Array 1 7168-8351 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXSR01000016.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864827, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7168 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 7229 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 7290 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 7351 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 7412 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [7466] 7466 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 7527 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 7588 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 7649 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 7710 29 93.1 32 .............T.A............. AACAATTTGAAGTTTCTGCGCCAAGTCGTTTC 7771 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 7832 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 7893 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [7898] 7955 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [7966] 8017 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC CC [8022] 8080 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 8141 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 8201 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 8262 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT C [8267] 8324 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 95.4 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 193762-191779 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXSR01000002.1 Klebsiella pneumoniae subsp. pneumoniae strain 3189STDY5864827, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193761 29 100.0 32 ............................. CAGCTGGCCGTTTTGATATGGACGACGCGCAA 193700 29 100.0 32 ............................. CAGAAATTTACCGTTGCGCCGGCGGTTCAGCA 193639 29 100.0 32 ............................. CGCAGCTGGATTCCGAGCGCGTGGTGTTCGGC 193578 29 100.0 33 ............................. AGGTATCAGCAGAAATGCTGACCCGGATCCTGC 193516 29 100.0 32 ............................. GTGCGGAACAAACCAGTAGGTGTCCAGGTCGT 193455 29 100.0 32 ............................. CTAAACCCTTTCCCCTGGACGGAGGCGCTCAC 193394 29 100.0 32 ............................. ATTAACGTTTTAATCCCGATATAGTCACTGGA 193333 29 100.0 32 ............................. TGACAACCAGATCCGAAAATCCTGGAGCCGTG 193272 29 100.0 32 ............................. CCATTTCCCCGAGTCAAAATCAGTAAAAAAAT 193211 29 100.0 32 ............................. GCGCGCGCCTCTTCGAGTTGTCGTATCAGCGA 193150 29 100.0 32 ............................. GGGACAAAAAATATCGGCGCCAACGCGGCACG 193089 29 100.0 32 ............................. CACTGATCGCGGCGTATAGCGATACGGGCCCG 193028 29 100.0 32 ............................. GCTATTGACGGGCTGAAAGAGGTGCAGGAGGC 192967 29 100.0 32 ............................. CATTTCAGGCGGCAGGGCGCGCACAACTTGCC 192906 29 100.0 32 ............................. CATACAGTATTATCATAGCGAATTCCCATTGG 192845 29 100.0 32 ............................. CCACCGAACTGGCCGTGCACATTCACCTCAAA 192784 29 100.0 32 ............................. GCGCTCGACCGCCAGACAATCGGCTTTAACGG 192723 29 96.6 32 .............T............... TTTGCGGAAAAAGTGGCCGCGTATTCCGGATT 192662 29 100.0 32 ............................. AGTGCTACACCGATACTGGCCCATCATTCCAG 192601 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 192540 29 96.6 33 ............................T GGCGGCGCGACAAAAATTATACCCAGCAACGAA 192478 29 96.6 32 ............................A GTCGATCCCCACGGTTGAGAAATTATTGACCC 192417 29 100.0 32 ............................. CGGAGGGTTGCCAACCGATGATTTCAGCAAGG 192356 29 96.6 32 ............................C CCTGAATCCGTCAACGTTTGGAGTCTTGAGTT 192295 29 100.0 32 ............................. AAATAATCGTGCTGCTCTGACGTACCGGGCAC 192234 29 100.0 32 ............................. CGCTTCAGGGAGAAGAAACTTCCTTCGGCGCC 192173 29 100.0 32 ............................. ATAAGGCCTGGCTTTAACTCAACGGAGCACGG 192112 29 100.0 32 ............................. GGATTTCCATCTCCGGCGTCTGACTACGTTGA 192051 29 96.6 32 ..........A.................. ACGGTAATTATTTATGCCCTGGATAATATTGG 191990 29 96.6 32 .......T..................... TCTGACTGTCGAGGCATGATCTGCCCTCCGAT 191929 29 93.1 32 A..................T......... TGCGTCACGACGCCGGCGACAGTGACATCGTC 191868 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 191807 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGACACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCAGGAAAGTTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCTTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //