Array 1 45480-44389 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LSNG01000006.1 Lactobacillus johnsonii strain W1 scaffold11, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     45479	    36	 100.0	    30	....................................	TGAAAGTGTTAAAGGTTTTTTAACAACTTT	
     45413	    36	 100.0	    30	....................................	ATAGTCTGTGCTTTTGCCTGCATAACCAGA	
     45347	    36	 100.0	    30	....................................	ACGAACATAATCTACTAGGAAGATTTATTA	
     45281	    36	 100.0	    30	....................................	TGATATCTTTTAATTTAAGCATTTAATTTC	
     45215	    36	 100.0	    30	....................................	CTGTAGTAGAGAAATTATGCGAAGCGTATC	
     45149	    36	 100.0	    30	....................................	ATCGCAAGATGAAATTTACATTGAATGATA	
     45083	    36	 100.0	    30	....................................	CCCTTTGAGTGTTTAGCCACTTCCTTAACA	
     45017	    36	 100.0	    30	....................................	AAATGCTAAATCCAGAAGACAGTCCCACCG	
     44951	    36	 100.0	    30	....................................	AAAAGGACCAATAGCTTATGTACCAAACAC	
     44885	    36	 100.0	    30	....................................	TTGTATCGCAAATAATCCTTGCTGATCCAA	
     44819	    36	 100.0	    30	....................................	ATTCAAACGCTCTTCGTTCAATTATTAGAG	
     44753	    36	 100.0	    30	....................................	GGGTGCGGTAAGTGTGCCATATCTAAAAGC	
     44687	    36	  97.2	    30	................................T...	TTTATCAAGCAGAGAAGAGGGGTGGGGCAG	
     44621	    36	 100.0	    30	....................................	AATCTAATTTATGGACTTCAAAAGAAGTTC	
     44555	    36	  97.2	    30	A...................................	CAACACTTACTATTGATGATCTGAACTCAG	
     44489	    36	 100.0	    30	....................................	ACTACATCGCCAATGACGGTGTGTCCCATT	
     44423	    35	  75.0	     0	..........A....C.......AT.T-....CTC.	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  98.2	    30	GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC	                              	       

# Left flank :   CTAAAAATATTTTAGATAAATATACGTCTCTAATTATAAAAAAATATATCGAAAATTTAGATGAATATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCATTATTTTTAGAAGATTTACCGCTAGAACTTGATTTTAGTGAGGATTTAAAGAAGTTTCTAAAATTAGAGAATTTGCATTTAGATTTTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCCATCAAACATGTAATTTGAAGACTGTGCCAGTTGTTTGTAATGTCGCTCATTATTTAGATAGTACACAGTTAAACATGTTGAACAATTTGCTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTATGGATATTCTGGTTTATCCGAAAGATGCTGATTACTTTTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATTATTAAAAAATAATTATAAATTATCG
# Right flank :  TTATAAAAGTCATTAGTATTAACTGAAAATATTGATATTAATGACTTTTTCTTTTATTGAATTTGGGAATCTTATCTAAATTACCATTTTCTTTTGCTTCTAAGTAATTAAAATATTCTTCAGAGAACTTACCGTCTGTTAGCCAGACCATGTTATCGTTCCTTTTGGTTTTATTTTTTGTCAAAATACACACCTTCAATAATTTAAATATTATTAATTAAAATCTCTAGTTTTAAAAGGACAATAGAACAGAAAAAATGAGAAATCTAAGATTGAAAAAGGATGATTTTCTATTCATTAGAACAACATATCCTAGTTTGTTTATTAAATTTAAGAACAGTTATGAAGAAAATGGAAATTGTTAATGTTCCTATGCAAAATGAAAGGGATTATGATTATTACTTTGATATAGTTGGGAATTATATAGCTACCTCATTGAATGAAGCGGGGAAATTAAATGAGGACGGTCTAAGACTTGAGGCTGCGTGGGATTATGCAGA

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [11-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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