Array 1 45480-44389 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSNG01000006.1 Lactobacillus johnsonii strain W1 scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45479 36 100.0 30 .................................... TGAAAGTGTTAAAGGTTTTTTAACAACTTT 45413 36 100.0 30 .................................... ATAGTCTGTGCTTTTGCCTGCATAACCAGA 45347 36 100.0 30 .................................... ACGAACATAATCTACTAGGAAGATTTATTA 45281 36 100.0 30 .................................... TGATATCTTTTAATTTAAGCATTTAATTTC 45215 36 100.0 30 .................................... CTGTAGTAGAGAAATTATGCGAAGCGTATC 45149 36 100.0 30 .................................... ATCGCAAGATGAAATTTACATTGAATGATA 45083 36 100.0 30 .................................... CCCTTTGAGTGTTTAGCCACTTCCTTAACA 45017 36 100.0 30 .................................... AAATGCTAAATCCAGAAGACAGTCCCACCG 44951 36 100.0 30 .................................... AAAAGGACCAATAGCTTATGTACCAAACAC 44885 36 100.0 30 .................................... TTGTATCGCAAATAATCCTTGCTGATCCAA 44819 36 100.0 30 .................................... ATTCAAACGCTCTTCGTTCAATTATTAGAG 44753 36 100.0 30 .................................... GGGTGCGGTAAGTGTGCCATATCTAAAAGC 44687 36 97.2 30 ................................T... TTTATCAAGCAGAGAAGAGGGGTGGGGCAG 44621 36 100.0 30 .................................... AATCTAATTTATGGACTTCAAAAGAAGTTC 44555 36 97.2 30 A................................... CAACACTTACTATTGATGATCTGAACTCAG 44489 36 100.0 30 .................................... ACTACATCGCCAATGACGGTGTGTCCCATT 44423 35 75.0 0 ..........A....C.......AT.T-....CTC. | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.2 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : CTAAAAATATTTTAGATAAATATACGTCTCTAATTATAAAAAAATATATCGAAAATTTAGATGAATATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCATTATTTTTAGAAGATTTACCGCTAGAACTTGATTTTAGTGAGGATTTAAAGAAGTTTCTAAAATTAGAGAATTTGCATTTAGATTTTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCCATCAAACATGTAATTTGAAGACTGTGCCAGTTGTTTGTAATGTCGCTCATTATTTAGATAGTACACAGTTAAACATGTTGAACAATTTGCTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTATGGATATTCTGGTTTATCCGAAAGATGCTGATTACTTTTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATTATTAAAAAATAATTATAAATTATCG # Right flank : TTATAAAAGTCATTAGTATTAACTGAAAATATTGATATTAATGACTTTTTCTTTTATTGAATTTGGGAATCTTATCTAAATTACCATTTTCTTTTGCTTCTAAGTAATTAAAATATTCTTCAGAGAACTTACCGTCTGTTAGCCAGACCATGTTATCGTTCCTTTTGGTTTTATTTTTTGTCAAAATACACACCTTCAATAATTTAAATATTATTAATTAAAATCTCTAGTTTTAAAAGGACAATAGAACAGAAAAAATGAGAAATCTAAGATTGAAAAAGGATGATTTTCTATTCATTAGAACAACATATCCTAGTTTGTTTATTAAATTTAAGAACAGTTATGAAGAAAATGGAAATTGTTAATGTTCCTATGCAAAATGAAAGGGATTATGATTATTACTTTGATATAGTTGGGAATTATATAGCTACCTCATTGAATGAAGCGGGGAAATTAAATGAGGACGGTCTAAGACTTGAGGCTGCGTGGGATTATGCAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //