Array 1 209965-214621 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYSG01000001.1 Bifidobacterium choloepi strain BRDM 6 sequence1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 209965 36 100.0 30 .................................... GTCGGTGCAGAAAATCAGCTCGTCGCTGGA 210031 36 100.0 30 .................................... TATGCCCCTATGTTACCAGTTGCGGCTGTA 210097 36 100.0 30 .................................... CCCCGTCCGCTGGACGGTGACGAACGGGTA 210163 36 100.0 30 .................................... ACGCGGTTTCGCCCCAGTTGAACTTGATCA 210229 36 100.0 30 .................................... GCTGCCCAACAGTTTTCGACCACAACCACA 210295 36 100.0 30 .................................... GCTCGTCTACAGGTTGTAGAAGGAGTCTCC 210361 36 100.0 30 .................................... TACAAGGCCGTCCGCAAGGAATTCGGGCCG 210427 36 100.0 30 .................................... GACGATCTCGAGACCGTCACCACGCGAATA 210493 36 100.0 30 .................................... GCAGCGCAGCGAGTACGTGCGCGACGAGCA 210559 36 100.0 30 .................................... CTGCTTGAACCGCGCAAACTCGCCGGTCTT 210625 36 100.0 30 .................................... GATCTGGTAGCGTGGCCGTCCGTCGGCCGC 210691 36 100.0 30 .................................... TCCTTCTGCGTGATCCCCTTCTGCTCTATG 210757 36 100.0 30 .................................... AAAAGCAGGCCGAACAGCTCGCCAAGACGA 210823 36 100.0 30 .................................... ACTGTTCGGTGTCGAACGTGTCGAGGGCGG 210889 36 100.0 30 .................................... TTCTTCTGGTCACGTCGAACACTGGCGGAG 210955 36 100.0 30 .................................... TGCAGAAGGCTGCCGCCAGCCTGTATCCGA 211021 36 100.0 30 .................................... TTCATCGAGCGTCAGATAGCGGCGTCGCAC 211087 36 100.0 30 .................................... AGCACCGCCGTCGCCGTATTCAGCGCCCAC 211153 36 100.0 30 .................................... CGGTGAGGGTGTCGAGGACCTGGATGCCGT 211219 36 100.0 31 .................................... ATGTCGGCGAGGATGCCGGCGTGGATGTGCG 211286 36 100.0 30 .................................... GAATCCGGCGAACGAGAAAACATCAATGTC 211352 36 100.0 30 .................................... CAGGTCGACGGTTTTGCGGCCGAGCTGCCG 211418 36 100.0 30 .................................... GAGCCAATGGAGAAGACAGCATCGCCCGTC 211484 36 100.0 30 .................................... CGCGGCGGTAGCCGTTGGCGCGGCGCGGAT 211550 36 100.0 30 .................................... TTCTTCGGGCTGGTGCGGAACGTCTGGAAC 211616 36 100.0 30 .................................... GAGCCGGCCGGTCCATAGGCTAGGGCCATG 211682 36 100.0 30 .................................... GCGGCTGCTGGGCTGATTTGTGCGAGTGGC 211748 36 100.0 30 .................................... TTCCGCCTGGTGCATCGCCTCCGCGCTCTG 211814 36 100.0 30 .................................... ATCAGCTGGGCGTTGACGTACACGTCGGTG 211880 36 100.0 30 .................................... GAATATGCTGCGACGTTGTACAGGACGATT 211946 36 100.0 30 .................................... TGTTCTTTGTTTTCTTCCTAATGGTGACCA 212012 36 100.0 30 .................................... CGACAACTAGCCGCCGCCATCACCCCTTCT 212078 36 100.0 30 .................................... TGTAGGCCGCGCCGAGCCCGTTCACGTTGC 212144 36 100.0 30 .................................... ACTGTAAGTTGAGGCTGGGCTTCAATCCAT 212210 36 100.0 30 .................................... GCGGGCGTTTGCCAAATCATCGTGACCGGG 212276 36 100.0 30 .................................... TCGGAGAGACAGATCGCGAACGGGCAAGGA 212342 36 100.0 30 .................................... AGTGAGTTGTGGAAGGCATTGGTGAAGTAA 212408 36 100.0 30 .................................... CCGAATCCGTCATGATGCCGAACTGCGAGA 212474 36 100.0 30 .................................... AGTCGGCGAGCGAGTCTGGACGGACCGGCT 212540 36 100.0 30 .................................... ATGGACCTCGCGCACCGCATTCGCCCCGTA 212606 36 100.0 30 .................................... AGCTGATGGAGACGATGGGCCCGTCGGAAG 212672 36 100.0 30 .................................... GTACGGGTTCGCGCTCAACCCGGTTGGTTA 212738 36 100.0 30 .................................... CCTGCCAGCTCATCGCGCACCCCCGTCAAC 212804 36 100.0 30 .................................... GGTACCGTAAGGCGTAGTGCAAGGCGGAAT 212870 36 100.0 30 .................................... CGAACGTCGCCTCGTCGGGTTCGGGTTCGT 212936 36 100.0 30 .................................... GGCGACCTGTACCTGTGCAATTTCTGGACG 213002 36 100.0 30 .................................... CCCGCGCCACAACAACAAGGTCGAAAACAG 213068 36 100.0 30 .................................... GGGACCGTCGAACTGTCGATTGGCAATGTC 213134 36 97.2 30 ............C....................... TGACGCCGAAATTTTAAAAGGGCGTCCCCC 213200 36 100.0 30 .................................... GCAAGCCCGAAATACTTGATGAAATTCGAC 213266 36 100.0 30 .................................... AGCCACAAGATCTTGCACAGCGAGAAGGTG 213332 36 100.0 30 .................................... ACAACATCGGGCGGGACGATGGCCGACAGT 213398 36 100.0 30 .................................... TGATAGGACGTCTGGGCGTTGGACGCGTAC 213464 36 100.0 30 .................................... CGCCGGCCAAGAGTCCCAGCCAGAGGAATA 213530 36 100.0 30 .................................... ATTTCCGCCTGTTCAGGCGTGAGCTTCTGT 213596 36 100.0 30 .................................... AATGATTGGCGTCGTTCTTTAAAGTTTTCA 213662 36 100.0 30 .................................... CCGTCCAGTCGCGCACCTACACGGTCGTGT 213728 36 100.0 30 .................................... CCGACGACCGCAACGTGAACCTGACCCGCC 213794 36 100.0 30 .................................... CGTCGTGTTGCCCCATGCGGCGTTCTGGTA 213860 36 100.0 30 .................................... ATCGCCTCAAAAGCGATTTCCACTGGAGTA 213926 36 100.0 30 .................................... AGTTCATTGCCAACAAGGGCACGGCAGTCG 213992 36 100.0 30 .................................... TCACCGACGACGACATCACCAAGATCGCCA 214058 36 100.0 30 .................................... GAGGAACGAGTCGATCGCGAGCTTCCAGTG 214124 36 97.2 30 ............................G....... ATGCATAACCGCCAGCCCCCAGCCAGTGGA 214190 36 100.0 30 .................................... TCACATCGGATGGCGAACGTGCCGGATACA 214256 36 100.0 30 .................................... GATTCATGCGGCCGCTCCCACGTACTTGCG 214322 36 100.0 30 .................................... TCGCTCATGGCCATTTCGCACAGCATTTGC 214388 36 100.0 30 .................................... CCGCCGCGGCCGGCACCGACATGGAGTCGA 214454 36 100.0 30 .................................... CACGCCGACAAGGGTACCGGCGAATACTGG 214520 36 100.0 30 .................................... TATCGGACTCCCGATACGGATCCGCTTTTT 214586 36 97.2 0 ........................C........... | ========== ====== ====== ====== ==================================== =============================== ================== 71 36 99.9 30 GTTTCAGATCCTTAGCAGACCAGCTATCTAGGAAAC # Left flank : ACGCAGCCACTCCCCCTGATCTCAACAGTCTCCTGCTGAAAGATGTCCTCGCAAAGCTCACAGAGTCGTTTGCCGACATCGAGTTAATGGAAATCCATGACCTCTATGCTAATTTGCATAATCAAATTCAGCAAAAAGTATGGATGGAAGACCTTCCACTGACGCTCGCATCAACGTTCGACGTCAAAAAGATAATATCGCTATACAAGCCGTCTATCATGCTGGAAGAGCCAGCATCGATTTTTGAGGAGATCCGGGATATTGTAGAGCTTATGGGGGCTCTGCATGAACAGCGGACGCTCGTGATGCTTCATATAACTCAATATTGTCAGATAGCACAAATAAAATCGCTACATCAGTATCTTCTTGACCAAGAGATACAACTCCTAGATATCGAGTGCACTGACCAGCACTCTGGTTTGGAAGGAATACGAGACCATTATGTCGATAGAGATTATGTTCAGTTCACGTGAACCGTTCAGGAATCTCTAAGGCTATCG # Right flank : CTCTTGGTTTTGCGTCACGTGCGTGTTCGCTGTTTCAGATCCTTAGCAGATGTATTTAGTCTAATTAAATAGGTCGGTGTTGCCGTCAAAAACGGATGGTGTTGGCGTTCCTTTTTGGATGATTTTGCCGGGTCGCGTGAGGCGATACCGAGCCGGCAGCCACTCCTAGGTTTCAGCGGTGAAAGCAGTTCCTCCACGAGAATATCGCGACGAAGGAGCCGGCATCATACCCGAACCGGTATCAATACAACAACGTATCAGGATCCTTGACGCGCGGCATCCCGCTCGCCAGGATCGCAGAGGAAATGCAATTGAACGTCAAGACCGTGGCGGATACGCCCACACTCAGGACTGTTCCGAAACACCGCCGGTCGGCCGCTAGGTGCGTGGCAAGTTCGAGCTCGTCGTCGGCATCATCGACCGACAGCTTACCGAGGACCGCTATATACCCCGCAAGCAACGCCATGCCACCAACAAGAGGATTCGGGACGCTGGTGCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATCCTTAGCAGACCAGCTATCTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //