Array 1 1284692-1284861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009288.1 Paenibacillus durus strain DSM 1735 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 1284692 32 100.0 34 ................................ GAGTCCAACGCCGACACCATCGCCGAGTCCAACA 1284758 32 96.9 40 ..........................G..... AACGCCGACACCGAGTCCAACGCCGACGCCGAGTCCAACG 1284830 32 93.8 0 ..A.....A....................... | ========== ====== ====== ====== ================================ ======================================== ================== 3 32 96.9 38 CCGACACCGTCGCCTAGCCCGACGCCAACGCC # Left flank : GCAATTGGTTCTGGTGGGGCAAGAAGAACAATTTTGCCGCTCTGTGGAATATTATGTATGACCGCTTTGTTAATGTTCATAAGCTTAACAATCTGCTGTGGGTATGGAGCCCGAACGCGCCGAACAGCTGGGCCGATCCTTACGTCAAGACGTATCCCGGTGCGGATAAGGTGGACATTTTGGCGGCGGACATTTATAACAATGATTTCAATCAGTACTATTATGACAGTCTGCTGACTCTGGCCGCCGGCAAGCCGATTGCCATTGGCGAGAACGGACAAATGCCCGATCCGGCGATGCTGCCCAAATCACAGAGCAAATGGGTCTTTATGATGAACTGGGGCAAAATGCTGTACGAAAACAACAGCACGACTACAATCAAGAGCTTTATGAATAACGGATTCACCTTAACCCGCGATGAGGTTATAACGGGAATGGCTTCCGTAACGGTGCCGAGCCCAATTCTGATACAAGCGCCGTTACCAAGTCTGGCGCCAAGT # Right flank : CGACTTATCAGCCGATAGGAGAAGGTTCGGGGGTGAATGATCCGAACAGCGCGAATCTGCTGCCACTACCTTCGGCCACGCCGGAGCCTTCGCAGCCCCGCAACGGGCTGATTGGCGAATATTTTGCCAATATGCAGCTTTCCGGAACGCCTGCACTGGTAAGAGAAGAATCGGCCATCGATTTTAACTGGGGAACCGGAACACCGGACAGCTCTGTCCACCCTGACTATTTTTCCGTCCGTTGGAGCGGTAAAATCAAGCCTCTCTACACCGAGAACTATTCCTTCTATACTAGTTCGGACGATGGCATTCGGTTATGGGTCAACGGGGTAGCGGTCATTACCAGTTGGTCCACTCAATACGGAGTAGAGCGGAAGGGAAGAATCGACCTGGAAGCCGGCAAACTGTATGACATTAAAGTAGAATATTACGACAATACGGGGAGCGCCAAAGCCCGTCTGATGTGGGAAAGCCCTAGCCAAATTAAGGAAACTGTTCCC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGACACCGTCGCCTAGCCCGACGCCAACGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1470731-1472316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009288.1 Paenibacillus durus strain DSM 1735 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1470731 32 100.0 37 ................................ TTTGTCTGCTTGGCGAGTTTTGTCTGTACCCGCTGCT 1470800 32 100.0 38 ................................ CGACGGACACGCTGTCAATCTTAACGTCAGCACTGCCG 1470870 32 100.0 35 ................................ CGTATCTTCCGGGAATGGAAAAAGAATTCGGAAAT 1470937 32 100.0 36 ................................ TTCATTTGCACCTGGACAAGTTTATTAGCCAAGACG 1471005 32 100.0 33 ................................ AGACAAATAATAATCAATGTCTGCACGAAGCTG 1471070 32 100.0 35 ................................ GCCGGATAACCTCGTGCAATTCCACGTCCAGCGCT 1471137 32 100.0 35 ................................ AGGCGTTAGAGTTTATTCGTAATCAGGGTGTGCCT 1471204 32 100.0 36 ................................ GTCTTGGTCTTCATCATCCGATGATTTGGGTGGGAG 1471272 32 100.0 36 ................................ GCCGCATCCTCAGGGCTGATCCAGCCCCATTGCTCC 1471340 32 100.0 37 ................................ TACCAGGACGTTACCATCCTCGTCCAGAGCGACAAAT 1471409 32 100.0 36 ................................ TCTGATTCTGAACTATACCACCGTTCAGCGTGCAGC 1471477 32 100.0 34 ................................ TTCGGTCCGGCATCGTCCCTGACTGCTCAGACCC 1471543 32 96.9 34 .......C........................ CTCAAAACAATGGGCGCCCCGGTATGGGCCCGAA 1471609 32 100.0 36 ................................ GACGATAAACTGCTGCCCAAGCCAATCATGCGGCAC 1471677 32 100.0 35 ................................ GTCTACGACGACTACGCCTACCAGCTGCGCCAGGG 1471744 32 96.9 35 .......C........................ TATGTCTGTCATTACATCGTTCGAGAGCGCGTAGA 1471811 32 93.8 36 .......C...C.................... TGGGAAACCCTGATTTGCTCTTACTGCTTTGTAGCT 1471879 32 93.8 37 ......TC........................ CGGACAGTAAAAAACGACGCCCGGGAAGGGCGCCGCT 1471948 32 96.9 36 .......C........................ TCCAATACCAAGATTGCGATTACCATTAAATAAATC 1472016 32 93.8 34 .......C..A..................... TCGCGGGTAAATCCGGGAAGCAGCATATGCAGCA 1472082 32 93.8 34 ..........A....A................ GATTGCATCGGAGCCTACTCCACAATATATGGCT 1472148 32 93.8 36 ..........A....A................ TGTCAAAGCACGGTTAATGTATGCACTCAGGTCAAG 1472216 32 87.5 36 ..........A..G.A.............C.. CGTCCGAACTGGCTGACATCGTCATCCGCGTTATGG 1472284 32 84.4 0 .......C.AT.AA.................. | T [1472293] ========== ====== ====== ====== ================================ ====================================== ================== 24 32 97.2 36 GTCGCTCTCCGTGCGGGAGCGTGGATTGAAAT # Left flank : TATGAACGGGCAATTGCTGCCCCGGTCCAAAGTTCAAGACAAAAACCGTATGCTTGTCTTCTTTAAATACAACGCGCTTTGTGAATCGGTCCGTCTGGTATTCCTGAAATTGAATAAGTTCTTTCTTCTCCATTTGAAGTCACTCTCCTTGCTTCGGATTAATCAGGCCCTACAGCCGGATTTCGTATTCGCAGAACTAATTAGATTGTATAAGAATCGGACAGATGGCTAGTGATTTCAATCACATTATTTTCAATCGAACCGTGAAGGCTTGTCTTGTTGCTGCTTTTTCTTGTTCAGGATCATCCGTTCCAAGTGGCTGAGCCTTCTCAGGTGCGAACCCCAAGCGCACATAAAAACCCCGGGAGATTCGCACCTCTTGCGGGGCAAGGGTTTTCGCGTTATTTTATAAATAGGCGGCCCCTTTTTAAGCGTTCATTTAAGGGGTTCGCACTAAAGCGTTTGCAATCCCTTGCGCAGCAAGGGGTTACAGCGGTGCA # Right flank : TGCCTCGGAAATAAGATTGCCTCACATCGATATGTTGTCGCTCCCAGTGCAGGAGCCAAAGTTTACGCCACTTAAAAACCACATCCTACCATTGAAATTTGACTTCAAACTAACCAGTCACAAAGCAGGTTGTGCATTTAAAGCTCAACAACGAAAAAGCACCGAAAGCTCCGCTTTTACATCAGAGTTTCGGTGCTTTTTATTAGCCTAAGGGAGAGCTTACTCTTTTCGGCGAACCTCAAACAATTCATTGGGGCTGATGTCGAAGTATAAACATAACTTCATAATCAGCACTGCAGAGATTTTTTTCTTCTCCATGTTGCTGTTATGCATCAATTCCATAATCGTAGTTCTGCGGTGACCAATCTCTTTTGATAATTTCAAAACAGACATATTACCGTGTTCTTTTAAAATCTCGTCCAATTTGCAATGGAGTGTATATTTCTTATATTCCATTTCGTCCTCCGAATCAAAGTGTTGCACTTCAGGCGTGCATGTGG # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1473790-1475965 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009288.1 Paenibacillus durus strain DSM 1735 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1473790 32 100.0 34 ................................ CGGAAGGTGAGAACGTGGCTCAGATTATTCGCGA 1473856 32 100.0 34 ................................ CAAGACGGTCCGATTATACTAATGCCGAAAATTA 1473922 32 100.0 37 ................................ CGACATCACCACGACGACGGTTACCGGCTGCTAGCAA 1473991 32 100.0 34 ................................ CTCAAATAATAAAGCATATGAGTTAAATATTTAC 1474057 32 100.0 34 ................................ TGCGATCAGGTGGCCTGCCTAGCATCTTATATTC 1474123 32 100.0 34 ................................ TGGCGGCACGCCGGGTTGCCATTTGACATATCGC 1474189 32 100.0 36 ................................ ATCACACCAGCAATAACTCCTACAGGCGCACCTGTT 1474257 32 100.0 36 ................................ GGTTCCCGGAACAGCATGGACTGCAAATGCATGTCC 1474325 32 100.0 35 ................................ GCCACCTGTAGAGCGGCATCAAGATTAGCCTGTTT 1474392 32 100.0 35 ................................ ATGATGAAGTGATTATTGATGAGCCTGAAGATCAG 1474459 32 100.0 35 ................................ ACTCAAAAACCGGGAAGCCCTTATCTACGGCTAAA 1474526 32 100.0 35 ................................ ATATTTATATGACTCGGGGTTTCTATCCTATAAAG 1474593 32 100.0 37 ................................ CAAGCGTAGACATACAGTTTCTATCACTCCCGTTAAC 1474662 32 100.0 36 ................................ ATTGCTTTTTGCGGGCTGCTTGCCACACATATCCAG 1474730 32 100.0 36 ................................ CTGTCATGCAATAAGTGAATCGGCTTGTTGCAAATA 1474798 32 100.0 37 ................................ TTGCAAAGAAAGCAAGTCGATATTCACGGGCTCGATG 1474867 32 100.0 34 ................................ ACCGGTAATCACGCCCCAGTGTCGGCGCATTGGG 1474933 32 100.0 34 ................................ TCACAGAAACCACCAAAGAGTGGCTGGGCGTTAC 1474999 32 100.0 36 ................................ AGCCGAGCGGTAGGGAGGACAGGGATGATATGCTCG 1475067 32 100.0 36 ................................ CGATCAATGTAGGCCCGGTATCCTTGGTAGCTGATA 1475135 32 100.0 35 ................................ AATGCCCAGCTGGCGAGCAGCGGAGACTCTGCCCG 1475202 32 100.0 33 ................................ TTAGATTGAGTAGTCCGAGTTGTCGAGCTTGAG 1475267 32 100.0 34 ................................ GTGACACCAAGCGTGGGCCGCCTGGACAGTCGAG 1475333 32 100.0 34 ................................ GCCCTGCTCCGGCTCCTCCCCAAATACCGCAGCA 1475399 32 100.0 36 ................................ GTGATGCGTATATTTGCACTACTCGGGGACGGTGAT 1475467 32 96.9 36 ....................A........... GACCAGTTTCTGGAGGTTGCGCAGCAGCCATCGAGT 1475535 32 100.0 34 ................................ GAGGATAATAAGGTCAGCGTGTGGGATGATAAGG 1475601 32 100.0 35 ................................ TCCACGACGAGAGCAGTACTATCGCCTTCGACATT 1475668 32 100.0 34 ................................ TTTGAACAGGGTAGGGATTGAACTATCACTAACA 1475734 32 100.0 34 ................................ AGTATTGGAAAAATCGGTACTGAAGGCTCCGATT 1475800 32 96.9 36 ..........T..................... AAAAGGTGTAGGCACTGTAGGCATATTCGGCTTCAT 1475868 32 100.0 34 ................................ GAGTGCGTAAGGACTTCCAAGTAAATCCAATCTC 1475934 32 87.5 0 .......C....A.......C........T.. | ========== ====== ====== ====== ================================ ===================================== ================== 33 32 99.4 35 GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Left flank : AAATTGTTAATGTTAATCATTTCAGTGTCTTTAAGCTCTTATATGAATTGAAAAATGAATACCTTTTACATGAACCAATACCACAGTCATCTTTTGAATCAATGTACAGTGCGAATCCGATTGAGGCACTTTCTCATTTTTATCTCGAAAATGTGGATACTCTCGACTATTGGGAATGGAAACATGCTGGCGGGACCGCTGAACTAGCGATTTATTATAGGAAAACCAATCCAGACCTCAGCCTGATTGAAGCCATAGAAAAAGCGGAAAGGTCCCGGGCAAAACAGTAACCTAAACATACTGTCGCCCTGGGTCTGTATTCTAATGTTTAGTGCGAACCCCAAGCTCACATAAAAACCCCGGGAGATTCGCACCTCTTGCGGGACAAGGGTTTTCGCGTTATTTTATAGTAGGAGCCCCCTTTTAAACGGTCATTTTTAAGAGGTTCGCACTAAAGCGTTTGCAATCCCTTGTGTAGCAAGGGGGCATGACGGGGGCGA # Right flank : TTTTGCATTGGGCACTGATTCAACGATAGGCAACAAGTCGCTCCCTATGTGGGAGCATTATTTTTGCTCGGCTAATCTATCAAAACGTCGCATCCTTTTTTTTACAAAGAACATTATTCATAGGCCGGCGAGTATGAAAATAACTGGAAATCGAAGTTCCGAAGCGATAAGATAGAAGTGCTGGAATTGTATATCAAATTGGAAAATCATTGAATTGGGGGCGTCTAACGATGAAAATTGCGGTTGCGGGCGATCATGCGGGTTTTTCCTTAAAAGAAGAAGTAAAGGCTTTACTAACCAGCCAAGGGCATGAGGTAGTGGATTTCGGAACGCATAGTGAGGAAGCTTGCGATTTGCCCGATTATATTTATCCTGCGGCTTTGGCAGTGGCGGAAGGGAAGGTGGACCGCGGGATTTTTATTGATGGTGTAGGCTATGGAAGCGCTATGATTGCTAATAAAATCTATGGGGTGTACGCGGCGGTTTGTCAGGACCCGTTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCATGCGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 4 1477465-1477826 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009288.1 Paenibacillus durus strain DSM 1735 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1477465 32 100.0 34 ................................ ATGTTCGTATTCCCTCCAAGCAAAATTCATTTCC 1477531 32 100.0 34 ................................ TTGCATAGCTTGGATAGCAGCGTAAGGACGCTAG 1477597 32 100.0 34 ................................ CTTGAAAATATCCAAATTAACAGACATTGGTATG 1477663 32 100.0 34 ................................ ACTCATGTCCAGCTGATCGACTCCACCGCAGCCT 1477729 32 100.0 34 ................................ ATCGATATACTCGGCATTCCGCCAAACTTGGGCG 1477795 32 68.8 0 ...C.....TA.A.....AT...A.AG..G.. | ========== ====== ====== ====== ================================ ================================== ================== 6 32 94.8 34 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Left flank : ACAGCATTGCTCGTCCTCCTGCGATAATGTCTGCAAAATCTCCCGTCTTTCCTCATTAAGCATGGCATATTCTTTTAGCGACCGCATAAAAAGCTGTTGCCGTATAAGCGGCTCGGCGTCATGCAGCAGTCTCCCGGTTCCGATAATTTGAGCGCGAAAGACAGGACTGCTGATAATATTTATTTTGAAAAAAATGGAGCTAATAATCCACCTCAAGTATTCCGCTTTCTAAGGATAAGCTGGATAGGCTAGAAGCCAAGGGGGGAGAGCACAAAGACAATAAACAGGCTTTTCTTGTCAGCTCTTCTCGATTGTATCTCGCTAATCAAAAAGTGCGAACCTGAAGCGCACATGAAAACCCTGGGAGGTTCGCACCCCTTGCGGGACAAGGGTTTTTGCGATATTTTGTAGTTGAAGGGTCATGAAGTGGACTGTTTTTACAGAGGTTCGCACTTTTTGGGCTTCAAACCCGTGCGGCGCAAGGGTTCTGAGGCATACCT # Right flank : TTCACAGAATGGATAAACTAACTCTAACTGAAGCGCAACTAAGGGAAATTGTCGACAGCTACGATATGCAGCATGAGGGGATCGATACTTTTTTTAATCTGGAGAGCAAGGAGGTTGTCTTCATCAATAATGAATTTTCTGATCCGGAGGACGAGGAATTGGAAGAGGAGATTGATGAGGGGTTCGGCGAAATCTGGTTCCGATTACCAGAACGGTTTTCCAGCGACGGGTACCGGGATATGGAGGATTTTGTAGATATTGTATCGGACGAACGACTGAGAGAGCGGTTGATAACGTCCCTTAGAGGGGGACGCGGGGTTTTTCGCCGCTTTAAAGATACGCTTGGCAGCAACCCTGAGGAACTTGAACGCTACTATCAGTTTGTGGATGAACGCAACCGCGAACGGGTACTAAAGTGGATGGAAGCAGAGTTTGATATGGAGATAGAGATAATAGGCGGGGAAGAGTAAGAGCGTTTATGAACGATCCAGGCTATTGCG # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 1485976-1488814 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009288.1 Paenibacillus durus strain DSM 1735 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 1485976 31 100.0 37 ............................... TTTATGACCGTCCGCATATGTGACCAAGAAATCCGCG 1486044 31 100.0 36 ............................... CGCGACCATACGAAGAAAGCGCCGGACTACGATAAG 1486111 31 100.0 36 ............................... GGCATCATCGTGCCGAAAATCATGATCGAACTCGCG 1486178 31 100.0 36 ............................... CTTGAGCTAATCTATCAAGGATTGATTGTAGAAAGG 1486245 31 100.0 35 ............................... ATACCGACTTGGAGGTATTTGATTTTATCCACAGG 1486311 31 100.0 37 ............................... CAGCACTCCGGCTGTTTCTCGCTGCGTATCGTATGTG 1486379 31 100.0 34 ............................... AGCAGGCATGCCGCTAACAAATCCAACAGCAGCG 1486444 31 100.0 37 ............................... ATGCGATTCCAAAGTATCAAACTATAAACTAAAGCAG 1486512 31 100.0 35 ............................... TCCGGGAGCAAGCAAATTATAAGAAGATCGAGCGG 1486578 31 100.0 35 ............................... CGCTATGTACGAGACAATGACTATGTAACTGGTCG 1486644 31 100.0 37 ............................... TAATGTAGTAATCATCAGATATATCTTTGAGCATGTG 1486712 31 100.0 37 ............................... GGAATTTGGCTCCGACCTTGTAGGGCTTGCCTCCCTG 1486780 31 100.0 35 ............................... CCTATCAATCCAAGACCAAATACCTCCCTCTTCCG 1486846 31 100.0 36 ............................... ACTGATAATCTGGAGGGGCCTAAAATATGACTGTTG 1486913 31 100.0 34 ............................... GTAATATAGAGAAGCATCTGGATCTTTTGAATAG 1486978 31 100.0 36 ............................... TTCAATAGCCGCAGCCAATTCCTCCGACAGATAAGG 1487045 31 100.0 36 ............................... ATATCTGCATACTGTCGTGCATTTGGATTGTCAGGG 1487112 31 100.0 38 ............................... ATGAGCGAAACCGAGGACACCAACAATCTGGCCGTACG 1487181 31 100.0 35 ............................... TTGCCCTTGGTACTGGTATACGTCCTTGTCAGCGG 1487247 31 100.0 36 ............................... AAATTTTCAGGCTTATATCTCTTACGAAATTTAGAG 1487314 31 100.0 37 ............................... TATCCGTTCTGGTGTCATATCCTATATCTCCTTTGGG 1487382 31 100.0 35 ............................... CATGTTGCGGGAATACCCTCCACCCCATAGTAGGG 1487448 31 100.0 34 ............................... CGGATGTTGGCCAGGCGGGAATCGGCTTGTGCGG 1487513 31 100.0 35 ............................... CTAAAAAAGAAGAGGTGAAAATAGTATGAAGGAAG 1487579 31 100.0 35 ............................... ACTAAAGTAGCCGCAGCTACGGCTTCGTCAAACTG 1487645 31 100.0 36 ............................... CTCGCAGTCATTGTCCATGATTTACGTAGACGTAAG 1487712 31 100.0 36 ............................... CGTCTGGCATAGGTGTCTATTACGACCCGGACCTTG 1487779 31 100.0 37 ............................... CTCAGTAATCCAACAGAAGAGTCGGTACTAATGACCG 1487847 31 100.0 37 ............................... CGCCATCTCTCAGGATTCAATCCCTGCCTCATTATCG 1487915 31 100.0 34 ............................... ATTGTGGCGATCAGAAAAATAAAGGAGCGCTGCG 1487980 31 100.0 35 ............................... CGGTGTACTTGCTGGCGACTAGGTATATCCCAATG 1488046 31 100.0 39 ............................... CTCGATATTCGTAACGTAACGGGAATTTGGTGTATTTGG 1488116 31 100.0 34 ............................... AGGCAGAGCGGCGTACCTCTGGATGTGTGGTCGG 1488181 31 100.0 37 ............................... AACGGCAAGAGTCCGGTCGCGGAAAAGTCGTCATGGG 1488249 31 100.0 35 ............................... GGTGACATCAACGAATACTTAGCCGTTTAACGTAG 1488315 31 100.0 35 ............................... GACACCGAAACCGTCGAAATCCAAACCCTGAAGGG 1488381 31 100.0 36 ............................... GATGAGTTGTGTTCGGTGTAATGGCGCTGGAATGCG 1488448 31 100.0 37 ............................... AAGCATAGCCTGTGCAATCGTGATCGAAGCACGAACG 1488516 31 100.0 35 ............................... CTAGAACCCTACCTGTCATGAAAGAAAAGAAATGG 1488582 31 100.0 36 ............................... GTGCCGCGCACATAAACGTGTGATTTCGGATAAACG 1488649 31 100.0 37 ............................... GTCAACCGACTGCTTAACGGTCGGCTGCGTGATCCCG 1488717 31 100.0 36 ............................... CATCATGGACAGATATAATTTGCTTGAAAAGCTCGG 1488784 31 90.3 0 ..........................A.T.C | ========== ====== ====== ====== =============================== ======================================= ================== 43 31 99.8 36 TCGCTCCCCATGCGGGAGCGTGGATTGAAAT # Left flank : AAAAAGCGAAGGCCGACGCTCCGAATAATACCGACGCTGCCAAAATCCCGCATGCTATGGTCATTTTTTTGGCATTGTGCCTGAATGTGTGTCTGTTCATCATTATTCACCTCTTATCTTCATAGATGCCCAATACGGCGAAAAGGTTGCAGGGAGATGAAAAATTGTCCGGTTGAGTTCGCATTCCAAGCGCATATGAAACCTTCATAAATCTGGAGATTTTTCTGTTCCATATTGGTATTATGCATCAATTCCATAATGGTTGTTCAACGGTGACCTATCTCTTTAGACCATTTCAAAACGGACATATTACCGTGTATTCTAATGTTTGGTGCGAACCCCAAGCTCCCATAAAAACCCCGGGAGATTCGCACCTCTTGCGGGACAAGGGTTTTCGCGTTATTTTATAGAAGGAGCCCCGTTTTAAACGGTGATTTTCAAGGGATTCGCACTAAAACGTTTGCAATCCCTTGCGCAGCAAGGGGGCGCAGCGGGTGCAG # Right flank : CTATCCCTCCTTGGGGCTTTATAGCTTTTTTTAAAAATTTATTAATTCTATTTTCATATAAGGGGTTCAAATCGACCTTAACAACCGAAAGCAGTGGTATTGTCATACTACTTATTTCGATCAGTACGATTCCCTACGTTGACAAATAAGATTTTCTACTAAATGCTTTACTCCAGTGCCTACTGGAGTATTTTTTTTGTTGGATTTTTACATAAAAAGAGGAATTAGAACTAGTTCTGGAGAAGTATATCTGTGAATTGTAGGGTTATATTGGATATTTTGTTGAAACAAGGAGGGACTATGGAATATATTGCCCATATCCGCCAAAAGGATAAAAAAATTCAGACGGTGGGGGAGCATCAGAAGGAAGTGCAAGTCGGCTGCGAGCACTATGGCGCGAAGATAGGGGTGTCCCATCTGGCCGGGTTAGCGGGAATGCTGCATGATATTGGAAAAAATACGAACGAGTTCAACATGTATCTTGTGAATGCAGTCTATCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 1498021-1500116 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009288.1 Paenibacillus durus strain DSM 1735 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1498021 33 97.0 33 ................................T TCTATCTTCCCTCCCTATCGCCCTCCACTATTT 1498087 33 100.0 35 ................................. TACACGTCTGAACGCTTAGGCAGTGTAGGCATCAA 1498155 33 100.0 33 ................................. GGATCGCTGATGGAGAATACACCCAATTAACAA 1498221 33 100.0 35 ................................. CACCAGACGCAGCATAGCAGTCAGCAAAGTGGACA 1498289 33 97.0 35 ................................A CAGTAACCGATGTTACAGATTCCGGTGTTTATATA 1498357 33 100.0 34 ................................. GGTTAATCCCCCCATTGCTTGTCCGGCCAGTATT 1498424 33 97.0 33 ................................G TGCATGTACAGAAAGCCGTGACCTTTAAGCCGA 1498490 33 100.0 32 ................................. GTGATACGTTCTCCTTTTTCCCCGGTAGTTTG 1498555 33 97.0 34 ................................T TTAACAAGTTCGAAGAAGACGAAGTCGCCGTTAT 1498622 33 97.0 33 ................................A TATACTCCTGCGACACTGGCAAGTTTTTCACCT 1498688 33 97.0 33 ................................T TCAGGCTGCCCGGCATGGCGGCCTGTTCTCGTC 1498754 33 97.0 32 ................................T CGTTTGTGTGACTGCTCTACTGGTAGAATGAC 1498819 33 97.0 35 ................................A CTCCAAAGGAGGCAACAAGTGAAGCATCTGACTAC 1498887 33 97.0 32 ................................T ACTTAACAATACTCGGTCCATATCCTTTTGCC 1498952 33 100.0 36 ................................. GTCAAATAAGTAAACCGCTTTGGTGTCAATTTCCAC 1499021 33 100.0 35 ................................. TTTACCTCTTGGATTAGATCATCCATTCTCAACAT 1499089 33 97.0 34 ................................T TACCAAGGAGGTGTAACACATGAAGAACAATTTA 1499156 33 100.0 34 ................................. GAGCAGTACCACGGTGTCCGTGGTATTGGCTCCT 1499223 33 97.0 32 ................................G CCTTTTTGGTCAGACCGCTTGTGCCGTCCCTG 1499288 33 97.0 33 ................................T CCTTTGTTCAGCTTGTCCATAGCCTCCCCCTTA 1499354 33 97.0 33 ................................A TTTGGATGAGCGGTTGACTTGGGACCGCCAAAA 1499420 33 97.0 32 ................................A CAGGCACCGGATCGGCATCCGGGTTATTGACC 1499485 33 100.0 35 ................................. GCTATCTGCGGCTCTATCATATCGTCATTGATGGC 1499553 33 97.0 32 ................................A AGGGATCTATGGACGCATTGGTAAACGCATGG 1499618 33 100.0 33 ................................. GTAAATGGGTGACGGATACGGTAAATTATTTCT 1499684 33 97.0 34 ................................T TCGCCAGCCATCCAGTTCGCAAGCTGCACACTGT 1499751 33 90.9 35 ..........GT....................T GGCAATGAGTGATAAAACGACCACGCTCGTCTTTG 1499819 33 90.9 33 ..........GT....................G ATCAGCAATAAAGAATTACGCGAATTGTTAGTT 1499885 33 84.8 33 ..........GTAT..................T TTATGGGAAAGCAATGACCCCGATGGCATGATC 1499951 33 87.9 34 ...A......GT....................A AATTGCTGATATCGCAAGGCTGGGTCAGCGACAA 1500018 33 90.9 33 ..........G.AT................... GGCCGGCTACGTCATGATCGTATGTATGCGGTC 1500084 33 87.9 0 ........T.G.......A.............A | ========== ====== ====== ====== ================================= ==================================== ================== 32 33 96.4 34 GTCGCACCCCACGCGGGTGCGTGGATTGAAATC # Left flank : CATTTTTGTGGAAGTAGGTGTTTTCAGGTGCTGGTCTTGATTACGTATGATGTAAGTACAAAAAGCGCGGAGGGCAGAAGACGTCTGTCGCAAGTCGCCAAGAAGTGTCTGGATTACGGTCAGAGGGTCCAAAACTCCGTATTCGAATGTATTGTGGATACGACGCAGTTCCGCCGGCTAAAGTTTGAACTGGAAGAACTGATCGACGAAGAGACAGACAGTCTGCGTTTCTATAACCTGGGAGACAAGTACAAAACCAAAGTCGAACACATCGGCGCAAAAAGCTCATATGACATGGAAAGCCCACTGATCATTTAAGGTGCGAATGCCAAGCTCCCATGATTTCCCCAGGTCCTTCGCACCTCAAATTTTGTCGAAAAGCAGAAAAAAATCGGTTTGTTGAAAAAAGTCAATTCTGGATTTATACTTCTTTTGCAACGTTTTTGGCGGAAATAGAAGGAACTGATGTCTTTCTCAGATCAATCTTAATCATTTTCGCC # Right flank : AACACCATGAATATCATAAACTCCCGGCTCATCCCGTCCCACCCCGCACGCGTACGCAGACCGCAACCAATAACCAGGACTTAAAACAAGATGACGATCCCTGGCTTTTTATAAACGTAAACTGAAAAAATCATTTTCTATACGTTAATGTATAAAAACTAAATCGGCTCACTGCCACGGTATGGAAGTAAAAAGTAAGCGTTCACAACTTTGTAACGAGGGTTGAAGAATTTTGATGGAATTTGGATAATAATGATTGTTTTTTGCTCGATTTATGTTACTATATGGACAGTTGGAGGAGTGAAGATGCTAACCGAAGAACGCCACGGAATGATAATACAGCGCTTACAAGAAAAGGGCGTAGTCAAGATGCAGGAGCTGGCTGAAATGCTCGGGGCTTCGGAATCAACGGTAAGACGGGATTTAATTGATCTTGAGAGCCGTAATTTGCTGAAGAGAGTGCATGGCGGAGCTTCGCTGCTGCCTCATAAAAGCCAGGA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //