Array 1 54423-55811 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXIC01000005.1 Aliarcobacter skirrowii CCUG 10374 strain LMG 6621 NODE_5_length_108291_cov_113.333, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================================================================== ================== 54423 36 91.7 33 ....................TAT............. ATAGCTTTTTCGTTATTTATTACTATCATTTAA 54492 36 91.7 33 ....................TAT............. GTATTCTCGACATTGGAATCCTCCTTGATTATA 54561 36 91.7 33 ....................TAT............. TTTCCTCCCTTTTTGAATAGGGCACATTTTTAA 54630 36 91.7 33 ....................TAT............. TTCACAACTTGACCACTTCTTCTAGCTAAATCA 54699 36 97.2 36 ......................T............. AACTTGTCCTAAACCCCTTTTGGGTATGGTTAGCCT 54771 36 97.2 33 ......................T............. TAGTATCTGCTACTCCACCTACAGGGCTTTCAC 54840 36 97.2 34 ......................T............. AATATTCTTTAAAGGCTCTACTGATAAGAACTTT 54910 36 80.6 106 ......................TTTT.CC......T TCAGTCATCACTAAAAATTACGAAATCGCCAAGGCTCATTTCTATTTTTAGGATTCAGAAGAGGGGATTGAAACTAAAGTTGCGTATCCATATTTTGTTTTTCTAA TG,C [54941,54944] 55055 36 80.6 107 ......................TTTT.CC......T TCAGTCATCACTAAAAATCACGAAATCGCCAAGGCTCATTTCTATTTTTAGGATTCAGAAGAGGGGATTGAAACCAAATTGTGCTAAAGCATTTCCTTGCCCAGTAT TG,C [55086,55089] 55201 36 80.6 105 ......................TTTT.CC......T TCAGTCATCACTAAAAATTACGAAAAGCTAAAGCTTATTCTATTTTTAGGACTCAGAAGAGGGGATTGAAACTACAACCCAAGCTCTAGGAACTGTCATATCTAA TG,C [55232,55235] 55345 36 97.2 36 ......................T............. GTAAAAGAAGTATCAGAATGAAATAATTTTTCATTT 55417 36 97.2 36 ......................T............. AATAACTCTTCTTCATCACAATCATCTTTATCATAG 55489 36 97.2 35 ......................T............. AAGATGGAAAAATTCTATCGTGTTGATTTCCTTAA 55560 36 100.0 35 .................................... TGAACATCGGCAAATATAGTGATATTAAAAGTGTT 55631 36 100.0 36 .................................... CATCTTTTCAAAGATGTCTTTGTTTGTTATTATAAG 55703 36 100.0 37 .................................... ATCTGAACCAGTCTCTAAAGCTCTTTGAAAGTCTAGG 55776 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================================================================================== ================== 17 36 93.6 48 ATTACAACATTGACCCGATTATAAGGGGATTGAAAC # Left flank : CTCAAAGGATATTTTAGATGAAGTTGCATGATTATATTATTTGTTATGATATTTCAGATAAAAAAAGATTGGTAAAAATATCAAAACTACTTGAAAAAACAGCAGCTAGAATACAATACTCTATATACTTTTATCCAAAAGTAGCAAAAGAGTGTATAGATGATTTAGTAGAAAAATTGAATAAACTAATAAATCAAGAAGAGGATGATATAAGAATTTATAAAATTGATATTAAAAATAGTATCCATCTAAAAAGTGGAATAGATTTGCAAAATCCATTTGTGATTTGATAAGAATTTAAAGGGATTTTAAATGCTTTTAAGCTACTGTTTTGTTTTGTTATTTAAAAATCTATTGTTAACTTTATATAAGATTTTTTTAAGAGTAACAAAAAACTTCTATCTAGCTATTTTTGGGCTAGAGTTTTTTAAAACTACTATCTTTTTTATATTTAAGCAAAATATAAGATATAGAAGTAGTGATTTTATGGTATGTAGAAG # Right flank : CTCTTGTATCCTTTTTTTTGGTTTTTTCTATTCTATATTACAACATTGACCCGATTATTTTTGCCTTTGGCAAATTCAGTCATCACTAAAAATTACGAAATCGTCAAGGCTCATTTCTATTTTTAGGATTCAGAAGAGGGGATTGAAACAAAAAGTCGTATAATTTCCACCATGCGTAAGAGTAATTACAACATTGACCCGATTATTTTTGCCTTTGGCAAATTCAGTCATCACTAAAAATCACGAAATCGCCAAGGCTCATTTCTATTTTTAGGATTCAGAAGAGGGGATTGAAACATAGTGTTGCATAACTTTAATCATTTCTTTTAATTACAACATTGACCCGATTATTTTTGCCTTTGGCAAATTCAGTCATCACTAAAAATTACGAAATCGCCAAGGCTCATTTCTATTTTTAGGACTCAGAAAAAGGGGATTTTGATTTACAATTTTAAAAAGTATAAAGTATTAATAATCTAAAACGACAAATTGTGTCAAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAACATTGACCCGATTATAAGGGGATTGAAAC # Alternate repeat : ATTACAACATTGACCCGATTATTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA //