Array 1 640180-642462 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822006.1 Streptococcus thermophilus isolate STH_CIRM_16 chromosome STHERMO Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 640180 36 100.0 30 .................................... AGCATTTCCAACTTAGCCCGTCTTTTGTTA 640246 36 100.0 31 .................................... CTATGGCTAAGATAGGTTATGCGCGTGTAAG 640313 36 100.0 30 .................................... CGTTGCGTTTTTCAAGGTAATCTCGGAAAG 640379 36 100.0 29 .................................... GAATTAAGACCGTAGCTCAACAACAGGAA 640444 36 100.0 30 .................................... CTATTTAGGACAAGTTGCTAGAGAAACATG 640510 36 100.0 31 .................................... TATGCTTGACGATTCAGTAACTGCTGAAGAG 640577 36 100.0 30 .................................... TCCTAATAAGGTTTAGTACCTTGTTTCCTC 640643 36 100.0 30 .................................... GGAGAGAAACGTTTGAAGAATATGAAAGCC 640709 36 100.0 30 .................................... ATATAAATATCAAATCTCAATACACTTGCG 640775 36 100.0 30 .................................... CTCCAGTTCGATTTCAAACTTTTAAAGACG 640841 36 100.0 30 .................................... AGCTAATTACTGCTGCCAACGTGGATACCT 640907 36 100.0 31 .................................... CTGTGGAAATCAATAAAATTTAATGCACAGA 640974 36 100.0 29 .................................... CGTATCGAAAACGGCGATAATCCAACAGT 641039 36 100.0 31 .................................... CAATACCTTTTTTTAATTCATCTTGATAAGT 641106 36 100.0 30 .................................... TTAAGAACAATATCATCAATACGACTTTCA 641172 36 100.0 30 .................................... CATCTATCAAATTCAAATTCGGATAAACTA 641238 36 100.0 30 .................................... GACTTATCTTGGAAGGTAGTGAAGGCACTT 641304 36 100.0 30 .................................... CTGTAATCATTTTTAAATCAGGATTATCAA 641370 36 100.0 30 .................................... TCCTAATAAGGTTTAGTACCTTGTTTCCTC 641436 36 100.0 30 .................................... GGAGAGAAACGTTTGAAGAATATGAAAGCC 641502 36 100.0 30 .................................... ATATAAATATCAAATCTCAATACACTTGCG 641568 36 100.0 30 .................................... CTCCAGTTCGATTTCAAACTTTTAAAGACG 641634 36 100.0 30 .................................... AGCTAATTACTGCTGCCAACGTGGATACCT 641700 36 100.0 31 .................................... CTGTGGAAATCAATAAAATTTAATGCACAGA 641767 36 100.0 30 .................................... GACTTATCTTGGAAGGTAGTGAAGGCACTT 641833 36 100.0 30 .................................... TCCTTGCCATCTGCACTGTAAGCCCAAGCA 641899 36 100.0 30 .................................... TGAGAGTGTCTGATGGATTTATTGGTAACC 641965 36 100.0 29 .................................... ACCTCATACATGGGGAAAACTTGTAAGTA 642030 36 100.0 30 .................................... TATTTCACGAATTTCTACACTTTTCAACCT 642096 36 100.0 30 .................................... CTGAAACCTTGTTTTGAAGCGCTTGGAAGT 642162 36 100.0 30 .................................... CATTAGAGGATAAGCATACTGCTTGATAGT 642228 36 100.0 30 .................................... GTCAATTGATACTGCAATCTCTTTAACATT 642294 36 100.0 31 .................................... ACTTCAATATGGTCAACATCTTGATCACCGA 642361 36 100.0 30 .................................... TAATATGTCGCTCTACTGATTCCAAAACGG 642427 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAACATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATGTTCTCAGACACCTGATAAGGAACTATTACAGAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACATCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGATGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //