Array 1 652585-652875 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDNF01000003.1 Paeniclostridium sordellii strain SSCC35109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 652585 26 80.8 38 T....G..T.............AA.. ATGTTTAAATAAATTGAAAATGGTAGTGTGTAAATAGA AT,A [652595,652605] 652652 26 100.0 39 .......................... AATGTTACATTTCCCGTAAATTAAACAAGTCCATTTATT 652717 26 100.0 40 .......................... AAGGAAAATTGTCAATGGACTACTTAAGAATGCGGATAAA 652783 26 100.0 41 .......................... AAGGTATTTGAGGTTTATATTGAGAACCATAAGAATTTATT 652850 26 92.3 0 ......................A.A. | ========== ====== ====== ====== ========================== ========================================= ================== 5 26 94.6 40 GTTATTAAAGAACTATATTGTATTTA # Left flank : GATATGAAACTGGAGGAGCTAAGTTTGAAGCTGGTAGACATACACATAAGACAAGTTCAGGAATTGGAGTTGTAAGAGGTACTGCATATCAAGAATTACTTTGTGATGTTAATTTAATAATACATATTACACATAAGGATTATGATGTAATAGATCATATTTATAAATCTTTTACAACTGATATGCAAAAAACGATGACACTTGGAAGAAATAAAGATATATGCAATTTACTTGATGTTAAGTTAGTAGATATTAATAATTCTAAAGATAAATCAACTGTATTGAAACATAATGCATTTATAGTTAATGATGCTTTTGAAAGCAAAAAAGTTAATTGCACTAGATTTAGGTTAAATACTTTTTACTCATATAATGAAATTTCTAAAAAAGATAAGATAAGGGAATTTGAAAAAGCAATAGCTGGATTTGTATCTAAAGATACTAAAGTTAGACTTAAAAAAAATTATAACTTAGTAGATTCAGAAAACTTAAATGTATAT # Right flank : AGTAATTGGTAGTTAATTTATATATTAAAAAATAATATGATTTTAAGAAAGGGATATAGCTGTTAAGATGGATATGTTTTATGCGAAAGGAAATAAGGAAACAATAGAAGAACACACATATAAAGTGCTTGAACAATTAAATAGAGTAATAGATCTATATAAAGCAAATATAAAATATCATGAGCTAATGAGATTAGCAGTTAAATATCACGATGCAGGTAAAGTAATGCTATCATTTCAAAAGAAATTAAATAACGAGCATTTTAAAAATGTTGAATTTATAAAGCATAAAGATTATATAAAACATAATCATTTATCAAGCTACTTTGTTTTAAATGAAGAGGTTAAAGATCTAGATTATGATGAACTAAGAATGTTATATCAAATTATATATTACCACCATCAGCAAAAGAATATCATATTTATAAAAAACTTAGATGGAGTAGAAGAAATAATAGACTATATTTCAGAAAATATATTACCTAATTATGACTTTAATT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTAAAGAACTATATTGTATTTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:84.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 655146-656084 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDNF01000003.1 Paeniclostridium sordellii strain SSCC35109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 655146 29 100.0 37 ............................. ACATATTGACATAACTCTCTTATTGTTGGGGGATACC 655212 29 100.0 36 ............................. TAAAGTTTATTGGCGAGGACAACAAGTTTCGAACTT 655277 29 100.0 37 ............................. AAGGGTTAACTGCTTTAACGGCTTTAACTGGATCTCA 655343 29 100.0 37 ............................. TATTCCATCAAACTCATAATCCTTTTTATCTATAATC 655409 29 100.0 37 ............................. ATTAGAGAAATAGAAATATATCCTAGTTTCTTAAAAA 655475 29 100.0 37 ............................. AGGTTTTGAGTTTGAATAAGTGTATCACTTACTTTTG 655541 29 100.0 37 ............................. GTAGCAAAAGTCATTATAAGTCTAGTTTGAACTTTGT 655607 29 100.0 38 ............................. TGATAGAATGTTTGAGTCATTGCTAAACTACGCATAGT 655674 29 100.0 37 ............................. TTTTAAATATAAAAATATAAATCTAGGAGAATTTTAA 655740 29 93.1 36 .G..........................A TAAAAAAATTGTATCAAAGTTTATGTTGTAGATAAT 655805 29 96.6 35 ...................A......... TAAGTGATTTAATCACTTTCGTGAACTCTTTTATT 655869 29 86.2 37 ............TC...C.....A..... TTCTCTTCTACAATATGGATACTCTATATTAGTTGCT 655935 29 96.6 27 A............................ AAAATTCGGCTGTGAGTGAGAAAGTAC Deletion [655991] 655991 29 93.1 35 .........T.............A..... CAAGGAAAAAATACTATGGATGAAGTAAATGATTA 656055 28 75.9 0 .........T-....A...AA..A....T | AA [656074] ========== ====== ====== ====== ============================= ====================================== ================== 15 29 96.1 36 GTTATTAAAGAACTATATTGTATGTAAAG # Left flank : GTAAAATACATATATAGTGTAGAGAATTTAAAAAAACATAATTCTGAGTATTTGCAAGAAATCAGAAATACTATAAATAATATAAGATTACTAAATGAAAGTGACATTAAAGCAAAAGATATAAAGGTTAGAGAACTTGATACTGTAACTATTATACCAAGAATTTTAGGAACTGAATATAATAGGGAGAATACTATAGTTATTAGACGAGATATTTTGAATAAGTTATTAAAAACTAAAGAAATTAGTTATGATAGCACTAACAATTGTTATTTTATGGATGTTAAATATGATTTTGAACATGGTCTTTATTTAGATTAGAATATATAAATATGTGTATTTGCAGTGACCTAGTTTTATAATTAAATGGTGTTAATGTATTGAAAATACTACGATATAATTAGGTTTAATATAAAAGTGAGAAAACACTATTGAAGGTTCACTGCAAATTACAATAAAATAATGTATGTAAGTATTGAAAATACTTACATACACTTGGG # Right flank : TGAATGTAGATACTAAAATGGGTTTAATAAAATATAGTTATATAATTATAGTCCAAATTTAAAATACTACAAAAATAACAAAATAAGAAATAATATATAAAAATATACGGAATAATAGTTGATATATAATAAGAAAACCTAGGAGGAACATAATGAAAATTCAATATGTACAAGGTAAACCATTATTTACAACTATAAATAAGAATAAAAAACAATATCCATATTTAACAGACGATATAGAAACTGATATATGTATAATAGGTGGTGGAGTTACAGGAGCCATAGCATCGTATTATTTTAGTAAACAAAATATTAAAACAGTTATACTAGAGAAAAAAAGAATAGCACATTTAAGCACAAGTGTAACTACATCTCTTTTACAATATGAACTAGATGATAATTTATCAGATCTTCAAGAATATACAAGATTAGAAAATTCATTAAAAGCTTATAATCTTGGACTTAGGGCACTTGATGAAATTGAAGAGTTTGTAAATACA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTAAAGAACTATATTGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //