Array 1 636570-638716 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025216.1 Streptococcus thermophilus strain DGCC 7710 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 636570 36 100.0 30 .................................... TGTTTGACAGCAAATCAAGATTCGAATTGT 636636 36 100.0 30 .................................... AATGACGAGGAGCTATTGGCACAACTTACA 636702 36 100.0 30 .................................... CGATTTGACAATCTGCTGACCACTGTTATC 636768 36 100.0 30 .................................... ACACTTGGCAGGCTTATTACTCAACAGCGA 636834 36 100.0 30 .................................... CTGTTCCTTGTTCTTTTGTTGTATCTTTTC 636900 36 100.0 30 .................................... TTCATTCTTCCGTTTTTGTTTGCGAATCCT 636966 36 100.0 30 .................................... GCTGGCGAGGAAACGAACAAGGCCTCAACA 637032 36 100.0 30 .................................... CATAGAGTGGAAAACTAGAAACAGATTCAA 637098 36 100.0 30 .................................... ATAATGCCGTTGAATTACACGGCAAGGTCA 637164 36 100.0 30 .................................... GAGCGAGCTCGAAATAATCTTAATTACAAG 637230 36 100.0 30 .................................... GTTCGCTAGCGTCATGTGGTAACGTATTTA 637296 36 100.0 30 .................................... GGCGTCCCAATCCTGATTAATACTTACTCG 637362 36 100.0 30 .................................... AACACAGCAAGACAAGAGGATGATGCTATG 637428 36 100.0 29 .................................... CGACACAAGAACGTATGCAAGAGTTCAAG 637493 36 100.0 30 .................................... ACAATTCTTCATCCGGTAACTGCTCAAGTG 637559 36 100.0 30 .................................... AATTAAGGGCATAGAAAGGGAGACAACATG 637625 36 100.0 30 .................................... CGATATTTAAAATCATTTTCATAACTTCAT 637691 36 100.0 30 .................................... GCAGTATCAGCAAGCAAGCTGTTAGTTACT 637757 36 100.0 30 .................................... ATAAACTATGAAATTTTATAATTTTTAAGA 637823 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 637889 36 100.0 30 .................................... TGCATCGAGCACGTTCGAGTTTACCGTTTC 637955 36 100.0 30 .................................... TCTATATCGAGGTCAACTAACAATTATGCT 638021 36 100.0 30 .................................... AATCGTTCAAATTCTGTTTTAGGTACATTT 638087 36 100.0 30 .................................... AATCAATACGACAAGAGTTAAAATGGTCTT 638153 36 100.0 30 .................................... GCTTAGCTGTCCAATCCACGAACGTGGATG 638219 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 638285 36 100.0 30 .................................... ATAACTGAAGGATAGGAGCTTGTAAAGTCT 638351 36 100.0 30 .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 638417 36 100.0 30 .................................... AAGTAGTTGATGACCTCTACAATGGTTTAT 638483 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 638549 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 638615 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 638681 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 887984-888236 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025216.1 Streptococcus thermophilus strain DGCC 7710 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 887984 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 888056 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 888132 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 888207 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : CTTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 958660-957897 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025216.1 Streptococcus thermophilus strain DGCC 7710 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 958659 28 100.0 33 ............................ TATACCTATATCAATGGCCTCCCACGCATAAGC 958598 28 100.0 33 ............................ CGACACCACTAGGGCGAGTCTGAGCGCCCCCAG 958537 28 100.0 33 ............................ CGCAACCCCTCCTTAGACATGGGAACAGTACTA 958476 28 100.0 33 ............................ CTGTATTATCGGCGAATAGATCAGATTCTTCTG 958415 28 100.0 33 ............................ ACCCTTACAAGGCTGATAGACCTTTGTCGTTTG 958354 28 100.0 33 ............................ CTCGTTTAAATTTGTAGTTATCATTAACAATAT 958293 28 100.0 33 ............................ CAAGGTAAAATTGCCGACAATGTTGGAACGTTG 958232 28 100.0 33 ............................ TATACATTACCTCATTTCCAGCTGAGAACATTG 958171 28 100.0 33 ............................ TCAGCGCCTCGACAAGCATCAAGAAGAACAGAA 958110 28 100.0 34 ............................ TGTACTGGTTGAGTATTCAAGGTAGGTGTGCCAC 958048 28 100.0 34 ............................ ATACTCAACTTCCTTACCCTTAACCCCTTTCAAA 957986 28 100.0 34 ............................ TGGTCGTGTGTTTGGCATTGGCTCAATGGGAACA 957924 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================== ================== 13 28 99.7 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATCATTGAGATTGGAGCTGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGGAGAAATTACCTCCTACAATTTTTAAATTGACAGGTATTTCTAAATCCTTATTAGATCAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTGTTTATTGGTGATTTAACTTTAGTTGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTTGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGGATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGTCATATGGAATCGAGGATTCAGTTCCTCATAGAGCTTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTCCATTGGGATCTTTTAGT # Right flank : TACAAATTTAGGTCATATGGAGATACGACAATATCAATCGATTGGTTGAGGTCTCTTTTTAGATTTGTTAATTAGTTGATTACTTTTTAAGTATTGCCGTTGTAAGCAGCATATCTTAAAGATAGAGATGCTGTAAAACTTTCTCATAGACTACTACATATTGTTTTAGAGCTATGTTTTTTCTAATGGTTCCAAAACAATCGCTTTCTCTTTATATGCCCACCAAAAAAAAGCCAGTGGCTCTTTTTAAATATCATCTTAATAACCAGGTTCAAAGATTTCAATAATTTGAGTCAGATAACCTGCATGTAAACCGATTCGATAGTCAACATTTGGCAAAGTCTTAACCAAATCATTCAGTTCTTTATCTTTGCTAAACTTATCAGCCAAAACTGGTAATTCAACGACAAGGAGTTGTGAGTGATCTAGTTGGAGGTAACTACTGTTGACCTTGATATCAGGACGAAGTAGTTTAAATATCGCTTTATCCGAAGTTTGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1372793-1371965 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025216.1 Streptococcus thermophilus strain DGCC 7710 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1372792 36 100.0 30 .................................... AAATTCTAAACGCTAAAGAGGAAGAGGACA 1372726 36 100.0 30 .................................... TACTGCTGTATTAGCTTGGTTGTTGGTTTG 1372660 36 100.0 30 .................................... TTCCTCTTGTAAACATTTTATTAATAATGT 1372594 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 1372528 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 1372462 36 100.0 30 .................................... CGATGGAAATGATGGCTTGCCAGGTAAGGA 1372396 36 100.0 30 .................................... AATGGGAAAGTAGCTATATATGATCCAGAG 1372330 36 100.0 30 .................................... GAAGGCACAAGAAAGTCAAATGCGTAGCGC 1372264 36 100.0 30 .................................... AATTTTAACAGATATAGTGTAATCGGTATT 1372198 36 100.0 30 .................................... CTATTACTATACTTCCGAAGAGATTGCAGA 1372132 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 1372066 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 1372000 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //