Array 1 391095-389415 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUY010000001.1 Campylobacter concisus isolate 2010-34330, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 391094 30 100.0 34 .............................. CCATCTGAAAGGAGTTTATAAGGGGTATAGAAAG 391030 30 100.0 36 .............................. ATCCGCTTGTGTTACCTTTGTTCTGCCTTGTTTTGG 390964 30 100.0 38 .............................. TTTAAGCTTAATTCAAACAAATGCAGATAGCGAGAAAA 390896 30 100.0 37 .............................. TCTTTTACGCTTATCTTTTTATCATTAAGCGGTTCTT 390829 30 100.0 35 .............................. CCTGCACCTATACGCATTTCGGATTTTGGGAGAAA 390764 30 96.7 35 .......C...................... GCTAGTATTTTCAATGAAAGGTTTAATTGTTATGC 390699 30 100.0 35 .............................. TTTTACTACGGCAACAACAATATGCCAACGAAAGA 390634 30 100.0 34 .............................. GTAAAATCTATTTCATTATCTACCATTGTTTTTC 390570 30 100.0 35 .............................. GCAAGGGGTGTTTAAACCAAAGCCAACCTACGGAG 390505 30 100.0 34 .............................. AACAATTTCCTTACCTTTTTTCGCAATTGTATCA 390441 30 100.0 37 .............................. AGCCTACAAAAGCTTTGCTACTAGGCTCTGCTGTGCA 390374 30 100.0 36 .............................. TAATGTTTTGCTCGGTCGCCTCTACTTGAAATGGAT 390308 30 100.0 37 .............................. GATAGTGAGTTGGCTGATTTTTTAGAAACTAGCAAAT 390241 30 100.0 39 .............................. CTCTTGACAAAGCTCTACATCAAAAGGCGAAACACCGTA 390172 30 100.0 38 .............................. TCTTTGATTTTATGGAAGTATCATACAAGATTTTAAGA 390104 30 100.0 37 .............................. TCAGTTTTAGCAGATGAAACAACTTCACTATTTTTAG 390037 30 100.0 37 .............................. CAAACCACGCATGCCGAATTTATTATTCTCCAAAACT 389970 30 96.7 38 ....T......................... ACTAAGCTGTTTTTTGAGTTTGTCGTTTGGCACAATGC 389902 30 96.7 36 .......G...................... AGCGTTATGGGATATTTACCAAGACAGCGTAAGAAA 389836 30 100.0 33 .............................. CGAAAACTATATACGCCACGCTCTCATAATCGG 389773 30 100.0 37 .............................. TGCATGCGAACACTAAGCAAAAGCACCTACCTAAAAC 389706 30 100.0 35 .............................. TTTGTAGGGGATATCCCCTACACCCCTTAAAACAT 389641 30 100.0 35 .............................. TCTGCCTCTGGAATACCAGTTGTTGACGGAGCTCA 389576 30 100.0 35 .............................. ACAGTGCAAGAAATTCCACCTTTGATTGTTGAAAC 389511 30 100.0 37 .............................. ATGGCGATATTGGCGTAGAACAAACCGACAAAGAAGT 389444 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 99.6 36 GTTTCAAACTCCAACGGAGTAAATTCTAAT # Left flank : TGATATTAAAAAAGCAAAAGAGATTTTAAAGGATTATAGATGAAAGAAGAATTTACAAAATTTAATTTAGAAGACTATTTAACAACTGATGAATTAAGAAAAGAGTATTTAAATCAAGTTTTAGCCGATGGCGATATTGAAGAATTTAAAAGAGCATTATTTTATATAGCAAAGTCAAAAGGCATTGAAAACGTTGCAAAGAAAGCAAATTTAAATAGAGAAAGCTTTTATAAGATGTTTAAAGAGAATTCAAAGCCTAGATTTGAAAGTATATTTAAGGTTGTGAATGCTCTTGATATTAAGCTTGTTTATGCTTAGTCTATTTCATTATTATTTCTAGCTTCTTTTTTGCTGTATTGGCTGGGGTTTTGGCTTTTTGAAGTATCTATATAAAACAATATTATCGTTCGTTTGATAGATCTTTGCAAGATAGCAACTATATTATTTAAATCTCTTCTTTGAAAATCTTTGGCTTTTAAATTTGTCACTTTATGTCGTGT # Right flank : AGCACCAAAAAGCTGATTTTATAGGCATTCTAGTGCAAGAAGTCTATATTTTTTCGCCTTAAATTTGACTAAAATTTAGCCATGTACAAATACGCAGAGCCCTAAATTTCAAGCATTCTAAAATCTTAAAAAACGCTTTATTAAAATGCGATTTCACTCACACCTAAAGCCTTCATAAGGCGCGTCCTCGCAGATACACTTTTTAAGCTTATTTGCTTCGCGGCGGATCACCTGCCTCCACGTTAGCTCCCTACCGCACACCGTGAGCGTCTCACAAAGGCGCGAGATCATCTTTAGCTCGATCTTTTGCACGGCGTCGTTGCTAAATTTTATCCTGCCAGCGTCCGTTTGGAAGTCTTTTGCGGTGATCTCTTTTTTATTTAGCATGTTAAAAATCAGCGTATCGCCCAAGATCGGCTTAAAAATCTCCGCAAGATCGAGATGTAGGCTTAGCGCGCGGTAGTTTGGCTCGTGCAAAAAGCCGATGCGAGGATCTAGCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACTCCAACGGAGTAAATTCTAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 638535-637058 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUY010000003.1 Campylobacter concisus isolate 2010-34330, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 638534 37 100.0 39 ..................................... GTTCTGGGTGTTGTAACACTCAAGGGAAATTATATCCCC 638458 37 100.0 38 ..................................... AAAAATAAGCGTCTACTTTGTTACCGTATTTTACAAAG 638383 37 100.0 37 ..................................... ATTGGACTGCGGTAAAAACTGTTGGTTGGCAGATTTT 638309 37 100.0 41 ..................................... AAAAACTTTTTGACATTTTGGTTCCTTTAAAAAAATATAAT 638231 37 100.0 44 ..................................... TTTACTACAGAGTTACTATATATTCTTATTAGAGATGAAAAGAA 638150 37 100.0 35 ..................................... AGAACCATGCTGAAATAATCAGCATCATTCTCATC 638078 37 100.0 41 ..................................... GGAATAGTGCCAATTGAGAAGGAGCTAGTAGCACCATTTAA 638000 37 100.0 36 ..................................... ATTCTAGGTCGGAGCCTAGAAATTTTACCACCCTAT 637927 37 100.0 39 ..................................... GTATAAGGTTGGCACATTACGATTAATATGCGATCTTAG 637851 37 100.0 37 ..................................... ATTTTAACATTACTATATTTAAGCAACTACCTCAATA 637777 37 100.0 36 ..................................... ACTGGTATGTAGTTGATTAACTCTGGTTCATAGTCA 637704 37 100.0 38 ..................................... AAAATTTAATTTTGTCATTTTTGATCCTTTTATAAAAA 637629 37 100.0 38 ..................................... TATTCGGATCTTTCGATCCAAGTGCCATCCTGGAAGGA 637554 37 100.0 40 ..................................... TTTAAAGCATCTAAAAGCTCGTCGTTCATGATGAGGTTTA 637477 37 100.0 41 ..................................... AATATGACACAGCGCTAATATTGCGGACTTCATCCCAACGC 637399 37 100.0 40 ..................................... TATATCTACCTTAAGCCAATACCAACCTCTGTCGGTAAGT 637322 37 100.0 36 ..................................... TGTATTGCTGTCGATATAGTATTTCTTACCATCTAC 637249 37 100.0 40 ..................................... TATATCTACCTTAAGCCAATACCAACCTCTGTCGGTAAGT 637172 37 100.0 40 ..................................... CATTTTCTTGCTCTTAGAAAAATCACGATAGGGCATAAAA 637095 37 94.6 0 ................................A...A | T [637060] ========== ====== ====== ====== ===================================== ============================================ ================== 20 37 99.7 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCATTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATACCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACATATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : AAATGACAAAGCGTAGGCGCTTTATGTTATAAAAAAATGTGTAGTGCTTATATGCTTGTTGAATAAATTTAGATAAGAAGATGTGAGATGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTACTTCATGGCTTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAACGTGTCCTTAGTCGTTTGGACTTTGATATAGCCACCAAAGCTTTGACCCACTTTTTGGTGAGCACGAGCAGATGAGTAAGACCTGCTTGAAGACGATGAAGAAGACTTTGAATAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTATTTTGTTTTTACATAGACTACTTCAAATGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 9245-10825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUY010000004.1 Campylobacter concisus isolate 2010-34330, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================================== ================== 9245 33 100.0 47 ................................. AATCCTAGAATATGTCCTAGGATAAAAAAAGCGTTCCTGCAAAATTA 9325 33 100.0 44 ................................. CAATTCTTTGTTCATTTTTTCTCCTTTGTAAAAAATTTTGATTA 9402 33 100.0 45 ................................. GTATAAACAGAGCCCTTACCATCATAACTAACAACTTCTGGATTA 9480 33 97.0 44 .................C............... CATACAGGACATATTCTTTTACTGTCTGTAAAACACGGCAATTA 9557 33 100.0 44 ................................. GAATATAGGCTAGAAGATATTAAAGAAGAGTGGTTGAAAAATTA 9634 33 100.0 41 ................................. AACCGTTTTTTGGTATATAAATTCATCATAGTTGTTTATTA 9708 33 100.0 43 ................................. AGTTTGTCTTCTATAAAACCTTCTCCATCTAGATTAAATATTA 9784 33 100.0 46 ................................. CTGAAAAAGCATTTTTATATGCTTCACGCTCATAAATAACGCATCC 9863 33 100.0 49 ................................. CCCTCGCTTACCTTGATAAACTCTAAGCGTGGCACTGGCTTTGTAATCT 9945 33 100.0 46 ................................. TACCAAAACGGCTTTTTACCGTCTGGGTATTGCATTTTGGCAATTC 10024 32 93.9 41 ....T.....-...................... TCGCCCACATATCACAAAAACGCCGTTTTTCATTTGCATTA 10097 33 97.0 30 ............A.................... GATAGTTTCTAATGTGAAAAATTCCCTCGT Deletion [10160] 10160 33 90.9 44 TGG.............................. GTATTTATCTCTTCAGATTGTTTATCAAAGAAACTCTCTAATCT 10237 33 87.9 45 ...............AG....A.........G. CTAAAAGCAGGAAAAAAATAGAAATAATCAACTAGCACGAGATCT 10315 33 100.0 47 ................................. TTATTTACGTTGTCAAATTCTCCAGCAGCAAAAGCTGCACCTAATTA 10395 33 97.0 43 ..........C...................... ATTATATCGTTTGCTCTGCTGAAGGCATCTTTTTGGGACATCT 10471 33 100.0 45 ................................. GCAATTCTCAGCGTAAAACTGATAATCTTTTTCATAATCGCATTA 10549 33 97.0 42 ..........C...................... GCAACTAGTAAGCTGCTAACTAAAACCTTTTTCATTATATTA 10624 33 100.0 45 ................................. TAGTTAGCCTTATACCACTTAGCTTTAGCTTCTGGTGAAGTATCT 10702 33 100.0 58 ................................. TCAATTTTTATAAAAACTACTTCTACTTTGGCACGTGCGCTTCTTTCGGCATTTATCT 10793 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= ========================================================== ================== 21 33 98.0 44 GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CTTTCAAACATCTATTTAGATCAAATGGATAAATTTCTTGAGCATAGCAGTATAGAGTTTGTAAGATACGCAGATGATTTTGTTCTATTTTTTAGCTCACGTGAAGCCTGCGAGCAAGGGCTTGCCAGACTAAAGGACTTTTTAGCGACCATAAATTTATCCCTAAACGAAGCCAAAACATCTTTACACGACAAAGATAGCGAATTTACCTTTCTTGGCGTAAATTTCAAAGCTCATGAGCTAAGCATAGGCGAGGATAAATTTGCACGCATTTTGGCAAAACTCACAGCCTCGTCTAAAAAGCCAGAGATCGCCCAAAGCGTAGAGAGCATAAACGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGTAAAAGAGTGCGAATTTAAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAGAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAATCGTTTTTTGGGCTATTA # Right flank : TAGACATATCTATCGAGCATAGTTCTCGGGCATTAATTCATAGATACATTTTATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGCTAAATTGACTATATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGTTAGATACTTACTATAAAGGTACTGACATATGGGGCGCTTCCTCTTTTGCTCTTGGCTTTGATGGCAAATATGGCTTAGTGCAAGCTGTTAATGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //