Array 1 2151-280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXFI01000205.1 Xanthomonas oryzae pv. oryzae strain DXO-246 contig_205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2150 31 100.0 34 ............................... CAGTCCACGCACTAGCTCGGCACGGGTCGCATCG 2085 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 2019 31 100.0 34 ............................... ATCTACTCTATGCCCTGAGGGACAAGAAGAACCA 1954 31 100.0 35 ............................... AATACAGGTTGGGACATATGCCAGTATCTTTACCA 1888 31 100.0 35 ............................... CTGTGGGACACGGCGGATATGGAGATGTGGGAAAG 1822 31 100.0 35 ............................... TTGTCATACACCCTCAGCGTCCCTGCACTGTACTC 1756 31 100.0 37 ............................... TGCAAGAGTTGATCAAGTCTGCAACTGATTGGCACAC 1688 31 100.0 36 ............................... TTACCAAGCGCCCTTACAATAGTCAGAGTTTGATCC 1621 31 100.0 36 ............................... TGCATTATGGTCAGTGGCCCACCAAGCAGCTAGACC 1554 31 100.0 35 ............................... TGCTGCATGCTTAGCAGTTGTAATTCCCTCTGCCT 1488 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 1421 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 1356 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 1292 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 1227 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 1162 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1096 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 1030 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 965 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 900 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 834 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 768 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 704 31 96.8 36 .............A................. ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 637 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 572 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 507 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 440 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 375 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 310 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 29 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCCTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCACGCCACGGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //