Array 1 189-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMQQ01000088.1 Salmonella enterica subsp. enterica serovar Weltevreden strain SL_58_S327 contig00088, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 188 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 127 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCGAAAAAAGGAACACACATGGCCTTAGAAGATG # Right flank : GACGCGATGTCGGTACATGATATGACCACAACAGTGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 171283-173264 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMQQ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain SL_58_S327 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171283 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 171344 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171405 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171466 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171527 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171588 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171649 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171710 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171771 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171832 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171893 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171954 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 172015 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172076 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172137 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172198 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172259 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172320 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172381 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172442 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172504 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172565 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172626 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172687 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172748 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172810 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172871 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172932 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172993 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173054 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173115 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173176 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173237 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189772-191631 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMQQ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain SL_58_S327 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189772 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189833 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 189894 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 189955 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190016 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190077 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190138 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190199 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190260 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190321 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190382 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190443 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190504 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190565 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 190626 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 190687 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 190748 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 190809 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 190870 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 190931 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 190992 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191053 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191114 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191175 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191236 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 191297 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191358 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191419 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191480 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191541 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191602 29 93.1 0 A...........T................ | A [191628] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //