Array 1 178340-176691 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029462.1 Megasphaera stantonii strain AJH120 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 178339 28 100.0 32 ............................ TTCAGATTCAGCATGTTCATAATACGTGCGAA 178279 28 100.0 32 ............................ TTGACTAATCGAGGTGACAAGGGGCCATTTGC 178219 28 100.0 33 ............................ AAATTCTTTTTAAATTTCCGCTGACTATTTTTT 178158 28 100.0 32 ............................ TATACAACGTCCGCAAGGGACGTCAACCGGCA 178098 28 100.0 32 ............................ TTGGTGAGTTTGACGAGGACAAGGGTGTAATT 178038 28 100.0 32 ............................ TCTCGCTGTCAACCGATTCAAAGCTGTTTGAC 177978 28 100.0 32 ............................ TGATGGAAAAGGGAGAGGGAAACATGCCATGT 177918 28 100.0 32 ............................ TGGGAAAAAATGGCCGAAGCCGTCGGGGAACA 177858 28 100.0 32 ............................ AAGGTGTAAATTGGATTTACGAAGGCGGATTT 177798 28 100.0 32 ............................ AAGGTGTAAATTGGATTTACGAAGGCGGATTT 177738 28 100.0 32 ............................ GTATTTCCGGGGACGATGGCATTTGCTAATGC 177678 28 100.0 32 ............................ GTAACGCCGGTTAAGCTCGTCGTCATTGTGAT 177618 28 100.0 32 ............................ GTCGTAGACAATGTGCGGAGCGGCTTGACATC 177558 28 100.0 32 ............................ GGTGAAGGCGGCGTAACGATTGGCGGCTTTTG 177498 28 100.0 32 ............................ AATGACCGTCTACCTTTTTATCGCCATCAGTA 177438 28 100.0 32 ............................ GAACGACGAAAAAACTAGATGTCATCGATATG 177378 28 100.0 32 ............................ GAACGACGAAAAAACTAGATGTCATCGATATG 177318 28 100.0 32 ............................ AACAAGACTTCAAGGGATTGATCCCATCCTAA 177258 28 100.0 32 ............................ ACATCTTTGTATTCGTCCGAAGTTTCCCAAAT 177198 28 100.0 32 ............................ AGTACACCGGTAACATAATCAATCACCATAGC 177138 28 100.0 32 ............................ ATTGTCGCCGTCACGGCCCGCCGCAGCTTTTC 177078 28 100.0 32 ............................ TCAGTCGCAGCACGCTTCAACACTTCAACAAC 177018 28 100.0 32 ............................ TTGCGCAGTTAACCGATTCAAAGCTGTTTGAC 176958 28 100.0 32 ............................ ATTAGGAAATTACCGCCGTCGTAGCCCAAATG 176898 28 96.4 32 ..........A................. TTCAACGGCAGCAGCAAAAAAATCCAAATCAC 176838 28 100.0 32 ............................ GCCGACAAGTCTTGTGCGGATACGGCCATGTT 176778 28 100.0 32 ............................ AGCAAAACGAAGAACTCGGCCGAATGATTGCC 176718 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTATCTGCCGCATAGGCAGTTTAGAAA # Left flank : TGGAAATGTTGAATATAAAGGGTGTATTGCGGCGTTTTGCTGATTATGCTGATATTGGAAAGATAAAGAAAATACCATATAAAAAGATAAAAGGCTATGCTGTGTACAGCCGATATCAGCCAGACAGCTCCGTCCATCAAAAAGCAAGACGGTACAGCCAGCGCCATCCTGATACTTCCTATGAACAGGCTCTCCAGATTATGAAATCAAAGAATCGGGCGACGCAGCTGCCGTATATTCAGATGTGTAGCATGACGAACCACAATCCATTCCGATTGTTCATTAAACGGACGAAAGCTGAACCAGGAGAGAAAAATCATTTTGGCAGTTATGGATTGAGTCCTCATTCCGCAGTACCCGAATTTTAACCAAAATAAAATGAGTAAAGGAAAATCCTTGGAAATATGCGGATTTTTGCTATCTGGAAAAATTTAGGGTAAAATAAGGAAAACATACTGCCATGCCAGTATGTATGCCGTATGGCAGTATGTTTTCTTACA # Right flank : ATTGAAGTTGTGTAAAAAGTGGGCGAAACGAATCATTCGGCTGCGTACATTGGAAGAAAATGGCGGTAGTATCGGATTATGTGCATGATGCCGATCAAAACTGCCGAAGGACGGGAAGCAAAAGGATACTGCGACGTCCTCATCAAATAAATATCATCCACCACTTGATACTGTCGGGAATGTATAGGGGAATGACTCTTTTCATTTTCTATGACTCTTTTCATTTTCTATGACAAAATGAAGCCGTTCGTACAACCATCCGCATATTGACAGGCTCTAGGGGGCATGCTATAGTTAATTAAAATCTATTTATATGCAGGTCAGGTGTCGCAGACTTAATAGAGAAGTCCGGTGAAACTCCGGCGCGGTCCCGCCGCTGTAACGAGGAGCGATGCTGCAATATGTCACTGTACCCCATTGGGTATGGGAAGGCGCAGCGGAGCGATGAATCTGAGCCAGAAGAACTGCCTGACTGATAATCACCGATAGACCTGCGAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGCATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 187553-187190 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029462.1 Megasphaera stantonii strain AJH120 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 187552 32 100.0 35 ................................ CGAAGCCCGTCATCAGACTATCTAAACTCATTTAC 187485 32 100.0 34 ................................ ACAAGTTTAATCTGTGCAATGCGGTCGCCGTCGT 187419 32 96.9 34 .............T.................. GATTTCGTCTTTCAGAAAGCGGATACCACGTTCC 187353 32 96.9 34 .....................C.......... TTCCTGCGGGCTGTCAAACGGATTGGCCGTTACA 187287 32 93.8 34 .................A...C.......... GTCGCGCTGTGCATGACGACTGCTGTCAGGTTTC 187221 32 87.5 0 ............A..G.A...C.......... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.8 34 GTCACTTCTCGTGCGAGGGTGTGGATTGAAAT # Left flank : ACTAACGATTCCATATTTGTGTTGAAAAAGTCTGTACTGAGAGAAAGAATCTGTTGTATAATGTTCATGAGAAGGACTCCTTTGCGTGAGATTGTGGTGATTTCATTATACCAAAGAAGTTCCTTCTCTTTTTATATGTTCTTCACTTTTGTGCAGTAAAGTTTTCCCACAATTATTTTACACTAACTGGCCGAGACGCGGGGAAATGGGGGAGGATAAAATGCTGTCGGATTTAGCGAGATGTGGGACAATGTCGATCATAATGAGATGAACGGTAGAAAGGATTCATCTGGTATAATAAAGATAGCCATACGGATAGAGGAAAACATCATAAGGCCGCTTGTGCGAACCAGAAGTATGCGGCATTTTCCCTTTGGTTCCGCACTGACATATATGGAACGATGCTGTTTGGTGATGCAAAAAAGTGGTATAAATTACTAAATACAGTTATTGATGCCTATATTTGCTGAGGTTGTTTTTGTAGTATACTAAATGTAGCA # Right flank : GTTTAAACACTGACAATACTAGGTTTATTCAATATGAATTCTGCAAGCATTTTGACCAGTCAAGAAGCCCCGCAACATGTTTCGTAATTGAGAGGCTTCTTGACGAATAACAGTACTAATAAATAAAATAGCAACACCTTGCCTTAAAGAATATCTCTGCAAAGGATGAGATGCCCTATGAAACAGAACCTAACGTCTTCCGATTTAAAAACGATTCTTCATTCCAAGCGAGCCAATGTCTTCTATCTGGAGAAATGCCGTGTCATGCAGAAGAACGGCCGTATTGTCTATTTGACAGAGACGGAAAAGGAAAATTTGTACTGGAACATCCCGATTGCCAATACGACGGTAATTTTATTGGGAACAGGTACGTCTATTACGCAGGCGGCTATGCGGTTATTGGCCAGTGCCGGCGTTCTGGTTGGGTTCTGTGGAGGAGGCAGTACGCCTTTGTTTGCCGGTTCGGAAATAGAATGGCTGAATCCGCAGAGCGAATACAG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCTCGTGCGAGGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 3 1368640-1367741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029462.1 Megasphaera stantonii strain AJH120 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1368639 32 100.0 35 ................................ GTGCAAACGGCGTTGCCGGTGGCGATACCGTACAG 1368572 32 100.0 34 ................................ TTTACCGCATGTCTTATCATTGGTCTATATCTAT 1368506 32 100.0 34 ................................ CTTCAATCGCTGGGTGCCAGACGGCAAGAGCTGT 1368440 32 100.0 34 ................................ AGCATGATTTGGTTGGCAAATCCCCAGACACATA 1368374 32 100.0 35 ................................ GTTCATATCAACTTCCATGCCGCCGATCCGCTCGT 1368307 32 100.0 35 ................................ TTACCGCTGCGTCCCCGGCGTCGTTTCATTTCGAC 1368240 32 100.0 35 ................................ ATCCCACGAGTCCAACAAGCTATTGACATCGTTTT 1368173 32 100.0 34 ................................ ACAGACGGGGCTGTCCCGATATTGGTGGGGTGCC 1368107 32 100.0 36 ................................ AGATACCCGATGACACGAGTACCGTAGTCTACGTCG 1368039 32 100.0 35 ................................ TCCTCTGGCATGGTGGGTGGCTTAATGCGTATCAA 1367972 32 100.0 34 ................................ GCATCGTCGGGGCGGTATTTTTCAGCCGCGTCCT 1367906 32 100.0 35 ................................ TGCGCCATATGCATGCTCTCAAACGAGGCGCCGGC 1367839 32 87.5 35 ....C....T.C......G............. TTCATGAGGTCGTCGATGCAAAAATCGCTGCACCG 1367772 32 87.5 0 ....C.....AC......G............. | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 98.2 35 GTCATCCTCCGTGTGAGGATGTGGATTGAAAT # Left flank : TGAATCGCAAGGTAATCGGCTGTATATCCAGGTCGCCTACTTGTTGGCGTCAGAGGAAACGATTCAACGAGAATTTGGCGTTTATGAGCGAGTTCGGGACAATTACCCTAAGTACGTTCTTACGCTGGATGAGTTTGACATGAGCCGGGACGGCATCAAGCATCGAAATATTCGCGATTTCCTGCTGGAAAAAGAGTGGAGATAGACGTTGTCCGAGCTATCTGTTTACTGGATTAGATTTTCCCTTTTATGTTCCCTTAGGGATATGGTATCGGAAACAATTCTCGGAAAATCGCATAATTCAGTTAGTGAATGAGATTATATACTTTAATACATGGGTAAGTGCGAATTGCAAGTATCGGATATATCGTGGAGAGATTCGCACTCAAACAAGTAACATGTTGTCGAAATAGACAGCGATTTTCAGCAAATCAGCTGGATAAAGTTGCATCAAGTTCTATATATGCTGTATTTCGGAATAAGATATACCAAATGCAGCG # Right flank : CAGCTAACTGCAGTAGCAATATCCGTTTTTGACGTGTCGCCCTCCGTGCGAAGACTGTTCCTGTATTTTTTGTATGTACCATGACTGCGGCTTGTATATTTTATAATATGCCCTTATATACTTATTATGTATATAAGGGCATATATACTATTGGGTCAGGAAAATATTTCGGTTAATTGTAAAATGAATTTGAACAGGTAATCAAAAAACAAAAATCCATAGTGAAGCTTCATGTTAAAATGGTTTTGCGAGAAATCATCAACAAAGGAGCAATCACTATGGATCACATCCATTCTAACACAATTGAGGACGTACGTACACCCGGCCGCCATCTTTCTTTGGAGGAACGTGGCATGATTCAGGCCCTGCATCGCCAGGGGCTTTCCCTTCGCAACATCGCTGCTGCAGTAGGATGTGCTCATACGACTGTTTTCTATGAACTTCGGCGTGGAACGCCGGATCGGAAAAGCAAGCACGGTCGTGCCCCTCAGTATATGGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCTCCGTGTGAGGATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 4 1373971-1371684 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029462.1 Megasphaera stantonii strain AJH120 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1373970 32 100.0 34 ................................ TTACTTGATGTAACTGTTACGACTGACACCAATT 1373904 32 100.0 35 ................................ TTTTTCAAAGCCTGCTTCCATAGTACCATCTTGAA 1373837 32 100.0 34 ................................ TTTGTACCAGCAGTTCCACAGCATTTTGCCGGAA 1373771 32 100.0 34 ................................ ATGAAAAACATATAAATCAGTTATTCGGAACTAC 1373705 32 100.0 34 ................................ CAGCAGATAGGCGTCCGCTACGGAATCGGCAAAA 1373639 32 100.0 33 ................................ CCGTTGCAAAAAGTCGCCGCCTCGCAACGTCGG 1373574 32 100.0 34 ................................ AAATCCCGATACGGACAAAAAAGTATCGGCGCCG 1373508 32 100.0 34 ................................ ATATGGGGTAGGTGATATGTATGGAATCAGACTA 1373442 32 100.0 34 ................................ TTCACATTGTTACGGCTTATGATGAGCGTCGATG 1373376 32 100.0 34 ................................ TATTGACAGCTCTTGTTGTTGACCGTCCTACATC 1373310 32 100.0 34 ................................ TGCCATGATATATCAGCTCCTTTATATGCTGTAA 1373244 32 100.0 34 ................................ GTCAGCAACGCATCGGGCACGTTTTCAAATTGCG 1373178 32 100.0 36 ................................ GAGCAATCAATGAAACGAAGAATACCCGCAGCTGGT 1373110 32 100.0 34 ................................ GTCTAAGGCGCGACGGTTCAGGTCGTCAAACAAA 1373044 32 100.0 34 ................................ AGAAAGAGGTATTCGCATAATTCCTACAACAAAA 1372978 32 100.0 35 ................................ TTTTTGGATGAATTTGTTGGTATCGGTCATGAAGA 1372911 32 100.0 34 ................................ CTTTCAGCTCGGCTCGCAACAAATATTTAATAAC 1372845 32 100.0 34 ................................ CGCCGTACTCATTGGTATATGCTACGGACGCAAC 1372779 32 100.0 34 ................................ GTCCATATCGGTCTTAAATACGGTCGTGGCGTAC 1372713 32 100.0 35 ................................ TTTTTCCGGCTCCACGACTGGGGTATGCCCCGGAA 1372646 32 100.0 34 ................................ ATCGTGTCCAGCAAGGTCTTTGGTGTCTCGCTCC 1372580 32 96.9 35 .......................A........ TATAAGGTAAAGAACAGTGGGCGGGTGCCTCTAGC 1372513 32 87.5 35 .........CAC.C.................. AGATACACCGGACGAAATGCTTTCCTACATTTTTC 1372446 32 87.5 34 .........CAC.C.................. TTGCTAAACAAGAAAAGCTGAACTACTCAGCTCG 1372380 32 87.5 35 .........CAC.C.................. GTCAGCATTTCCACACATTCGGCCGGCGTCTTGTT 1372313 32 87.5 34 .........CAC.C.................. AATACGTTGGAGAACACGGTAGTGAAACCAGACA 1372247 32 87.5 35 .........CAC.C.................. GCAATGTGGTCGTACATGCCCGGAAATTCCATCGT 1372180 32 87.5 34 .........CAC.C.................. TGGTCATACTATACAAAGATACTCGTGGTGTGAG 1372114 32 87.5 35 .........CAC.C.................. GGCCGGGCCATGTTGGATAAAGACGATAATGGTAT 1372047 32 87.5 35 .........CAC.C.................. GGTAAGGTCGCATTAGATAAACGGTTGAATGGTGG 1371980 32 87.5 35 .........CAC.C.................. GCCGATTGTTGGGCATTACAGCTCGACAGAATGTA 1371913 32 87.5 34 .........CAC.C.................. TTCTCAGCTTTGGCTCGTTCGGCCGCTGTGCGGT 1371847 32 87.5 34 .........CAC.C.................. AAACGCACGGCCGGCGAGCTCATCGAGGAACTGA 1371781 32 87.5 34 .........CAC.C.................. CTCCTCTACAATTTCCATCGCTCTAAAATCATCG 1371715 32 81.2 0 .........C........AG.C.A.......A | ========== ====== ====== ====== ================================ ==================================== ================== 35 32 95.1 34 GTCACCCTCAGTGTGAGGGTGTGGATTGAAAT # Left flank : AACAGGAATTGAGGTGGCAGACGAAATGTATATTCTAGTTTCGTACGATATCAGTACGAATTCAGCGGCAGGAAAACGCCGCCTGCGGACGGCTGCTAAGATATGTTTAAACTATGGGCAGCGCGTTCAAAACTCTGTATTTGAATGCGAAGTAGACGAAGGACAATATTTGCAGCTGAAACACCAATTACATGAGGTGATTGACGAATCTGTCGATAATTTGCGTTTCTATCGCCTCGGGAAACACTATAAAAAGACCGTAGAATCCATCGGCGTCGACAAACGATATGACATAGAAGGCCCGTTGATTCTGTAGCGGCTTTCCGGCAATAGAAATAGGCTGTGCGAATCGTAAGCATCGGACATATACCAGGGAGATTCGCACTCAAACAAGTAATATGCTGTCAAAATAGACGGCGATTTTCAGCAAATCAGCTGGATAAAGTTGTATAGGATTCTAGATATGCTACGTTTCGGAGTAAGAGATGCCAAATGTAGCT # Right flank : CTTAATATTACATTTTTGGATAAAATTATGGTAATAAAAGAATCGTAATATCTGTTATATATTAAATAGAGGTTAATTGTAAAATGAATTTGAACAGGTAATCAAAAAAACAAAAATCCATAGTGAAGCTTCATGTTAAAATGGTTTTGCGAGAAATCATCAACAAAGGAGCAATCACTATGGATCACATCCATTCTAACACAATTGAGGACGTACGTACACCCGGCCGCCATCTTTCTTTGGAGGAACGTGGCATGATTCAGGCCCTGCATCGCCAGGGGCTTTCCCTTCGCAACATCGCTGCTGCAGTAGGATGTGCTCATACGACTGTTTTCTATGAACTTCGGCGTGGAACGCCGGATCGGAAAAGCAAGCACGGTCGTGCCCCTCAGTATATGGCAAAGCGCGGTCAGAAGGCTTATGCAGAGAATCGCAAGAACTCCAGGAAGCCTTGTAAAATCGATCATGACGACTGCGAGCTGTTTATCCAATGGATGGTG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCTCAGTGTGAGGGTGTGGATTGAAAT # Alternate repeat : GTCACCCTCCACGCGAGGGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 5 1384181-1382556 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029462.1 Megasphaera stantonii strain AJH120 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1384180 32 100.0 35 ................................ TGATAAAGTTTTACATTCTATGTTTAAGCGATATT 1384113 32 100.0 34 ................................ TGGTTTGCAGGCTGGCGCTGCTTTGTCAAATAGT 1384047 32 100.0 34 ................................ CATGCGGTCAGTGTATTGGTTGCCGACTGGAGAA 1383981 32 100.0 34 ................................ ATCTTTCCAGGATGGTAGTGCTTGGCGGATATAA 1383915 32 100.0 35 ................................ AACGTGTCTTTTAGCAACGCCCGCAGGCTGGCCGA 1383848 32 100.0 36 ................................ CGTGGTCTCAGCGGTATCGATAACATGAACTCCGAA 1383780 32 100.0 34 ................................ TTTCACCGGTATCTTTTCTACGCTTCCGTATTTA 1383714 32 100.0 34 ................................ TTCGTCGCTGCGGTATATGCCGCAGGGCTCGTGA 1383648 32 100.0 34 ................................ TTTTCCTGCTGTGGGTCCCAGTGCGGGTCGCGGG 1383582 32 100.0 35 ................................ GTATTTATCACCTCAATTCATAGTATTTCTTACAT 1383515 32 100.0 34 ................................ TATTAAGACTTGGCAGCCTATTGATTTCTTTACC 1383449 32 100.0 34 ................................ TCCCACATCTCCTTGGAGACGATGGCCGGCAGTA 1383383 32 100.0 35 ................................ GATGTACCGTTTCGGCTGGCCGTTGACGGTCCGCT 1383316 32 100.0 34 ................................ GGCTATGACTGGGACGAAAAGACGAGGTTCCCCG 1383250 32 100.0 34 ................................ CCAACGGCATGTCCGCTGAGCAGGCACTCGAACT 1383184 32 100.0 35 ................................ TTAATACCTACTACATCTTGACCTGTTAACAAACA 1383117 32 100.0 35 ................................ CACTCGTATTATAGTCTGTACCGCATACAGAATAC 1383050 32 100.0 34 ................................ CCTGTGGGCACGGCCGATAAGATCCGCAAAGTAT 1382984 32 100.0 34 ................................ ACGTCTTCATAGCCCTGTTCGTTCGCAAATTCAA 1382918 32 100.0 34 ................................ AATCCATTTACCCAAACCATCACGAGAGACTACA 1382852 32 100.0 34 ................................ TGCATATTGCGGGGTCATGACGATGCTGTAGTTT 1382786 32 96.9 35 .G.............................. TTTTGGTCGAGCAGCACCCGATACGGCTCCGTGTC 1382719 32 96.9 34 ..........A..................... GTTGACGAGAACAAGCCGCAACGCTTCTTTCTCG 1382653 32 100.0 34 ................................ TCCCACATCAGCAGCCCGATGACGACCAGCAGGG 1382587 32 93.8 0 .........CA..................... | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 99.5 34 GTCACCCTCTGCGTGAGGGTGTGGATTGAAAT # Left flank : CATTGTCGACGTCAAGGGCGCACTGGAGCAAGTTTCCTATCCGGAACAGGCTGAAGGGAGCCTTGTCATCCAAACAGAAGATCCCTTAGCCGACTGGAATACCGGTACGTTCCGCCTGACCGTTCGGCAGGGACGCGGCTCTGTAGAACGGACGGAGCAGGAGAAGCCGGACGCCGTCATGCCTGTCGGTACCCTAGCGCTGCTGGTCTTCGGCGCAATGGATCCAGCGGATCTGGCATTCAATGAAAAACTATCCGGCAGCGACAAAGCCTTGCAAACCTTAGGAACGTTTTTCCCGACAGAAAAATGCTACATTAACGAATGGTACTAGACGATGAACAGGTGCGAATGGAAAGCATCAGATAGATACCAGGGAGATTCGCACTCAAACAAGTAATATATTGTCAAAATAGACAGCGATTTTCAGCAAATCAGCTGGATTAAATTGTATCAGCTTCTATATATGCTATGTTTCGGATTAAGAGATACCAAATGTAGCT # Right flank : CATATGACAGCATTAGATGTATTGTCAGTTTTGTCAGTTCAAGGCTAGCAAAATATTATATATAATAAATCAAAATATTATATGTAGATATTTTTTATTAGGTATCTATCTTGAAGGTATGGTATAATCAATCATATAGAAGTGAAACGGAATATATAGGTATAGCTAATTATTTTTTAGGATTGGGACGCTATGGATATTGAATGGGATTTGCTGCTGGCGCATTGGGATGCAGAACTGAAGAAAGGGCAGTATATCAAAGACCATGTGAGGAATACGGCTGAGTATATGGCTCGTATAGGTAAGTCTCTTGGGCTGGAATCTATCTGTATTCTTATCGGCCTTCTTCATGACGCAGGAAAGGTGAATCGTGATTGGCAGAAATATATCCGCGGCGAAGCGGCGTCGGGCGGGGATCACGCTGGCGTCGGAGCTTGGTATGTCCAGCATGTGTTGTATAAATATGTAAATAATTCCGTACCTGCCGATACGTATCGATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCTCTGCGTGAGGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 6 2607933-2608562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029462.1 Megasphaera stantonii strain AJH120 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2607933 36 100.0 30 .................................... CATTACCTTTATTTCCCGCACGGAACAGTT 2607999 36 100.0 30 .................................... ATCACAACAAATTATAAGTTTGACACCGTC 2608065 36 100.0 30 .................................... ATGACACTATACGACATTTGCGCCGCCTGG 2608131 36 100.0 30 .................................... TATTCTTTGAGTCTACGGACGAGAATGTTA 2608197 36 100.0 30 .................................... CAGCAGATAATGCAAGTTTCTGCAAGCTAT 2608263 36 100.0 30 .................................... AGTTCACGTTCATGGGCGTTAGAAACGATT 2608329 36 100.0 30 .................................... CCTTCCCGTACCGGCAGAATTTCCTTGCGC 2608395 36 100.0 30 .................................... TAGGACGGGCTCTATCTTCGCAATGTCCTT 2608461 36 100.0 30 .................................... GAACGAACGTGAACGATTGAGCCAAATCCG 2608527 36 91.7 0 ..............................G.T..G | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.2 30 ATTATACCTTAGCGAGAGATATTAGGGAACTACAAC # Left flank : GCATTCTCTAACCGCTTGTGAGGCTTGCATGCCTTACGGCGGCGGGCATACTGTTGTTGTGCGGTGATGGGCAGATACTTGCCGTTCACTGTATTTCTGCGTAGTTCCCGTGAGATCGTGGATTTATCTCGGCCGAGGGCCGCCGCAATTCGAGAGATAGAATAGGACTGCGCGCGAAAAAAGAGTAGATTTTCTCGTTCAGATAGAGTAAGATGATGATAGTGGCACATAGGTTTCCTCCGAGATATAGATTTTGTTTGGTAGCATTATTATATCAGAAACCTATGTGTCATTTTTTATAGGTGTTGCACTTGTATTGTAAATTCGCCGGTGAAAAAATTCCCGATTTAGATGAAAATAAGAAGAAAAATACAGTCGTTGTTTTGTAATTTTTGTGAAAAAAGTGTCTCGAAAGAGGCACTTTTTCTGCTTTTCCGACGATTTTTTTCATACTAAAAAGAACGTCGCAGAAAGTGTGCAACGTGCTTTTTAGCAGGTAT # Right flank : GAGGACAGAACAGTTTGACACGTCGTCATTGATATATTACTGTTCACTATCATTGTACTGTAACATGGCATAATTGTGAATATGTAAAGTTTTATTATTTTCTCTGTCTGGGCGGTTCTTACCAAAATAGGATGATTTTATGCCGTTCATATGGTATAATACTATTTTGTAAATGTGTATTAAATTTTTCTGCGAGGAGTGTCTGTATGAAAATCAGTGCTGAAGAAATAAAGAAAATTGCACTGTTGTCCCGCTTGGAAATCAAGGAAGACCAGATTGACGCTGTCGGGAAACAGCTGAACGACATTTTATCGTATATGGATCTCATGAGTCAGGTAGATATTACGGATGTACAGCCGACGGCTCATGCCGTATCCATGTCCAATGTCATGCGCGACGATGTGCCCCATACGTCCCTGCCCAATGATAAAGCGCTGCAAAATGCGCCGGAACCGGAAAACGGCTACTTTAAAGTGCCGAAGGTCATTCAGGATTAAGGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCTTAGCGAGAGATATTAGGGAACTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //