Array 1 7423-9223 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBSP01000084.1 Salmonella enterica strain KW865 NODE_84_length_20516_cov_12.507872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7423 29 100.0 32 ............................. AAATTGCTCGAAATTGTCGCCTATTGGGAAAT 7484 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 7545 29 100.0 32 ............................. TCGGCAGCTACTTCGGTGTTAGGCGGCATCCA 7606 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 7667 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 7728 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 7789 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 7850 29 100.0 32 ............................. AGCGATACAATTCAGGAGTTCCAATTCTCTGT 7911 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 7972 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 8034 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 8095 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 8156 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 8217 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 8278 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 8339 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 8400 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 8461 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 8522 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 8583 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 8644 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 8705 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 8766 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 8827 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 8888 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 8950 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 9011 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 9072 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 9133 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 9194 29 96.6 0 ............T................ | A [9221] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAGCCAGGATATTTGGTCTTATCAGCAGCAGGCGGCGTTGGAATGGCTGGTGCGCCAGGGGGAGCAAAATGGCTTTACCCTACGCGAGGCGAGCGTTGATGCTTACCGGCAGCAGCAGATACGTCGCGAGAAATCCCGGCAGATGATTCAGTTTAGCAGCGTGGACTATACCGGCGTGCTGGTGATTAACGATCCCGCGCTTTTCCTGCAACGTCTGGCGCAGGGGTACGGTAAAAGCCGGGCGTTTGGCTGCGGAATGATGATGATCAAACCCGGAGATAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7645-7373 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBSP01000136.1 Salmonella enterica strain KW865 NODE_136_length_7732_cov_9.599606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7644 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 7583 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 7522 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 7461 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 7400 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //