Array 1 162360-160805 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMT01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462409, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162359 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162298 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162237 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162176 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162115 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162054 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161993 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161932 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161871 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161810 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161749 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161688 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161627 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161566 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161505 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161444 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161383 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161322 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161261 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161200 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161139 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161078 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161017 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160956 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160895 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160834 29 93.1 0 A...........T................ | A [160807] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180971-178867 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMT01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462409, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180970 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 180909 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 180848 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180787 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180726 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180665 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180604 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180543 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180482 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180421 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180360 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180299 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180238 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180177 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180116 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180055 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 179994 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 179933 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 179872 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 179811 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 179750 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 179689 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 179627 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 179566 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179505 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179444 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179383 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179321 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179260 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179199 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179138 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179077 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179016 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 178955 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 178894 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //