Array 1 718-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDPB01000001.1 Limosilactobacillus panis DSM 6035 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 717 30 100.0 37 .............................. ACTTAACTCGGTTCCAGTCAACGTGAGCTAATGTGTA 650 30 100.0 35 .............................. CTAACAACTTGCTTAATTTCAGTCCTGTTCTTAAT 585 30 100.0 37 .............................. CATAATTACGATTGGGGATATGATCCACAAAATGAAA 518 30 100.0 38 .............................. CTCAGCTAGTCAAGTGCAAGCTTAGGAGGTATAAATTA 450 30 100.0 37 .............................. CCCAATCATAGACTTGGTCATCATTGATAAGTCCTTG 383 30 100.0 37 .............................. GCTAAGATTATCTTGAAAGAATGAGTGATGAATACAG 316 30 100.0 37 .............................. CTCCATTAAAGCGTCGTCCCTGTGGTCATAAACACTT 249 30 100.0 36 .............................. CGATAAGCCACGCGTTGAAATCGAGGTGAAGGAAAT 183 30 100.0 37 .............................. CCGTAGTTCCGGTAAGGATTGTCAGGGTCCTTTTTGT 116 30 100.0 35 .............................. GTCGTCGATGGCACTGGTCAGATAGGTCATTAGAT 51 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 100.0 37 ATTTACATTCCACTTCTATTAGATAAATAC # Left flank : GAACGAAGCCATGCCAGATATTGAGTTGTCTCAAGCACTGGTATGGCTTCTAAATTCGTTAAAAACGATTATTAATCATGAAGTTTATGCAAGAAGAGCCCAAATTATTCAGATGATGAATCAGTTCTTCACATTTTTGCCGAAACGGTTAGTTTCGCTGTTAACAGCAAGCTAAATGGTTAAATTAATTAAAATATGCCCTGTGATACCAAGGGATCAGTCTGTCTTCATACTTTCAAGTTTCAGATAAATACTAAAATGTAAGTAAGAATAATAAAGTAGTATAGG # Right flank : CCCCCCGATTCCAATTGTGGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCACTTCTATTAGATAAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 21-1046 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDPB01000113.1 Limosilactobacillus panis DSM 6035 contig_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 21 30 100.0 37 .............................. CCGTAGTTCCGGTAAGGATTGTCAGGGTCCTTTTTGT 88 30 100.0 35 .............................. GTCGTCGATGGCACTGGTCAGATAGGTCATTAGAT 153 30 100.0 37 .............................. CCCCCGATTCCAATTGTGGTAAATGCAACTTTAGAAG 220 30 100.0 37 .............................. CTGGTCTTGAATCGTGATATGAAAACTAGTCTTCGGC 287 30 100.0 37 .............................. CCAGACCGCTTGATTACTAAAGACGAATATATGGATA 354 30 100.0 35 .............................. TAATATTAATCCTCAATCCAGTGGACTATTAACAA 419 30 100.0 36 .............................. TTCGGTTTCACCCAAGATCATTTCAGCTCCTTCAGT 485 30 100.0 36 .............................. ATTACCAGGATTGCCTTGTACACCCTGTTCTCCTTG 551 30 100.0 36 .............................. TGCAAGGCATAGCAAAAGCCCGTGCAAGCCAGCTAG 617 30 100.0 36 .............................. ACAGATCCCCCTTATGATGTTCACGCCAGAAAAGGT 683 30 100.0 36 .............................. TTAACCGTGATTGCTTGGACGCTGATTCCTTTTATA 749 30 100.0 37 .............................. TGGCTAATTGACGATGACTTGGATCCACCTCATTAAT 816 30 100.0 36 .............................. GTAGCCCCTAGAAGTAGCATTCCTAACCAAAATTTT 882 30 100.0 37 .............................. CAGAACTGTTTGTAGCAGCAAATGCTGTCTCGGTAGT 949 30 100.0 38 .............................. ATCTCATCGCCCCAGATTTGTAACCACTTTCCTGTCTT 1017 30 80.0 0 .....................CTG...CTT | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 98.8 36 ATTTACATTCCACTTCTATTAGATAAATAC # Left flank : GAAATCGAGGTGAAGGAAATA # Right flank : GAAAGCCCTGAATTGCAATGAAATCATTGTGGTTCAGGGCTTTTGGACGAAAAAAATAAAAAACGCAAGAACTCTTACGCTATACTTTAAGTGTCAAAATCAAAGTAGAAAAGAGTCTTGCGCTATGCAAATTATAAACCATTTCAGTACTGAAAACGATTCTCAAAACATTATTTCTCACTTCTTAAGCCTAATTGGTCTAGCTAAGCTAACTCACAGGGTGAATTTTAAGCGTCAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCACTTCTATTAGATAAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 247-739 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDPB01000148.1 Limosilactobacillus panis DSM 6035 contig_148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 247 30 100.0 37 .............................. ATCCTTGGGCAGGTATGGATTGCTCGGGGTATGTTTC 314 30 100.0 36 .............................. TGATTCATTTACTACTCAAGCTCAACTAGCTTTTGA 380 30 100.0 36 .............................. GACTTTAGCTTCGGCTATTAAAAAGCCCCAAGTTAA 446 30 100.0 36 .............................. GACCTAGTTATTACTCATAGTATTATCTTTTATACC 512 30 100.0 36 .............................. TTAAAGCACAATCACCATAAACGTAGAACACTTGTT 578 30 100.0 37 .............................. AGTTCCAGGATAGTCAACTGCAACAGCTCAACGTGGC 645 30 96.7 35 .......................A...... GGATCACCCCCACATACATGTGGGATACACTTAAA 710 30 86.7 0 ...................A...CA.G... | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 97.9 36 GTATTTATCTAATAGAAGTGGAATGTAAAT # Left flank : AATTCCGGCGATAATTCACCAACTTGGTGAGTTTAGATAGACCAATGAGGGAAGTAAATTGATGAACAATATTGTGAAGCTCGTTTTCTGTATTTTTTTGTCTTATAATATTCATGACGTAAGTCTCCTTTGTATCTTGGTTTTGGTCGACTAAAGTATACAACGCAGGAGAGCTTGCGTTTATTTTTTTGCCAAAAAAGCCAATAACCACACGCCTTTGGCGTGATTATTAGCTTTCAAGTTTCAG # Right flank : TTATAGTTACAAAAAAGAGGTGCCCCATGGCAACCAAGCTAGACAAACAATTCACCCAAGACGTCCTAAACACAGTGGACTTAATCCCGTACGGGCGCGTCACAACCTATGGCCAGATTGCCCGCATGATTTGCCGCCCGCGCAACGCCCGCCTCGTTGGTAAGGCGCTGGGCAAATTTGGCGGGTGCGGTAAGCATCCCTGCCACCGGGTCGTCACTGCAAACGGTCGGTTAGTGCCTGGCTGGATTGACCAACGACCCATGCTAGAAGCGGAGGGGGTGCCGTTCAAAGATGCGACCCATGTCGACATTCAAAAATGTTTTTGGCGCGGCATCTAGTTCCCGTAACCTGGCTCCGTGGCCGATTCCACGCTATGCCGCCGTCCAGCGCCAGACCAAGAATGGCTACGTCCAGGTCAAATACACCTGGGTAGCGGCCGACTGGCATTACGAGGCCCGCTGGCATAGTCGGGTCCCCACCGCCCAAATCATCACCTACCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTATCTAATAGAAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //