Array 1 407601-406551 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWLN01000001.1 Pseudomonas aeruginosa strain 8 IPC1590_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 407600 28 100.0 32 ............................ AGGCATGCATATCGTCAACACCGTTGTGACCT 407540 28 100.0 32 ............................ ATCACCACCGCCACCCGTACCGCCATCACCGC 407480 28 100.0 32 ............................ ACCACCCGTACCGCCACCATCGCCGCCAGTAC 407420 28 100.0 32 ............................ ATCCGGCGCAATCGAGATGGAGCCATCGCAGG 407360 28 100.0 32 ............................ ACGAAGTAGAAGCTGTCCGGCTCCAGCGTACC 407300 28 100.0 32 ............................ ATCGAGCACGACACACCCAAGGCGTTCAGTGC 407240 28 100.0 33 ............................ GTCAGCGTTCGCCAGGGTCCGGCCGTGCGCCTC 407179 28 100.0 32 ............................ AGCAGGATGATGCGCCGAGCGCCCCATAGGGC 407119 28 100.0 33 ............................ GCCGGCGGCGTCTGGCTCGGCGCGCGGCACTAC 407058 28 100.0 32 ............................ AAAAGGGGGAGCGGGTAACGACCGCAGAGACG 406998 28 100.0 32 ............................ AGGAAGAGTCCGACATCGGCCGCGAGGGGATC 406938 28 100.0 32 ............................ TAGGATGCTCAAGGTTAAACGCTGAGTTAACC 406878 28 100.0 32 ............................ AGCGGCCTGACAAGCCCCCTGTAGCGCTGGCG 406818 28 100.0 32 ............................ TATCGTGGCTACGCCGCCGGCGGCGTGTACTG 406758 28 100.0 32 ............................ ATGGTTGATCGTCGCGCTCGTTGCGATGGGGA 406698 28 100.0 32 ............................ ATCATCATGTCGAGGCCGATCATTGTTTGGTT 406638 28 100.0 32 ............................ TGATGAACCGGATTACCGAGCGCGGCCTGGCG 406578 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GTGCCGGCTGGAAGGCGAGCGGGTGAGTATCGCCGGGCATGCGGTGCTGGTGGCGAGCGGAAGGATTCGATTGGGCTGAGGGGCGCTTCAGGAGGGGGATGACCTCGCGCATGCCAGACCTCCACATACCGAAGCCCTGATCCGCAGGGTGAATAACCGCTTGCGGTTATCCGCCTCTTATCCGGGGTATCGGCGGATACCGCCTGTGGCGGGCCACCCGAGCCTGTAGCGTCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCAGACAGGAAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAACAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGTGAATGCCGCCATAGACGGTATCCGCCGGTCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGAATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCACTAAGCAACAGCGCCCCCCTCACTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 20158-21027 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWLN01000024.1 Pseudomonas aeruginosa strain 8 IPC1590_24.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20158 28 100.0 32 ............................ AGTGCGGCAAGGTACGACGCGGACACGTCCAA 20218 28 100.0 32 ............................ TCTGGATCTCGGATATCCGGGGCAATGGTCAC 20278 28 100.0 32 ............................ AGTACCTTGCAAAGGGCACGGCCTCTGCGGCT 20338 28 100.0 32 ............................ GTTTGCGATGAATAGCGCTCGCGAGTTGTTTG 20398 28 100.0 32 ............................ TCACGCCGAACTTCTTTGGATCCGCTACTATC 20458 28 100.0 32 ............................ TTTAGGACTTTGTCCTCAAGGAACTCCCTCCA 20518 28 100.0 33 ............................ CAGTTGCGAGACGGTGGCGACCAGGGTCAGGTC 20579 28 100.0 33 ............................ GACGGCATCAGCACGGCCAGCCCAGTGTTCCGA 20640 28 100.0 32 ............................ GTCCGGGACCTGGTCCTGAGACTGGTCGTCAA 20700 28 100.0 32 ............................ TGGATGCCCACTACCCGGCATCGACCGCGCTG 20760 28 100.0 32 ............................ TGGATATCGGTGTCCCGCGGTTCGATGAAGTC 20820 28 100.0 32 ............................ TACCCCCGGAAAAGCGCAACACCGACCAACTC 20880 28 100.0 32 ............................ TATGCGCTGAACCCTGGCGACGTGTTCTGCGT 20940 28 100.0 32 ............................ TGATAATGGCAAGTACGACGAAGTTGCTCGCA 21000 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCTCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCATCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAAGGCCACGGTCAGCATGGACGACATTTCTCCTAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30302-29553 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWLN01000024.1 Pseudomonas aeruginosa strain 8 IPC1590_24.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30301 28 100.0 32 ............................ AGGCAGAGCCCGCGCCAGGTCGCCTGTTCGTC 30241 28 100.0 32 ............................ CTCAACAGGCTCGAACACATCGGATGACCACT 30181 28 100.0 32 ............................ TCGGGCATCGGTTGGCGGCCCTGGGCGATGGC 30121 28 100.0 32 ............................ GTGTTGGCGGCGTACCAGGGGAATGGCCTGGC 30061 28 100.0 32 ............................ TGCAGCAGCACACGCCGCGACCTGCGCATGGC 30001 28 96.4 32 ......................G..... AGATCGAAGCTGCCGTGTACGCAGTGAGAACC 29941 28 100.0 33 ............................ ATCAGGACGTGCCAGATGATTCCGCCAGTGGAC 29880 28 100.0 32 ............................ AGAAGGGGCACGAGAAGCAACCGCTGAAGCTG 29820 28 100.0 32 ............................ ATAGGTCGGCGTCGACACGACGGTGATATTGC 29760 28 100.0 32 ............................ AGAACCCCCTACACTGGCGGCCGCGCGAACCT 29700 28 100.0 32 ............................ TGCGACATGCTGGTCCGGGCGATCATGTCCTC 29640 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 29580 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTATGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //