Array 1 240569-234881 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIH01000001.1 Xanthomonas translucens pv. translucens strain UPB886 000000F_arrow, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 240568 31 100.0 35 ............................... CCGCTAAACGACACATAGGCCCTATCCACGTAGCT 240502 31 100.0 34 ............................... ACCACAGACGGCGAATTCTTCGCCCTCGTCGATG 240437 31 100.0 36 ............................... TTGAGTTCGATGGCGGCCCAATCGGCCGGGTTCAGC 240370 31 100.0 36 ............................... TGGTTGTCGTCCACCAGACGAAGCGTATCCGCAAAG 240303 31 100.0 34 ............................... CTCACGGAGGCGCAGCTTAGGGTTATCGAAAACC 240238 31 100.0 35 ............................... GTAGTAGTCGTTTGCGGATATGCTCCGCGCCCGGT 240172 31 100.0 35 ............................... ACGTCGCCCAGGGTAGAGGCTCCCCGATCACCGAG 240106 31 100.0 35 ............................... TTTGTGCGCCAAGCCGTCGGAATTGGCACGCTCGG 240040 31 100.0 34 ............................... TTGATGCGCCCCTCGCTGAAGGCGATTACCGCCT 239975 31 100.0 34 ............................... GCGGAATGGCTGGTCGAGCTGGCGCGCCGCTGCG 239910 31 100.0 34 ............................... TACGATGAAATGCAGGCAGTGGCGGTCGAACTGA 239845 31 100.0 36 ............................... ACGTGCGCGATGACCGCAACCCACGCATTGCGCAGC 239778 31 100.0 34 ............................... CTAAGCTTCTCGTCGCTGCACAACTACATGGCGG 239713 31 100.0 36 ............................... ACCCTGACGCCGTGGCTGGTCCGAATCGAGCAAGGT 239646 31 100.0 34 ............................... GTTCCGAGAGCACTCGCGTCCCGTCAGGCAACAC 239581 31 100.0 36 ............................... ATGGACGTGTTGGCGATCGTAGAGGCTGCGGCCTTG 239514 31 100.0 34 ............................... CGTACTTGACTCGGCAGCGCGAGCCTGCAGCGTC 239449 31 100.0 35 ............................... TATGATCGCCTTTACAGGGTCGTCGGCCAGCTTGA 239383 31 100.0 33 ............................... ACCCAGGCGCAAGCGCTGAAGCTGGTGTCGGCG 239319 31 100.0 35 ............................... GCGCGCAGCACAACCGGCTCGCCCTTGGCGTCGGT 239253 31 100.0 35 ............................... GGGTGCGCGCTGCGGCAGTTTGGCGCGCTGCGGCG 239187 31 100.0 34 ............................... TTGGGTGTGTCGGTCATGGTTGGGCCTCTGGAAG 239122 31 100.0 35 ............................... TCTCGGTTGCTGGGGTGTTGTCGCGACAGTACCCG 239056 31 100.0 35 ............................... AGCTAGTGCCGCATAGCGCAGCGCTATGCCCGACA 238990 31 100.0 35 ............................... TTACCACCGTCACCCGTCTTGGCTGCCTCGTACTG 238924 31 100.0 34 ............................... GGGTGCGGGCTTCGGCGGTTTGGCGGGCGGCGGC 238859 31 100.0 35 ............................... CTGTGCCGCGGGCATCATGCTAACGGCCCTGGCCC 238793 31 100.0 35 ............................... AGTTTCCACCCTTGGCTAACCGAGACGATCCTCTC 238727 31 100.0 34 ............................... AGCTACTGCCGCCTGCAGCTGCGCCATGCCCGAC 238662 31 100.0 36 ............................... CTCCTCCTTCCCTGAGTGGTGTGAGCGTTTTCTACA 238595 31 100.0 35 ............................... CCGTAATGTCGCCCGCAGCCGCGCCCACAGGGTTC 238529 31 100.0 34 ............................... AAGTACCTCTGTGCGCTCGACAACCATTGCAAAC 238464 31 100.0 34 ............................... CTGGAAGTGCTGGAAGCGCGCACCGACCGCCTGG 238399 31 100.0 36 ............................... ATCATTGCTGTCTACGGTGGCGTACTCAACACGTTC 238332 31 100.0 35 ............................... ACACAGGTTCGACGGGCCTTTGGGCGGCGCCGACC 238266 31 100.0 35 ............................... CAAGAGGAGCAGGAGCGCAAGGCCAAGAAGGGTCC 238200 31 100.0 34 ............................... CTTTGCCTGGCTCTGGTCGATGCCCTTCTCGGCC 238135 31 100.0 35 ............................... TCGGATACCCTGAGCACACGCTCGGGTGAGATGGT 238069 31 100.0 34 ............................... ATCTAAACAAAGAGGAATTCCGATGACGGACAGA 238004 31 100.0 34 ............................... GAGGTAACCGGCCCGTACGATAAGGCGCGGATTT 237939 31 100.0 34 ............................... CTCATTAGCTCTGTCATTGCCACCGATTCCAACA 237874 31 100.0 35 ............................... GCGAAACATTGCGCTGGTGTTAGCACGCTTGCCGG 237808 31 100.0 34 ............................... CTCCAAGCGCTGGCGAGGCGTGCCGACATCCATA 237743 31 100.0 34 ............................... CCTACCACGCTGCCCAACGACAGCGCAGAGCGCA 237678 31 100.0 35 ............................... TGGTCCTTCATCCCGTCGATGACCTGGCCCAGGTT 237612 31 100.0 33 ............................... TGCCGCGAGCGAGCCGATCGACGCCCTTATAGC 237548 31 100.0 35 ............................... TGCCCGAAGGTGACGCGCGAATCGTATGCGCCGAT 237482 31 100.0 36 ............................... ACCGCAGCGCCGGCATTGGTGACCGGTGATGCGGCC 237415 31 100.0 36 ............................... GCGTAGTGGTCTCCGCCCGCAGGCGAAGGTCGCCGG 237348 31 100.0 35 ............................... CAGCGCGTCCCTGCCCAGCGCTGAGGACTTTACGG 237282 31 100.0 34 ............................... AGGGGTGCGAAGCTCCTGCACCTTGATCGGGGTG 237217 31 100.0 35 ............................... AGGTTAAAGCCAACCAGCACGCTAGTGCCCTCCAG 237151 31 100.0 34 ............................... TTCGCCTGGCTCTGGTCGATGCCCTTCTCGGCGA 237086 31 100.0 34 ............................... ATAAATATGTTGGGAGTGTCTCTTGACGCGGTTG 237021 31 100.0 34 ............................... AAGGAAGATGGGCAGATTCCGTTGGTCCTGGCAG 236956 31 100.0 35 ............................... GCCAATGGCCTGCAGGTCGCCACCCGCATGTTTGG 236890 31 100.0 35 ............................... ACCAAGGTGGAAACTGTTGATATGGACGCCTTCGT 236824 31 100.0 37 ............................... TTGTCCTTAAGCAGCAGGTGCGCACGGCAGTAATCAC 236756 31 100.0 35 ............................... CGTGAAAAAGCTCTACATTGCGCACGGTGACAATA 236690 31 100.0 34 ............................... ACTAAGACGGTGAGCGTGATGGACCTGCGCACCA 236625 31 100.0 36 ............................... GACTTAGCGAACTTCATGGCCTGGGTAGCCTTCGTC 236558 31 100.0 35 ............................... TCGGTGTTCAACGGCCGTCGCAACCTCGCTGAGGA 236492 31 100.0 35 ............................... ATCGCGTCCAACGGCACGCCGAACACTTCGACGCG 236426 31 100.0 35 ............................... TGGTCCTGCCTGTTGGCGATCGTCATCTGCTGGGC 236360 31 100.0 35 ............................... CATGAGGACCCGAGAAGTAGCGCCTACTGCCACCG 236294 31 100.0 33 ............................... TTCATGGGTTTCCCTCTGTGGGTTTCGTGGGCG 236230 31 100.0 34 ............................... CTGATTCGCCCGAAGCTTACCCTTACCACTCACG 236165 31 100.0 33 ............................... TCGCTCGGCTTGGGTCCGCTGGCACTGGCCGTC 236101 31 100.0 37 ............................... TTGAGCCCCACGATCGCCTCGGCGGTGCGTGTGAAAG 236033 31 100.0 35 ............................... TCCGGCGAGGACGCCGACGGCCTCGGCGACCGGGG 235967 31 100.0 35 ............................... TTGAGCCCGACCGCCTGCGCGGGGATTCTGCGCCG 235901 31 100.0 34 ............................... TCATCAAGCTGGCGGCAGAACTCGTTGTCGAAAT 235836 31 96.8 35 ..........T.................... CGCTGCCCGGTCGCCCTTAGCGCCGCCGTGTGGAG 235770 31 100.0 35 ............................... GTGGCCGCGCGGATGCCAGCCGCGAGCGGGTACAT 235704 31 100.0 35 ............................... AAATCTAGTTCACGCCGATGTGCCGGCGCTGCTGC 235638 31 100.0 34 ............................... AAAATCCCGCAGTTCGAACTGATTTACAGAAAGC 235573 31 100.0 35 ............................... CTGCTTGCTGAGCAGCTGCTCCCGGCCACGGTACC 235507 31 100.0 35 ............................... ATTGCTTTACGCTATCGGCGCGCACAGCACGCGAG 235441 31 100.0 35 ............................... CCACCGGCCAAGGCTGGAAGTCCGTATTTGGCACG 235375 31 100.0 36 ............................... TTGAGTTTCAGCTCTGCATCGACGGCCCGGATGCGG 235308 31 96.8 36 ....................C.......... CGCACGTTCGACGGCCCCAGGTGGAGGAACGCCCCG 235241 31 100.0 34 ............................... CAGTTCTCGTGCCCGGCACCGCCAGGCTTCTTGC 235176 31 100.0 34 ............................... TGGAACAGCGAGAAGCACCACACTCGCATGAGGC 235111 31 96.8 34 ............G.................. AACCGTAGGTTGACTGGTTGGCCTGCCAAATAAA 235046 31 100.0 36 ............................... AGGAGGCGCTGTCGTCCACGATCCGCACCGCCAAGA 234979 31 87.1 33 ..............AT....C..G....... ATGTATTTGTTCGAAGAACATGTTCTTGCCGGT 234915 31 93.5 0 ...............C.........C..... | G,G,G,T [234885,234905,234907,234911] ========== ====== ====== ====== =============================== ===================================== ================== 87 31 99.7 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAACCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAAACAAGTCATTGATTTACAAGAAAAAAACCAACCTCTTCCGCTCACTACAGGTCCGCGGCAGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCTTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACCGTTCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGTTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACAGCGGTGTTGGTGGAGGAACCCTCGGTCTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAACGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //