Array 1 25790-28380 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAW01000039.1 Escherichia coli strain 43-1BK entry39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25790 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 25851 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 25912 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 25973 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 26034 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 26095 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 26156 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 26217 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 26278 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 26339 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 26400 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 26461 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 26522 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 26583 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 26644 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 26705 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 26766 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 26827 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 26888 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 26949 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 27010 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 27071 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 27132 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 27193 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 27254 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 27315 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 27376 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 27437 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 27498 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 27559 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 27620 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 27681 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 27742 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27803 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27864 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 27925 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 27986 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 28047 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 28108 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 28169 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 28230 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 28291 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 28352 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 551034-552589 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAW01000043.1 Escherichia coli strain 43-1BK entry43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 551034 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 551095 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 551156 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 551217 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 551278 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 551339 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 551400 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 551462 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 551523 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 551584 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 551645 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 551706 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 551767 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 551828 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 551889 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 551950 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 552011 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 552072 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 552133 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 552195 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 552256 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 552317 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 552378 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 552439 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 552500 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 552561 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //