGCGAGGTGCC 21645 28 100.0 33 ............................ GCTGAAGGACGGCCAGAACCGTCCGCTGTGGGA 21584 28 100.0 33 ............................ GCCGTACAGCCTGCTGTTCATGCACGACCCGAC 21523 28 100.0 33 ............................ CTGGCCGTGGATCCTCGGCGCCTTGACCGGACC 21462 28 100.0 33 ............................ CGAGCCGAACCGCCCCACCGAGGACGGCCCCCT 21401 28 100.0 33 ............................ GAGACCGTCTTCGTGACCGGCGACCGCGACCTC 21340 28 100.0 33 ............................ CGTGCTGGCGCAGTCGGGCCGATCGCCCTAAGG 21279 28 100.0 33 ............................ CTCGCGGTGGATGGAGCGGGAGGCGGAGCTGTT 21218 28 100.0 33 ............................ CGGGTCAACGCCCTGCGCGCCAACCTGCGCGAC 21157 28 100.0 33 ............................ CGGGTCAACGCCCTGCGCGCCAACCTGCGCGAC 21096 28 100.0 33 ............................ GACCGCTGGCGGAGTTGGAGACGGAGTAGCCGA 21035 28 100.0 33 ............................ CTCCTCGTACGCCTGGAGCCGCTCTGCGGCCTC 20974 28 100.0 33 ............................ GCCGTCCGCGTTCAAGGCCAAGCACGAGGAGAT 20913 28 100.0 33 ............................ CGTGATGGTGCGCTCCGAGGCCCCGGTGTTGGT 20852 28 100.0 33 ............................ CGGTGCGGTGTCAGCCACGGGGCACCGCCGTGG 20791 28 100.0 33 ............................ GCCGGCCTGCCCCTGTCCGGCTCGATCCCGGTC 20730 28 100.0 33 ............................ GCCGGCCTGCCCCTGTCCGGCTCGATCCCGGTC 20669 28 100.0 33 ............................ AGAGGCGTAGGCGTTCATCGCCATCGTCCCGGC 20608 28 96.4 33 ..............T............. GACCCACCTGGCGTTGCAGCTCCTAGCGCGGTC 20547 28 100.0 33 ............................ GTCCCGGCCGTCGTGCAGCCCCATCGTGGCCGG 20486 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 33 GTCGTCCCCGCACCCGCGGGGGTAGCTC # Left flank : CTGCCAGATGAGGACCTTGGCGCCCTCTGGGATGACGGCGACACCGTCGTCAGCAGCGGCCGCAACTGGAGCGCCACCCACCACCTCGATGTCATCCCGGAACCCACCGACCCTACCCCCGCCGGGACGGCTCCGTGAGCGCCGGAACGACTGTGGTCGTGCTCATCGCGGCCCCACCCGGCCTCCGGGGACACCTCACCCGCTGGTTCGTCGAAGTGGCTGCTGGCATCTATGTCGGCAACCCCAATCCTCGGATCCGGGACCGCCTTTGGAGCGTCCTTGTCGAGCGCATCCATGACGGCCAAGCCGTCATGATCGAACCGGCGGCCACGGAACAAGGCTGGTCTACCCGCACCGCTGGCCGCGACCGCTGGACCCCCGTCGACTTCGACGGCTTGACCCTCATGGCCCGTCCGCGCCAGAGCGGACAGCCCTGGCGGCCCACGAACGAGGTAAAGCAAAATGGCATGAGCACCTGACAACACCGCAGGTCACGAAGT # Right flank : CTACCCGGCGCGGGACTGGCGCGGGACTGGCTGGAAGGCCCAAGTCCTACCCGCACCGAGCGGAGATGTGCCGACGTTTAATGATCCCGAGAAGCCCACACCACGTGGAGTCCGGTAGCCGTGAACAACTCGGTGTACGGCACGGCAGCTCCCCAGCACTCCTGCGCCGGCCGGGCTGCTCAGGTGCAAGACAAGGCCAGCTCCCATGCACACTGCGCAGAGATCACTTCTCGCAGACGATCCCTCCGGAGCCGAGCCCCAGTGGGTCACAACGCGTCGCTTGTGAAGAAGGGCTTCGGCGACTTCAGTTACGTCTTTCCGATCGGCATCGACGCGGGCATCTGCGTCCTGCTGGCGCTGGATCTGCTGCTGACGTGGATCCGTATCCCGTTCCCGCTGCTGCGGCAGACGGCGTGGCTGCTGACGGCGGCCACGATCGCCTTCAACGGCGCGGCGGCCTGGCCGGATCCGCTCGGTGTGGGCATGCACGGTGTGATCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32757-38191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHL01000066.1 Streptomyces sp. NRRL F-5527 contig66.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32757 29 100.0 32 ............................. GTTCGAGACTCGAGCTTCTACCCGGCCGCGCC 32818 29 100.0 32 ............................. CCGCGCAGGTCAGAGCACTGCGGCGGCCCTGG 32879 29 100.0 32 ............................. TCCCCGAACAGGGCTCCCTCCCGGGACAGTGG 32940 29 100.0 32 ............................. CTTGACGACTCGTCCGAAGGTACATGTAAGAC 33001 29 96.6 32 ............................G GTGACCAGGTAGGCGATCCCGCCCCGGCGGAT 33062 29 100.0 32 ............................. TCGACGCCACCGCCGACGAGCGAGAGCCCACC 33123 29 96.6 32 ............................T GGTTGACGGTCAGTGAGGTCGCTCGGCACTTC 33184 29 100.0 32 ............................. TTTGAGCGTGCGGTTCGTTCGTGGCGGTCCGC 33245 29 96.6 32 ............................G CGGAGATGTACCGCTTCATCCAAGGAGCCCGC 33306 29 100.0 32 ............................. ACCAAGCCCACCCAGTAGAACGCGCCGGCCGC 33367 29 100.0 32 ............................. CACCGCCACGAGCGGCGCTGCAGGGTGCCGTC 33428 29 100.0 32 ............................. CGGGTCCGGACGAGGACAAGAACCCGTCGGTG 33489 29 100.0 32 ............................. ATGCCGCAGCCGAGGATGGCGATGGGCTTGGG 33550 29 100.0 32 ............................. TCGGCCCGCTCGTCCGCCTGGCCCTCATCGAT 33611 29 96.6 32 ............................T ACCAGGTCGACGGCTACCTCTCCGGTGCCCTG 33672 29 96.6 32 ............................A ATGCGCTGTAGTCCCTGGGGGTCGGCCCCGTA 33733 29 100.0 32 ............................. CTCCACGGGGAGCGGCCGTACTGCCTATCCAC 33794 29 100.0 32 ............................. GAGGGCGGCGACCTCGAGCCGGGACTCCTCCG 33855 29 96.6 32 ............................G ATGACCCCGCAGTGCGAGGTGAGGTACCAGAG 33916 29 100.0 32 ............................. CGTTCAGTCCGACCCTCACGTTGTCGGCGTCG 33977 29 96.6 32 ............................G GGACGGCGCACGTGATGGCCGCGCGCACGCCC 34038 29 100.0 32 ............................. CTGACCACCGCCGAGCTGTTCACCACCTCCCT 34099 29 96.6 33 ............................G ACCCCGGTCAGGAGCGAGGAGCACCCGCAGGAC 34161 29 100.0 32 ............................. AGATCCTCCTCGATCGAGGAGGCGGACAGGCC 34222 29 100.0 32 ............................. TCTGTTGTTTCATTCCCAAGGCGTCCGGTTTT 34283 29 96.6 32 ............................G TCCTGCGCGGTGATCCGCTCGCGGTCTCTCGC 34344 29 100.0 32 ............................. TTGATGCCCTCGTCGACGATCCGACCGGCCAT 34405 29 100.0 32 ............................. TCCCCGGGGTGGCGGAGCTGCTGGCGCAGACC 34466 29 96.6 32 ............................G CCACCTGACCGGCGACCGGCCCCCACGGCCGC 34527 29 96.6 33 ............................G ATGACGGACACGGAGTACTCGAAGGCCCGCCGG 34589 29 100.0 32 ............................. CCGGCGTAGCCGACCGACCGCGGTGAGGGGCC 34650 29 96.6 32 ............................A CGCCGTGAGAGCCCTTGTGGCGTCCTGGGGGC 34711 29 100.0 32 ............................. GTCGGCCGCATCGACCGCATCTGGCGCGAGGA 34772 29 100.0 32 ............................. CGGGCCAAGTGCCCGTCGTGCTCGTCGCGCAG 34833 29 100.0 32 ............................. TCCAACGCGGAAATGGGCCGGGTCGTGGCCGC 34894 29 100.0 32 ............................. CGTCTGCCCCGGCAGTGGTATCAGAAACTGGT 34955 29 96.6 32 ............................G ACATCGCGCCCGGCATCGTCGTCCCCTACGAG 35016 29 100.0 32 ............................. GTTGAGGTCCTCGACCACGTGGACGGGGCGGA 35077 29 96.6 32 ............A................ GTGTTGACGCCGGGGGTCAGGTCGGTCAGCAG 35138 29 96.6 32 ............................G CCCGGCGCGACCGTGGGCCAGCTCGCGCCGGC 35199 29 96.6 32 ............................G GGGCGTCCCACCGTCGGAGTCTGCGGAGCGCG 35260 29 100.0 32 ............................. ACCGCACCGACAAGACGCCCACCCTGTCGGAC 35321 29 96.6 32 ............................G TCGGAGCGCGGCGACGCCGACGAGCCGGGCCC 35382 29 100.0 32 ............................. CCCGTCGTCGACCGGATCTTCAACCGGACCGC 35443 29 100.0 32 ............................. AGGTTCCCGACGAGCAGATCCTCGACCTCGGC 35504 29 100.0 32 ............................. AGGTTCCCGACGAGCAGATCCTCGACCTCGGC 35565 29 96.6 8 ............................G CCGCCGCC Deletion [35602] 35602 29 100.0 32 ............................. GGCGGATGCCGCCCACCCGGTGAGGGTGGACG 35663 29 96.6 32 ............................T CCGTGGCTGACCGAGTTGGGCGAGTCGGTGCA 35724 29 96.6 32 ............................G CCGCAGGCGTGAGCGTCCCCGAGTACGTGCGC 35785 29 100.0 32 ............................. GGGGACGACGTCGTCGCTGTAGCCGGGCCAGT 35846 29 100.0 33 ............................. CCATCACCGAGCCCGGCATCTACGACATGCCGA 35908 29 100.0 32 ............................. TCGTCCACGTACACCGACCTCGCCACGCCCGG 35969 29 100.0 32 ............................. GCCCTGGTCGGGCCGAGCGGAGCCGGGAAGTC 36030 29 100.0 32 ............................. CCGGGGTAGGACAGCAGCGACGTGATGACGAG 36091 29 100.0 32 ............................. CGAGCGCGAGGTACACCAGCTTGCCGAGGTCC 36152 29 96.6 32 ............................G AGTGACGTCCTGGGCGGCCTCACCATCCGCTT 36213 29 96.6 32 ............................T GCGTGAGGACTCGCCGTCCTCCAAGGCGCTGC 36274 29 100.0 32 ............................. CACAGCTTCGGCGGAGCCTGCGCCCTCCGCGG 36335 29 100.0 32 ............................. GCCGAGGACTGCCCACTGTGTACGGACCCGAA 36396 29 93.1 32 .C..........................G CTGAGCACCATCGTGGGCAGCGCGGCCAGGTC 36457 29 96.6 32 ............................G ACCGCCCCGTACGTGATCACCGTGATCGAGGT 36518 29 96.6 32 ............................A CGCGGGTGGGGCTTCTTCGTGTCCAGTTCGTA 36579 29 100.0 32 ............................. CGACGACGGCCCCCGACACCCCGTCACCCATC 36640 29 96.6 32 ............................A CAGACCGTCCCCACCACCTGACCCGGCCCACC 36701 29 96.6 32 ............................G ACCACGACGACGGGCCGCTGCATCATGGGCGT 36762 29 96.6 32 ............................A TCGGGGAACGGCAGAGGCCCGCGGCCGGGTGG 36823 29 100.0 32 ............................. CATGCCGGGCCGACGCTTGCGAGCATGGGCAC 36884 29 100.0 32 ............................. GTCCGGGCGGGGTTGGCGTACAGGTCCTCATC 36945 29 93.1 32 ..T.........................G TGCTTCGGCATGCCGCTGGCCGGGCGTAGCGT 37006 29 96.6 32 ............................G CGGGGCATGCAGCAGAAGCTGGTGAACTTCCT 37067 29 96.6 32 ................T............ CTGTACGCCGACAGCCAGACGGAGCCGATGGC 37128 29 100.0 32 ............................. TCATATCGCTCGGCAAGGCCACCGTCGTGTGG 37189 29 89.7 32 ..............T.........A...G GAGGCGTGGGAGTCCGGTGCGTGGGAGTGGGA 37250 28 96.6 32 .................-........... CCGGCAACCCCCAGTGGCACGCCGCCCGCGCC 37310 29 100.0 32 ............................. TCCTCGTAGCGGTGCACGTGGTCGGTGCCGTT 37371 29 100.0 32 ............................. CGTGACGCCGACCAGGCCGCCGCCATCCTGGC 37432 29 100.0 32 ............................. GCGTCCTCGCCCACCGGCGGACCCGCATGGAC 37493 29 100.0 32 ............................. GAACGCCGGGTCGCGGCCGAGGTGATCGCCGA 37554 29 93.1 32 .................A..........G GTGCTGGGTACTGCGGATCTGGACGGTGGAGC 37615 29 96.6 32 ............................T CCGTCGGCGGCGAGCTGCGGCTCGACGGCCCA 37676 29 96.6 32 ............................G AAGGAGACCCCGGACAGCGGGGTCGTCCAGAA 37737 29 100.0 32 ............................. CCGATCCGCCGCCCCGCCCTCTGTGCCGTCGT 37798 29 100.0 32 ............................. ACTTCCTTCTCCAGCACCGCAAGGCGCGCGTC 37859 29 96.6 31 .....................A....... CCCCTGGGTTGTTCGGGGCGCTGTCCCCCGA 37919 29 96.6 32 ...................A......... TCCCGCTCCCGGACCGCCCGCCGGCCGGACCG 37980 29 96.6 32 ............................G CGGTCCGGATGGAGGTCCCCTACCGCCGGATC 38041 29 100.0 32 ............................. CTGGCACGCACCCTGCGCAGCCTGTCCGGGGA 38102 29 93.1 32 ...............A.....A....... CTCCGCGGCGTGGCATTCACCCGGGCCGCGCC 38163 29 93.1 0 .................A..C........ | ========== ====== ====== ====== ============================= ================================= ================== 90 29 98.2 32 GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Left flank : GTCAGCCGGCAGCCGCCCCCACGTCAGCCCCGCCGCCAACACCGGCGCGGCCTCGGCCTCGTCCATGGCCTGAAACGCCGGGCACGCCTTCCCACAGTCATGGATGCCGCACACCCACATAAACCACAGCTGGCCCCGCCCCCCGCTGATCTCATCCAACCTCTGCCGGAACGCCCGCGACAGATACTGATCCCATATCAGCCCTGCCACCGCTGCCGTGTCCAGCAGATGCCCCAGCAACAGATGCCTCTGGCCGCCGTTCCTCGCCGCCGACTTCCCCCAAAGCCGCGATACCCGTTCTACAGTCTCCGGCGACAGCCCCATCGCCTCCATCAGCTGAACGACGGAACCCCCACGGTCCACCACGGAAACCACCGCCTCACTCAGATGCCCTGGCACACTAGGCCGTGCCACTGACAACGCCTCCGCCAGGGCACAGGAGCGGAATGCAGGCGAAGGAAAACCGACCCCCTTGCTAGCATCACTGCAGGTCACGAAGT # Right flank : CGGCGGAGGCGGCGGGGGTGGGCAGCAGCGAAGAGGTCCTTGGCATTGGGGTACGACATCGGCCCGGCCCACCGGCGGGCGGAACAGATTGACGAAAACCATTTCGCCCTCGGCGGCCGGGCCTGCGGTGTCGCGTTCGTACTGGTAGTCGGTGTAAAGCGCGACCAGCTCGGTGGTAACCGGAACGGTGCGCGAACGCCGGGACTTGGCCAGCGCGCCGTTGGGATTATCCGTGCGGCGCCGGACGTGGAGATGCGGCCCCGCGGTGCCGCAGCCAAGCACCCGGGAGGAGGCCAGCAAATGCAGATCCTCGCGGCGCACAGCCCCAAAGCCTCCCCGATCCGCAGACCCGTACAGGCCAGCAGCGCGATCAGGAACCGGTCCCTCGCCCGCCCCACCAGAGCGATCATCGCGGCGATCTGCCCGGAGCTGAGGTCCTGGCAGCCCGGATCGGTGAACGCGAACCGGAACGCGCCCGCCTCCACGGTAGGCAAATGGCC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 59164-57371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHL01000066.1 Streptomyces sp. NRRL F-5527 contig66.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59163 29 93.1 32 ...C....................T.... ACGAACCGCCCCTGCCGAACGGACTCGGGCAG 59102 29 93.1 32 ...C....................T.... ACCTACGACGAGAGCGATCCGTTCCTCCGTCA 59041 29 93.1 32 ...C....................T.... TAGAGCGCCACCCCGAGCTGCAGGCAGACCTC 58980 29 93.1 32 ...C....................T.... CCGCTCCCCGCGAACCTGTACCCGGGCGACTG 58919 29 93.1 31 ...C....................T.... TCGCAGACCGCCTGGGCCTTGGCCACACCGA 58859 29 93.1 32 ...C....................T.... ACCCAACGAGTTACCTCGGGCGACGCGGGGGA 58798 29 93.1 32 ...C....................T.... TCGCGGAGCACTTCCGGGTCTCCACCCGGACC 58737 29 93.1 32 ...C....................T.... CACGCCGCACGCCTGGCCCGGATCGCTGAAGC 58676 29 89.7 32 ...C.............A......T.... TCGTGCACGTTGCCGTCCTCGTCGATGCCGGA 58615 29 93.1 32 ...C....................T.... CTCGAGGTCAAGGGTTGGGTGCGCAAGGACGA 58554 29 93.1 32 ...C....................T.... CCGCCCACGCCGTCGGCCTCGCCCACCCGGCT 58493 29 93.1 32 ...C....................T.... AAATGCCGGCCGATGCTGTCCGTCATGTCGAA 58432 29 93.1 28 ...C....................T.... TCCGTTGCCTTGTGGACCTTGGGCACGG 58375 29 100.0 32 ............................. GTGCGCTCGGGGTCGTTGAGGGGCTTGTTGGG 58314 29 100.0 32 ............................. GTCTTCTCCCTCGGCATGGCGGACTCCACTCC 58253 29 100.0 32 ............................. GTGCGGGGAGGGTGCGGCGTTTGCCCTGCTGA 58192 29 100.0 32 ............................. TTCCTCAAGGGCACTTGCACCCCCGTCACCGA 58131 29 100.0 32 ............................. CTGGTGAAGGTGGCGGCGCTGGGCATGGCCGC 58070 29 100.0 32 ............................. ACCGGCGGTGTGTCGAGGCCCCCACTCCACGC 58009 29 100.0 32 ............................. ACGGTTCCGGCGCCGAGCAGCGGGACTATGTA 57948 29 100.0 32 ............................. ACGGCGTCTGCGGCGCCCAATCCCACCACCGT 57887 29 100.0 32 ............................. GTCACCGTGACGACCCGCATCGTCCCCACCAG 57826 29 100.0 32 ............................. CGGGCCGCGCTCGGTACGGCCAGCACGGTGGT 57765 29 100.0 32 ............................. GCCGTCGAGGAAGCCGAAGCGCGGGGCCGCAC 57704 29 100.0 32 ............................. GTCTACGACCCGGACCTCATCTTCCCGGGCCA 57643 29 100.0 32 ............................. GTCGACAAGGGCACCGAGTTCGACGACTGCCA 57582 29 89.7 32 ...C..........T.........T.... AACCACGCGCCGCGCCGGTTGCCGCGGCCGGT 57521 29 86.2 32 ...C....T..................AA CAGGTGGCCTGGAAGCTCAAGCGCGCCTCGGA 57460 29 89.7 32 ...C..T.......T.............. GTCACGGTGCCGTACGCGCTCCCGGCTGGGGA 57399 29 96.6 0 ...C......................... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 95.6 32 GTCTTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : CGTCCAAGACGTCCAGTCCCTGCTCACCCCACCCCACACAGCCGCAACCAACGACGACACCGACGAAGAACACTCCGAACGACGCGACGTACGCATGGTCCACCTCTGGGACCCCAAAACCGGAGCCCTCCCCGCAGGCGTCAACTACGCCACAGGAGAAACCTGATGCCCTCCATGGTCGTCATCGCCACCACCGCCGTCCCCGACCACCTACGCGGCGCCCTCAGCAGGTGGACCAGCGAAGTAGTACCCGGCATCTTCGTCGGCAGCGTCTCCGCCCGCGTCCGCGACGAACTCTGGAAAGCCGTCACCGAAGTCGTAGGAACCGGCGCCGCCCTCCTCGTCCACCCCGCCACCACGGAACAGGGGTACGCCATCCGCACCGCAGGAACCCGCCGCCGGGTCCCGGTGGACTTCGACGGCCTCACCCTGATCCGTATGACCGCCACACAAAAGGTAAAGGAAATGCAAAGTCCTTCTTAAGGTGCAGGTCAGGAAGT # Right flank : GAGACGGCCGAGAAGCTGGGCCTGACCAACATCGGTAGTTAACCAGCTGGATCCACACAAGTGGTCCAACGAAGACAGCGCTGCGTACGAGGCGGCGATCGAGGCAGCCAACGGAGCGGTGGGCGCCTACACGCCGTCATCGCCACAGAGGAGGCCAAGGCGGCGCCGGACGAGTCCGTCATCGAGGCCGCCCGGGCGGCGCAGAACCGGCTGGCCCGTGAGCGCGAAGGGCTGCGGTCGTTGGACCGCGAGCAGATCGCTGCTGCCCGCGCGCGCTACGCGGAGCTTGCCCGTGAGGTCATGGCGGTTCTGGCGTGATCGGCCCGGCCGAGGTGGAGCGGCACCGGCTGTCCCCAGAGGAGAACGAGCGGATCTTCCGCGAGCGGATCATGGCGGCCCGGTGCGGGCTGTGGTCCCCTCGGGTGCCCGGCCGCGGAGGGGGCACCCCGACCGCCCACTCCCGGCCCCACCCACTCACCTCAAGATCATTTCCGGCCTCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : TCCCCGCCGACGCGGGGGTGTTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 69009-71318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHL01000066.1 Streptomyces sp. NRRL F-5527 contig66.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 69009 33 97.0 28 ...............................G. CATCGACAACCTCGCCTCCACCAGCTGA 69070 33 90.9 28 .............................TA.G CCAGGTCGTGGAGGTTTTCGGTGAGCTT 69131 33 93.9 29 .............................TA.. GGACCGGCCCCGGCCTGCGACACCAGCGG 69193 33 97.0 29 ................................A CCCAGGAGGCCCCGGGAACGCTGGTGGAC 69255 33 90.9 28 .............................GT.T CCCGGCCGGGGGACCTTTCTCCGTCGAA 69316 33 93.9 28 .............................G.G. CCAACGCGTCCGGTGACATCACCGCGCT 69377 33 97.0 28 ................................T CCTGCCGGGCCGTGCGCTCATCTACGCC 69438 33 100.0 28 ................................. CGGGCCTGTAGACCGCGGGGGGCGTTCC 69499 33 93.9 33 ..............................GG. CGGACCCCGGTCCGGTCTAGGGGCTAGTGGGGC 69565 33 100.0 28 ................................. TTCAGAGCACCCTCAGGCGGCGTATCCC 69626 33 93.9 28 .............................G.A. ACGATGGCGCAGAACCTCTCTGGGGCCG 69687 33 90.9 28 ..............................TGT TCCACGGCTCTTCCGGGGTGCCGACCTT 69748 33 93.9 28 .............................AT.. CCGTCTCCGGGTCGCTGATGACCTCTCC 69809 33 93.9 28 ...............................GG CGGTCACGACGCGGCCTTGTCCTGCACG 69870 33 87.9 28 .............................TAAG GGGAGGGGACAGCCGTGGCACTGGCACC 69931 33 93.9 28 ............................TT... CCGGCTCCCGGTGCGCAGGGTGTCACGC 69992 33 84.8 28 .....TT......................TG.A GACCTCTCACCAGACGGGGGCGCACCCC 70053 33 93.9 28 .............................T..G GCCGCAGCGCCCGCACTCGGCGGCCGGC 70114 33 93.9 28 ..............................AG. CGCGGCGGCCCAGGGCCTTGTAGACACG 70175 33 90.9 28 .............................GAA. AGCGGCGCCCCACCGAGGTCCTGCAAGC 70236 33 90.9 28 ........T.....................A.G CGGACGAGACGCGGCCGCCGACGCGGGA 70297 33 87.9 28 ..................A..........A.GG CGGGCGGGGGCGTGGGCCAGGTGATCTC 70358 33 60.6 19 ................TTCC.ACCGAT.A.TG. CCGGAAGGGCCCTCTCATG Deletion [70410] 70410 26 66.7 0 ....................C.C.GC------- - Deletion [70433] 70436 33 87.9 28 ......A......................ATT. CGTGCCCGGACCCGGTGGAGGTGCGCTG 70497 33 87.9 28 ...........AT.................AG. GTGCCGGCCGCTGGATGGCCGTCGTCGA 70558 33 93.9 28 ..............................G.G ACCTCCAGCTCCTGGCCCAGCTCCGCCC 70619 33 90.9 28 .............................TT.G TCTCCACCACCAGGCCGTCGGCCCCGAG 70680 33 90.9 28 .............................A.GG AGAGAGAGTCGGTCGCGCTCACGCTGGC 70741 33 87.9 28 .............................TTGG CGAACCCTGGCCATGACAGCCGGCCCGA 70802 33 90.9 28 .............................G.GT GGCGGTTCACCGAGACCGGCCGACCGGT 70863 33 93.9 28 ..............................G.G ACGTGCTGCGCGCCACCGTCCGCCCCCG 70924 33 93.9 28 ...............................GG TAAGGGATGAGGTGGTGCGGATGCCCCA 70985 33 90.9 28 .............................AGT. GGCGGGCGGCGGCGGCCTGGCTGGGTGT 71046 31 84.8 28 ..............A.--...........T..A GATCGGTCGGCGGCCCTTCCGGGCGGAC 71105 33 93.9 28 ...............................TT CCACGAGCAGCGCCTGCGGAACCTCGTG 71166 31 87.9 28 .......................--....A..G TGCGGGAGTTGGCGGAGGAGACGGGTTG 71225 33 90.9 28 .............................GA.G ACGGCAGCATGGCCCGCCCGATCCCCGA 71286 33 90.9 0 .............................GT.G | ========== ====== ====== ====== ================================= ================================= ================== 39 33 90.7 27 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCCC # Left flank : ACCCAGCTCCGCGCTCAGGTACCGGCTGCCGTGCCCGGAGCAGAACTGAAACCCCGAGATCTTACCGATGTCATGCAGCCCCGCGCACAGCCCGACAACCGCCCGCGCACGCCCCGGTTCACCCGCCAGCCCCAGCCCTTCAGCGATCCGCACCCGCTGGTTCTCCGACAAGAACACATCCCACAAGTGCAGCGCCATCGCAGCAGCATCCAGCAGATGCCGGATCAGCGGATACGGCGCCAGCCCCGGATCCAACCCCCGCGACTTCCCCCACACCGACTCATCCAGCATCCCCCACTCCCCCGGCATCCCCGCCCCCTCCACCCGATCAACGGGCGCCACCCCGCTACTGGAGCCGGCATTCAACCACCCCCTCACCGACAACACACCGCAAACAACCCGTCCCGATACAGTGACCACATGCAACCCCGTACACCACACCGAATCTCACCTAAGGTAAAGGAAAAGCAAAGCCCCTCCTAGGCCGCAGGTCAGGAAGT # Right flank : GGATGGTTCCGCGTTCGATGACCTGCCGCCCGACCTTGATCGCCTGCACACCCTGCGGGTGTGGCACGTCATGTGGCTGCAGCGCATCGACGCCAAGATCGCCGCCCTCGCCAGACGGCAGACCGAAGAGGAACGCGGCCGCCGCAACCGGTCCGCACCGCCGGAGTGGATCATCGAACTCGGCATCGGCGAGCGGCGCCCACCCCTGCAGATCCATACAGGCGACTGCCACATGGCCGGCAAACGACACCGCCCTGTCGACCGGGTCGAAGCCCGCCGCCTCCTCGCCACGGGACTCGCAGCATGCGGCCATTGCCGGCCCGACAGCCTGCTCGGCATCACCGAGTTATCGAGCAACCCAGCCTCACTGCCGCCGCTGCACGCCAATCACACTCGCACCATCCGGTCCATTGCATACTTCCGGGGCGATATGCACCTATCGCCCCGGAACAGGGCCCGTCACGACGGGCCCTGTTCCCGCGGGTCGGCGGGTGGGAGCT # Questionable array : NO Score: 4.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.08, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //