Array 1 26769-27037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMOT010000174.1 Rahnella sp. C60 NODE_15_length_136083_cov_40.036321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26769 28 100.0 32 ............................ GGTAGGTTGAAATCCAGATATGCGGGGTCGCC 26829 28 100.0 32 ............................ GCTAAAGTTGCAGACAAGCTGATTGAAGATTT 26889 28 100.0 32 ............................ ATAGACTGAGTTTCAAGATATGCCGTGTAACG 26949 28 100.0 32 ............................ TAAGGAGTCGGGGGCTGTGGACTATGGCTGTC 27009 28 89.3 0 ....................T.C....T | C [27033] ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACAGAAAGATAAAAGAGATTATCGCGTTTATCCTGTGGGAACGTTTCGAAATGCTGCGCTGCTCACTGTATGCCTCCACGGAGGAAGCCGCATGAACAAAGACTGGCATCAGGCCGATATTATTGCGGCCATTAAAAAGAAGGGCACCACGATGGCGGCAGTTTCACGCCGCGCAGGGTTGTGTTCCTCAACGCTCTCGAATGCGCTGACCCGCAAATGGCCGAAAGGTGAAAGACTGATCGCCGAAGCCATCGGCGTAAAAGCCGAAACCATCTGGCCGAGCCGCTACACCGAAATCAAATACAACTGAGATCAGCTCCCTCCCCTGCAAAGGGGAGGGTTGGGGTATTAATGGCATCTGCGAACTAACCCTCTTTTTTGCACTTTCGCTAACCCATTGATTTTACTTAATCACTCAGATCATCAAAAAAAGAGGGTATTTTTGCCCAAACAGGCATAATCTTTTGCAGTTCAAAGGATAAACCTGAAAACGCAACA # Right flank : TGCAATAACTCACTGTTTTATCTTTAAATAAATCTCCTCTCCAAAACCCCTCCAAAACGCTTCCCCAAAACCGAGCAATAATTAAACGGCGATGACAACCCACTTTTCTTTGCGCTCGTCATGATAGAGCTCAGTCATCTTCGCTGAACTATGCCCCAGCAATTCCTGAGTGTTGATCCCCTGAGCTTTATACAAGCGTTCAGAAAGAGAACGTTGTTCGTGAAATGTCGGCGCGGTTTTACCTTTTTCAATTTTTATATTTGCGCAATCCCGGGCTTCGGCGAATCGTTGTGTTAATGATCCTTCAGCCACTGGTGAACCCAGCGTTGAACCGCCGGAGAGTGTTGAATTATGGACAAGATGTTTACTCAGCACGCGGTCGCGACATTTGTTAATCACATCCCGAACACTCATGTTGATGGCGTCACATCGCAACGAGAGGGGGATCGCTATCCGGATTTTGCCTTTACCCTTTCCCTGGACAACATGAAGCATGTCAT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 71356-71922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMOT010000174.1 Rahnella sp. C60 NODE_15_length_136083_cov_40.036321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 71356 27 89.3 32 A..-G....................... GAAACACGTACTTTTTGCCGGTGTCAGGGTCA 71415 28 100.0 32 ............................ TAACGCAGGAGAGGGGCTTAACAAGTACATCT 71475 28 100.0 32 ............................ AATCGCGCATGGCGTAAAGCCACGATTAACTG 71535 28 100.0 32 ............................ ATGCTGAATGTCAGACTGATAGCGGCCTAGCG 71595 28 100.0 32 ............................ AACAATCACAGACCACCGGCGCTGGACGTGTA 71655 28 100.0 32 ............................ CATGTCACAGCGTCAGTGTTGGGGTCGTAATG 71715 28 100.0 32 ............................ TGCTCTGTATGGGCTGGCTGTGGGGTGGTGTA 71775 28 100.0 32 ............................ GGCCGCAGGTCGGGAGCCGAAGGGGGCCATGC 71835 28 100.0 32 ............................ GCGTAGTCACCCGGGATGGCTTGTACATTCCA 71895 27 75.0 0 ............T.T..T.-A.G.C... | C [71921] ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAAACATAAACAACCCCATTTCATTATACTGGTTGTATGTGCAATATAATTAAATTTTCAACCGATCAACCGATGACATCACTTTAAGCGATGCAAATTTATCGTGGAGCGACTGAGGGGAGATTTCCCGATACACCTTCCCATAATAGACGTATTGAGCCTCAGCTAAGCCAGAATTCTATGCGTAACGACTATTTTACCGGTTTAGAAGTTGGGAAAACTTCATAATTTCGGTCTTTCACGATTTGTAACCTACTGAGATAAATAGGTATAAATACCTATTTATATTATGAAGTTTTGGCATAACTATATGGATCATCTAAAAACTACGCAGGATTTAAAATCCATTATGCAGGCTCCACCACATCCAAAAAAACCTCCCCAAAACCATTTTCAACTATATGAAATAAAAGGAATTTATTTAACGTTTAAAAGCATGCGTTTTGAAGTGGAAATGTGATTTATATATATGATTTTTAAGGTTTAAGTTTGGTTTTCGC # Right flank : ATACGTTGCAATTAATAAATTGCTCAGCTACTTAATGAATGGGATATATATCACATCAGTGAGAGGTTTAAATATGGCACCCTGTTTTAGGTGTTTTATTAAGCTGAAAAGATAAAAGCAGATGTTATGTTTTTATGAAGCTACTCCCGTTATATTGCAACATCAAATCAACAATGCCTGAAAGCGGTAATTCCATTATTGATATTTACCCTGGTGGCGTTATTTTTATACATGAATTTTGATTAAATCAGGGAATGATAACCAGATGGCTAACGCATTGATGCCTGGCGAGTTAAAAACGATTCTGCATTCTAAACGGTCAAATATTTATTACCTGCAATATTGCCGTGTATTAGTGAATGGCGGGCGGGTTGAATATGTGACGGAAGAAGGCAGGCAGTCGTTGTACTGGAATATCCCTATCGCCAATACCACGGTAGTGATGCTGGGAACCGGCACGTCAGTGACACAGGCGGCGATGCGTGAATTTGCCCGTGCGG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //