Array 1 288979-291244 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWRE01000018.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CFSAN024718 CFSAN024718_contig0017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 288979 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 289040 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 289101 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 289162 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 289223 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 289284 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 289345 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 289406 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 289467 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 289528 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 289589 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 289650 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 289711 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 289772 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 289833 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 289894 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 289955 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 290016 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 290077 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 290138 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 290199 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 290260 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 290363 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 290424 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 290485 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 290546 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 290607 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 290668 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 290729 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 290790 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 290851 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 290912 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 290973 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 291034 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 291095 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 291156 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 291217 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 37 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 307790-310260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWRE01000018.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CFSAN024718 CFSAN024718_contig0017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 307790 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 307851 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 307912 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 307973 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 308034 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 308095 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 308156 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 308217 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 308278 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 308339 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 308400 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 308461 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 308522 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 308583 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 308644 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 308705 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 308766 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 308827 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 308888 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 308949 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 309010 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 309071 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 309132 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 309193 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 309254 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 309315 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 309376 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 309438 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 309499 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 309560 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 309621 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 309682 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 309743 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 309804 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 309865 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 309926 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 309987 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 310048 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 310109 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 310170 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 310231 29 100.0 0 ............................. | A [310258] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //