Array 1 705-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKHN01000026.1 Acinetobacter ursingii strain TUM15109 sequence026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 704 28 100.0 32 ............................ AACCCTTTTAAAGTAAAGCCACCCTGACTCGC 644 28 100.0 32 ............................ GTTAAGGCTTAATTATAATGGGATTCCTAGGA 584 28 100.0 32 ............................ GCTTGATAAACACCGTATTTAGATTTGATCTC 524 28 100.0 32 ............................ AGTTGAAGCTTGTTGTGTAACTTTCATTCACG 464 28 100.0 32 ............................ AGAACCATTGTTAACTGAAAATGTACTTTTTG 404 28 100.0 32 ............................ ATATTTGTTAGCTCGTTAAAAATTAATGCTTT 344 28 100.0 33 ............................ CATTCAAAAACGGTGGTTGTGTAAGATATTGAT 283 28 100.0 32 ............................ GATCAGGCCGAGAGTGGACGGACTGTAAAATC 223 28 100.0 32 ............................ AAATATAAAGATAGGATTATGAGTGGCGAGAG 163 28 100.0 32 ............................ AGTAAACATCATAATGCAAAGAATAGGTACGC 103 28 100.0 32 ............................ TCATACAGAACTGAATAATCACTCGCAGGCAA 43 28 96.4 0 .........A.................. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 32 CTTTAATACCGCATAGGTAACTTAGAAA # Left flank : TGATTTAAGAATCGTATCACCACTTAATTTGCCGCTGGCGATAGGCGTAAGCACACCGATGGTTAAGATAATAACGCCAATATTTAATCCATGTTGTTGTAAATAAGGGAAAAATTGACTTAATGGTGTAAGCTTAAAGAAGATTAGAACACCCGCAGCAATCGTGACTGCCGCATTTTGACTGAAAATACCACAAGCCAGTAAAACGAGTAAAACCAACAGATTGACATCAAGCTGTGACATGATCATGGTAATAAAAGCGTATATTGGGGGAGTGGTATATTGTATAACGATTTTTTATTTTACCAATGGTTGAAAAAGATCTTTTTTTACTCTGGTGTATAGTAGCTTACCAATTAGGGCTATAGAACCCAATATAACATGACTCTTTAATAATTTAATAAATACAAAGACTTATCCTTTGAGTGAAAAACATTGATTCAAATGAATTTTGAAAGCTAACTTCTTGTACGATAAGTTATTTTTTATAATAATTTACT # Right flank : AAGTCTTAGTGACCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAATACCGCATAGGTAACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTTACTACCGTATAGGTAGCTTAGAAA with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 188-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKHN01000132.1 Acinetobacter ursingii strain TUM15109 sequence132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 187 30 100.0 30 .............................. ACTAAGCGTTTTGTGCGATTACCTGTGCTG 127 30 96.7 30 ............................T. AAATGCATTGTCTAGTGCTTCATCTGCACC 67 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================== ================== 3 30 98.9 30 GTTCATGGCGGCATACGCCATTTAGAAAAC # Left flank : TTAGAAATCAAATGCATTGTCTAGTGCTTCATCTGCAC # Right flank : CACTAAGCGTTTTGTGCGATTACCTGTGCTGGTTCATG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7516-6649 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKHN01000056.1 Acinetobacter ursingii strain TUM15109 sequence056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7515 26 92.9 32 --.......................... TCATACAGGAATGAATAAACAATCGCAGGAAA 7457 28 100.0 32 ............................ AGTTTTTGTGAACAAGCGAGTGACCGAGAGTT 7397 28 100.0 32 ............................ ATAAAATCACAAATTCATAAATCATTTTATGA 7337 28 100.0 32 ............................ ACCCCTATTGAGCCTGAACGAGCTAAAACAAA 7277 28 100.0 32 ............................ TAATCGGGGGAGAATCTCATGGGCGAATTAAA 7217 28 100.0 32 ............................ ATACAATCGGCAATTCATCACGACGAGCAACT 7157 28 100.0 33 ............................ AATCAATCCGATGTAGCGCAAATGAGCGCATCT 7096 28 100.0 32 ............................ GAATACTATTGATATTTATGACCCGCGCACAA 7036 28 100.0 32 ............................ AGTGACAGTCATAATTGGGTGTTGTGATGTAT 6976 28 100.0 32 ............................ ATTGTTGGAAAAATTAACCCAAGTTTGTTTCA 6916 28 100.0 32 ............................ GCCCGCGAGCCGCAGATGATGAGACAGAGGAT 6856 28 96.4 32 ..........A................. CGTTGTTCTAATGTGTAATATTCACCTTTAAA 6796 28 96.4 32 ...............A............ TCCCAGAGCCTGGAGTCGCTGATAGAAAGTTA 6736 28 100.0 32 ............................ TTGTTGTGTATAGCCGTAATAGCGTCCATTGA 6676 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.0 32 CTTTAATACCGCATAGGTAACTTAGAAA # Left flank : | # Right flank : GCTTCGATCTACCGAAGAACCGCACTTAAACCCTTCATTACCGTACAGGTAGAGGTAGTTTGAAGAATTGCTCAATGACGAGTTAAATTTCATGATCCTATATCTTTCATTGTAAGTATTTCGGAATTTTAAAGTTATAAAATCAGTTAAACTATGCCATCGCTTATTTCGGATATTGTTATGCTCTTGGAAAAAATGTTGCAATCACAAGGTTTTGGTTCACGTAAACATTGTCAGCAACTGATTAAAAACGGAGCAATAAGCATTCATGGCGAAGTGCAAACAGATCTAAAATGTCGTGTCGATGTGAAAGATTTAAACTTTTCAGTATATGGTCAAGATTATATTTATCGCGAAAAAGTGTATATTGCACTGAATAAACCCCAAGGTTTTGAATGTTCACATCAACCTCAGCATCACAAAAGCGTCTTTAATTTATTCCCAGAGATTTTAAGAGAACGTGGACTCGCTGCGGTTGGGCGTTTAGATCAAGATACAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAATACCGCATAGGTAACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTTACTACCGTATAGGTAGCTTAGAAA with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 735-169 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKHN01000066.1 Acinetobacter ursingii strain TUM15109 sequence066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================== ================== 734 26 100.0 34 .......................... AGTCGTATAGCTTTCACTCACAACATTATATTGC 674 26 100.0 34 .......................... AATGACATATAAACCAGCGAAAATAGTAAATAGC 614 26 100.0 34 .......................... AATATACTAAACCGAAGAGCCTTAAAACACGGGC 554 26 100.0 34 .......................... TGTAATCGTTGTAAAAGATCTGGATTTTCGTCGC 494 26 100.0 34 .......................... AGAAAAAGATGATACTGACTTAAATATAACCAGC 434 26 100.0 34 .......................... TGATAAGTTTTACCTGAGTATTGAATAACATCGC 374 26 100.0 34 .......................... ATTGGTTGAAAGCTAGAACAGCTGGAATGAGTGC 314 26 100.0 34 .......................... TATTTTAGACCCCATGTATCCGACTGCAACCGGC 254 26 100.0 34 .......................... AATTCCAGCAATCGGAGCAGCCAAACCTTGAAGC 194 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ================================== ================== 10 26 100.0 34 TTCCTATCGCATAGATAGCTTAGAAA # Left flank : TAAAAATTCAGCTTTTTCGCTTGGTAAAAGTTTTGCATCCAAAATCTCGGCATCTGCGGCCCATTCTAGAGAAAGCGTTTGTAAAACTAGCGCAGAGCTTTCTGCAAAATAATCTTCGGTTCCCTGACCTAAATGAGCATCGTATTGACGTAATGCAGTCACTCCAAAACGAATAAAATCACGAATTGTTGTTAAGTTTTCTGCGGCTTCCTGTAATTGTTCAGGATTAATGGTCGGTCGCTCCACTCAGGGGTCTCCAAAAGATGATGATGCAAAACGGCTTATGATACCTTGTTTTGTCTTGCTTTTTAATGCCTAAAACGAGTGGATTCAATTTTAAATCAAGTTGACTTATTGCTCTTTTTAAATCAATATTTTTCTTACTCTTTAATAATATAATAAAATCATACGCTTATGATTTAACTTATTTTTAAAGCATAATATCAAATTATTAAACTAACTCATTGTTATTAAATGATTTATTAATAAGAGTTTATAGC # Right flank : AAGTTTGACCGCCATTAAAATATTCATGAATCCGCTTCCTATGTAAGCATCCGGCTAACACAGCCTTACCAAGCGATCCTATAAGCCTTAATTTAGTTCCCACCTAAAAACAAGTGGGGACTTAATCCATGAACATGGATATATATTCAGCAACACCTCCTGTTGCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCTATCGCATAGATAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched TTCCTATCGCATAGATAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 90199-89225 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKHN01000010.1 Acinetobacter ursingii strain TUM15109 sequence010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================== ================== 90198 26 100.0 34 .......................... ATGTATCTGGCACATGCCGTATCGAATAGTTCGC 90138 26 100.0 34 .......................... TGTGGAGTATCCCTCTGATATTGCAAAATGTTGC 90078 26 100.0 34 .......................... AAACGCAATTCTAATGATGTGAAATTGCATAGGC 90018 26 100.0 34 .......................... TGAATTGAATCATCGTCACCGCACAATACTTGGC 89958 26 100.0 34 .......................... AGAACGTCTCAGTCATTGAAGATCATCAACACGC 89898 26 100.0 34 .......................... TTTTGATTGGCGTGATCTGCCAAATGGTTCTGGC 89838 26 100.0 34 .......................... TTCTGGAATCAGCAAAAGCTTTCCACCTTCAGGC 89778 26 100.0 34 .......................... ACACTGTTCTGGATTTTCTTCACACTTAGAAGGC 89718 26 100.0 34 .......................... TCTCAGAGCTTCAAATATGCTATGCGTTGCTTGC 89658 26 100.0 34 .......................... TGATACGGATCAGCCCGACATTGATGATCAAGGC 89598 26 100.0 34 .......................... ACTTAAAGACTTTACCCGTTACCACAAGTGATGT 89538 26 100.0 22 .......................... AAGAAGAATGGGATGCGGCTGT Deletion [89491] 89490 26 100.0 34 .......................... TGAAAATAGCGATTGGCGTGATACGCCTGACGGT 89430 26 100.0 34 .......................... AAAGTATCGATCGCATTGCTAATTCAGAACGTGT 89370 26 92.3 34 .............A....T....... GCAACGAACAGTTAGAGAGCAAATGCTCACGGGC 89310 26 92.3 34 ..................T......G ATTGGAAATGGACAAGTTTCAAAAGTGGCGCGAT 89250 26 76.9 0 .................AT...TTTT | ========== ====== ====== ====== ========================== ================================== ================== 17 26 97.7 33 TTCCTATCGCATAGATAGCTTAGAAA # Left flank : GTATGCGATAGAAGTAGAGCTCAGGAAAAAGACCGATGGTACAGCGGAAGACCGCCGCGAATACCGACAACAGCATAGTCAACCAGTGATGCAACAACTATATGAATGGCTCAACCAACATCATCTGACAGTGCCATCGAGTTCTCCCACCGCCAAGGCCATCAATTACACTCTGAAGCGTTGGCCAGCCTTAAGCCGCTATCTGGATGATGGCAATCTACCGATATGCAATAATTGGGTCGAGAATCAGATGCGTCCCTGGGCGTTGGGGCGCAAGAACTGGCTGTTTGCAGGTTCGCTGCGCAGTGGTCAGCGAGCGGCAAACATCATGACTTTAATCCAGTCAGCAAAGCTGAATGGCTTGGATCCGTATGCCTATTTAAGTGATGTGCTGAAAAGGCTGCCGACACATAAAGTGACCCAGATTGAAGAGTTACTGCCACACTGCTGGAAACCTAAATTGAATTAAAAATTGGTATGGGATTCAGCGGACGCTTACC # Right flank : CGAGACTCCAAACATTTTGTTTTTAATTGCTGCATCGCTAAAGGATCCATCGGTGCAGTCATCATGGCCCGATAAGCCAAACATTCCTGCGTTTCACCTGTTGCTTGAGATTTGGCATTCAAGCTATGACATCCCATCAGTCCCAAAGAGAAAATACATCCTAGAATAAATTTGATGAACATTGGATTTTCTATAACTTAGTATTTGCCGATATCAACTCAAATTTTAAAACGCAAAACAGCAAATAGAAACCTTTGAATAGACTTGTTTCATAAAGTCCTTTCATTTTGCCTATGGGAGAAAAATAAAGAGGGTTTAAACAATGATGAAAGACGTCATAGTGTATAGATCTTTTAAAATTCGCTTATTTTCTTAAAATCTTCTGCCAATATATAAGCATTTTAAAAAGATGAGCTTAATACAATGACAAATCCAGATATTCAAAAGGTAGAACTCGCAAAAGCCTATCGTTTACTTAATCATGGCCCTACTGTACTGGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCTATCGCATAGATAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched TTCCTATCGCATAGATAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3727-12763 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKHN01000050.1 Acinetobacter ursingii strain TUM15109 sequence050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3727 30 96.7 30 ............................G. TGATCTAACACAGCCTGTTAAAAATGGTGA 3787 30 96.7 30 .............................G CACGTAAGATACAACCCGCTGACGACTGCA 3847 30 93.3 30 ............................GA TTTGAATGTTCTTTGATGACCATCCTGCAA 3907 30 100.0 30 .............................. TAAGTTGTTGACTTCAATCAAGCCCTCTGC 3967 30 96.7 30 ............................A. TTCGCTCTGTTTGCTACAAGGCTTCGGAGT 4027 30 93.3 29 ............................AA AAAAATCAACTTGTCTTCGGCTTTCAAGA 4086 30 96.7 30 ............................A. TAAGATTAAGTTTGAGCTTTGCTTTTTTTC 4146 30 93.3 30 ............................AC AATCAGGACACATAACAGCAGATTCGGTTT 4206 30 96.7 30 ............................A. TAAGATTAAGTTTGAGCTTTGCTTTTTTTC 4266 30 96.7 30 ............................A. ACATTTTAAAAGCTATGGAAATGTCACACG 4326 30 96.7 30 .............................G AAACAACCTGTATTGGTGCGTACACGGCTT 4386 30 93.3 30 ............................AA CCAAATTAAAGCCCAATGATTGATAGAGAT 4446 30 93.3 30 ............................AC TATCTGCGGGAACAGGTTTAGCGGTCCAGT 4506 30 96.7 30 .............................G ATTGTGTCTGAGCTAAACGACCCATTTGAA 4566 30 96.7 30 ............................A. TACAAAAAAAGGCACTAGCTTCCTAGTGCC 4626 30 93.3 30 ............................AG ATACTTGATACAGAAATACGTGGCATGAAT 4686 30 96.7 30 .............................C AAATGCATTGTCTAGTGCTTCATCTGCACC 4746 30 93.3 30 ............................AC ACTAAGCGTTTTGTGCGATTACCTGTGCTG 4806 30 93.3 30 ............................AC AAAAAAAGGTCGTGATGCTATTGCCTCACA 4866 30 96.7 30 ............................A. CAGGGGTTTTTCGCCAGTCTTCTGGTGTTT 4926 30 93.3 30 ............................AG TCATTACCAAGTGCAGACCTTCACAAAAGT 4986 30 100.0 31 .............................. TTAATGACATAAACTATAGTTGTCTTTTAAT 5047 30 96.7 30 ............................A. TTAAGGCAATGCACTTACAAACATAAAGTT 5107 30 93.3 30 ............................AA ACTTTGAGTAAAATACTCATTAACTTGTTC 5167 30 93.3 30 ............................AC AAACTGGCTACAAGCAATTTTAACCCCTCT 5227 30 96.7 30 .............................A AAGCGACAACTGTAGAAGCTAGACCGAGTT 5287 30 96.7 30 .............................G TTAGTGTTGGCGCATCATTGCTATCTCTAG 5347 30 100.0 30 .............................. ATTTTTGAGTAATAAAAAATGTCACATTTT 5407 30 93.3 31 ............................GA TTACAGATAATACGATTATTAAAAGCCCAGT 5468 30 96.7 30 .............................G ACATTAAGCAAGGCTGTTCTAATGGTGCTG 5528 30 93.3 30 ............................GA GAAACATAATTGCGGTTGATCCAGAAAAGC 5588 30 96.7 30 .............................A ATAAGCCAATTGGTGGCTGATATGACTGAG 5648 30 93.3 30 ............................AA TATCAAGCATCAATACGGTAAATACATCAA 5708 30 96.7 30 ............................A. TAGTTGGATCAAGCGGAATTTCACAATACA 5768 30 100.0 30 .............................. CATTTCTTTTAATCGTGCCAAATGTTCATC 5828 30 100.0 30 .............................. TTTATATAAAAACAATTTTTCTGTTGAACA 5888 30 96.7 30 ............................A. ATTTTGTCATCACAAAGACGGCCATCTTTT 5948 30 96.7 30 ............................A. TAAGAAATGGCAATAATGATGCTGCACTGG 6008 30 100.0 30 .............................. ATGTTGAAGGCATTATCGCTGTTGATCAAA 6068 30 100.0 30 .............................. TAAATTTTAACACACATACAGAAGCGGTCA 6128 30 93.3 30 ............................AA TAAAGACAAGATCATCTACAGATGATTTAG 6188 30 100.0 30 .............................. TAAATACTTTGAAAACTGGTGCTTGGTAAT 6248 30 100.0 30 .............................. TAAATGATGTGTCGATCTATGCCTTACTAC 6308 30 93.3 30 ............................AA GAGATTTGCAACGTGAGGCAGGCAAATCAT 6368 30 100.0 30 .............................. CTGAAACTTCTATCCAAGAAATATTTGTAC 6428 30 96.7 30 .............................G CATTTTCAAAAGATGATTTGCTCAAAACTT 6488 30 93.3 30 ............................AG AACCATTTCCGTTGCCGGAACCATTACTTG 6548 30 96.7 30 ............................A. ATGCTTGGTATGTTCATGGAAGCATTTCCA 6608 30 93.3 31 ............................CG AACGACGCTTAATAGAGCGGGGCACACTACT 6669 30 100.0 30 .............................. TGATAACTAAGGGTTTTTCTTTGGAACTGG 6729 30 96.7 30 ............................G. ACAAGAGACTCGCAGCGTATTTTTTAAAAA 6789 30 93.3 30 ............................AA GAAGATGCAAAACGTCGTTTTATTCGCGAA 6849 30 93.3 30 .................T...........G TAGGAAGTTTGAAATGTGGTTCTGTGCCTA 6909 30 93.3 30 ............................AG AAGTTTTATGAGACTTGAGGCTAATACTTC 6969 30 93.3 30 ............................AA CCAACACTAGTATCGTCATAATCATGATTA 7029 30 93.3 30 ............................AG TGAAACCAGCCCACTACGCATTTCTTCACG 7089 30 96.7 30 ............................C. AATATTTTTTCTATAATTAAATTTTAAGTT 7149 30 93.3 30 ............................AG AATCGTCTAGCAATTGACAATCGGTTGGCG 7209 30 100.0 30 .............................. GCTTTTTACATATTTGTAAACTAGATTTCT 7269 30 93.3 30 ............................AA TTTGAAATAACTGTCGGGTCTATTTCTAGT 7329 30 96.7 30 .............................A AGAAAAACCCTTAGTTATCAAAAGCTTATA 7389 30 93.3 30 ............................AG TCTTCACGATCTATCCCGATCGGTTCAATT 7449 30 93.3 30 ............................AG AATCGCTTTTACCCACAGAACGCAGATTAT 7509 30 100.0 30 .............................. TTGTCACAGTCACATCAGTTGGATTTGAGA 7569 30 93.3 30 ............................AC ACTGTAAAAATCAAAGACAAACCTAAACTA 7629 30 93.3 30 ............................GA TCAACTCAACAGAAACATTATCAGGATGCA 7689 30 93.3 32 ............................CA TGACCACAAATTCTTTTTACAACTTTTACTTT 7751 30 96.7 30 .............................A TCCATTAAAAATTAAGCCCCTTATAGGGGC 7811 30 93.3 30 ............................AA AAAGGAGATTGATAAATAGAACCTTCAATC 7871 30 93.3 30 ............................AA TGATATTGAAAAATGAATTTTAACTATTGT 7931 30 100.0 30 .............................. TGGCTTATCGCTGGTCATCAAGAATGATTT 7991 30 96.7 30 .............................G TAGTTGTTGTTGTTGTATTACCATTTGAAT 8051 30 100.0 30 .............................. TTCGCGGTTATTTTTTGCTATCGCAAAGTA 8111 30 96.7 30 ............................G. GTACCGATTTTTCGAGTCGGCGACATCGGC 8171 30 96.7 30 ............................A. GTTTGACTTGCTCATTCATTTTCTATCTCG 8231 30 96.7 30 ............................A. TCACAGTGCCCGTAGCGTCACCAGAAATTG 8291 30 93.3 30 ............................AG TCATAGAATGGCTTTGTTTTTAATCTATGG 8351 30 96.7 30 ............................A. TTTTAATAACAACAAGATTACTGTTTGGAC 8411 30 96.7 30 ............................A. CTGGAAACCGCCTAACGTGTCTTGGAGATC 8471 30 96.7 30 .............................G TTCCCAGACAGCTCAACCATGGGTGCTTTC 8531 30 96.7 30 .............................A ATTGTAGTGATTTTGAATTTTGTGATTAAT 8591 30 96.7 30 ............................A. AAATATCTATGGCTTCATAACCAATATCAT 8651 30 100.0 30 .............................. TTTAACTAAAAACTTAATCTCTTTCGTTTT 8711 30 93.3 30 ............................GA TCTTCTGATTACTTGACTTGTTGTTGTAAG 8771 30 100.0 30 .............................. TATCGATTTTGCTGCATCACTTAAATGTTG 8831 30 96.7 30 .............................A AATGAGTTAAAAAGATGGAAACAATCGGTA 8891 30 90.0 30 ..........A.................AG TGGCCTCATAAATGCTTGCGCCAGTAGCGT 8951 30 96.7 30 ..........A................... TATGCGGAACGATATGATCGACCACCGTAG 9011 30 90.0 30 ..........A.................AG TAATTAACGCTGGGCTAGATAATGTTTCAC 9071 30 90.0 30 ..........A.................AA TGGATCTAATTCAGCAAGCTCATCATTGTT 9131 30 90.0 30 ..........A.................AG ACGTAAAATATCGTCATGCAGTCGATTTCG 9191 30 93.3 30 ..........A.................A. TAAGAGCATCGTCGCATAAGTATGGCGTGC 9251 30 90.0 30 ..........A.................AG ATGAAGAAGCAGACAATCAACAAGGTATTT 9311 30 90.0 30 ..........A.................AA GTAAAGAAGTTGGAGAAAAATTGGTTGAAC 9371 30 90.0 30 ..........A.................AG TTCGCATAGTTGGAGGCTGTAAGGTTGGTG 9431 30 93.3 30 ..........A..................C AATTAACTCCATGACTGCATAGGCACCAAT 9491 30 93.3 30 ..........A..................C CAACAGACGCGGAATCAACGACAAGTTTAT 9551 30 93.3 30 ..........A..................G TTTTGCTCAAATTGTCGAACCATTGCACAC 9611 30 90.0 30 ..........A.................AC ACAGAATTATTTATACGAATATTGTTGGTT 9671 30 96.7 30 ..........A................... GCCTTGTCCACCTTTTGAATAAAGCAGATG 9731 30 90.0 30 ..........A.................AG ATAATAATATCCCTGAAGTTGAAGACTATA 9791 30 90.0 30 ..........A.................AG GCTCTTTTAAAACGGCTTCTACAATTGAAC 9851 30 90.0 30 ..........A.................AC TATAACCAAGTGGTATAGGGAGGAAATGAT 9911 30 93.3 30 ..........A.................A. ACATGTGCTGTATTGTTAAATTGCTAAGAA 9971 30 93.3 30 ..........A.................A. AAGGATTTTTAAATGAATATTGAAGAATAT 10031 30 90.0 30 ..........A.................AA TAACTTAAAGCATCTGGTAATTTCATTGAT 10091 30 93.3 30 ..........A..................A ATCTCTTGCTCAGTTATCATTCAACCTCCC 10151 30 96.7 30 ..........A................... ATATTTTCTCTCGACAATAAAAGGAAATAA 10211 30 93.3 31 ..........A.................A. ACCACTCAAAATCATATCCACCTTTTTCAAT 10272 30 90.0 30 ..........A.................AG ATATTAATCACGAAAGGTCAGGGTTTAGAA 10332 30 93.3 30 ..........A..................G TACCAGAACCGTCACCATTGCCATCCCCTG 10392 30 90.0 30 ..........A.................AC GTTAAGACAAATTCAGGAATTTGTAATCAA 10452 30 96.7 30 ..........A................... TTTCTGAGCAGTTCGTATGCTGCGATCAGG 10512 30 90.0 30 ..........A.................AA ATTATTGCAAGGTCATAATGTTTTTGCAGA 10572 30 90.0 30 ..........A.................CA GTCTTGTTACCGCCATTAAGTTACACCGAA 10632 30 90.0 30 ..........A.................AG TGCATCTGCTCATACGTCAGTACAGTTCAA 10692 30 93.3 30 ..........A..................A ACGCCTATAATAATTATTGGTCACTGTTAG 10752 30 90.0 31 ..........A.................CA AAAATTTGAGGAGTAGCTACTCATGGCACGT 10813 30 90.0 30 ..........A.................GA TAACCCAGTGTGGCACTGGTTAGCTATTGC 10873 30 96.7 30 ..........A................... ACCGAGCAATTTAGCAACATTTGCAGCCGT 10933 30 93.3 30 ..........A.................A. ATTGGTCATTAATACGATCGACAATTTCGT 10993 30 93.3 31 ..........A.................A. TTCACGGCAAATAGGGGCGTAGTTCTTCAAT 11054 30 90.0 30 ..........A.................AA TAGAAGCTGGACAGGTGTTTAATGCTTGCA 11114 30 90.0 30 ..........A.................AA AAAGAGGCTAATTGTTAGCCTCTTCAGAAA 11174 30 93.3 30 ..........A.................A. TTAGCATCCCTAATGGCAGGGCAATATATT 11234 30 90.0 30 ..........A.................AA TCGTCACGAAATAATACAATCTGATATTTT 11294 30 90.0 30 ..........A.................AC ATCATCCAGTGTAGCCAGTTGTTTCTCGTA 11354 30 93.3 30 ..........A.................A. ACTCAGGTGCTTGGCAGAAAAACGATGAAT 11414 30 90.0 30 ..........A.................AC TAATGCGACGAAATATAACGTTACGCCATA 11474 30 93.3 30 ..........A.................A. GCGCGACTACACCATTGCCGCGTTCTCTGT 11534 30 90.0 30 ..........A.................AG TCGAAAAAATCAGAAACTTTTTCAAAAAAA 11594 30 93.3 30 ..........A..................A GACCCTAGCCCCTACGGGGGCTAACTTATT 11654 30 96.7 30 ..........A................... TTTATCAGCTTCAGAGATCACGTAGTAAGA 11714 30 90.0 30 ..........A.................AA TAATTCGTGGTGTAACTCCTAGAGAGGCTT 11774 30 93.3 30 ..........A.................A. GAAAGTGGCATCTTTGTTGTGTACTAAGTA 11834 30 90.0 30 ..........A.................AC TTCTAAGTACAACTAAAACACCGTAATTAT 11894 30 96.7 30 ..........A................... TATTGTGCGTTTAGATGTGCTGTCATAGAC 11954 30 93.3 30 ..........A..................A ACACGATTCATTACATGGAGCGTAACCACA 12014 30 96.7 30 ..........A................... TCAAGCTTCGCTTATGGGCATTCCGAGTGA 12074 30 93.3 30 ..........A.................A. TCTCAACGTCCTCGGCGTATTCGTTTTCGT 12134 30 93.3 30 ............................GA ACACGCTGAAAAGCCATGGATCCGCGACAT 12194 30 96.7 30 .............................G ACGATTCTCTTTTTGCTGCTCATTTTGAAT 12254 30 96.7 30 .............................A TACCAACATTTTGAAGATCAACATATTCAG 12314 30 93.3 30 ............................GA AAGCAATGGATAGAATAATTCGTAATTCGT 12374 30 96.7 30 ............................A. TTGGCAATGTTACAGATGAGTTCTGCAAAA 12434 30 93.3 30 ............................AA CATACCCAAAAAGTCTTTGATCTTATTGAT 12494 30 93.3 30 ............................AG CAAGCAATAGTGAGCCAACCTTATCTGTTA 12554 30 96.7 30 .............................A TCCCCAAACGAAAGCAAATTCATGCGTATG 12614 30 100.0 30 .............................. TAAGCTGCTGAATCGCCCACATCTTATTGC 12674 30 86.7 30 ..........A.......T.........GA TCCAGAAGGGGTACAACCGATTAAGCCTTT 12734 30 93.3 0 ..........A..................G | ========== ====== ====== ====== ============================== ================================ ================== 151 30 94.5 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TAGAGCAACTGAATCTAACTCATTGGTTAGCAAGGCTGCAAGATTATGTACATATCTTATCTGCTCGTAAAGTTCCTGAGGATAAGATCAACGGCTATGCTACTTATTTTAAAGTTAATCCAAAATTGACGGTTGAGCAGCGTGTTGTTCATCAGGCAGAACGCCGTGGAATTTCAATTGAAGAAGCACAGGAACACTTTAAAGCATTGGATCTGATGGAGACCTTTGAACCTTATATCAATATGAAAAGTCAAACCAATGATATGAACTTCCGTTTGATTATTGGAAAAAAACGTGTTGATGAAGCAAATATTGGAAAATTTGGAAGCTATGGATTAAGTCGTACATCCACAGTACCTGAGTTTTAACCCAATATTTTTTACACTCTTTAACAGCTTAATAAAATCAATAAGTTATAACTTTGCTTTAAAACTTTGGGTATTTTATACTTTTTAGGGATAAAGCACTGTTATAACTTTATTTTTTGCTTTATTCTTACT # Right flank : CAAACGATGTGTAAAAGTTTAAGCGGATTGATTCACGAGACTAGAGTATGGAATCTAGCCGATCATAAAAATGAGTTAAAAAGGAATGATATAAACAAAAACGCACTGCTTCTGGCGAAACAGTGCGTTAAGTTAATAAGATTATGCTGGTAAATCGAACCAGATCATTTCACTATCTTCAAGTGCATGAATCGTAGTTTTCTCATCAAACAATAAAGCATCACCTGCTTTAACAATTTGATTCTCAATCATAATTTGACCTTTAATCACATGCGGCTTTGTTGCACAAACCTAGAGCCTATAAGGTTTATTCAGTCCTATAATTTCAAAATGAATAAACCTACTCCTAAAACTTATCGTACAACCAACTGGTCTTCCTATAATCGCGCTCTCATTAATC # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : GTTCATGGCGACATACGCCATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //