Array 1 1026906-1021519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009501.1 Methanosarcina thermophila TM-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1026905 37 100.0 35 ..................................... CTCTTCACCCCGGTTTAAGTGCAAATTCTAACCGA 1026833 37 100.0 37 ..................................... TTTCCTATATTATTATAGGTGTTTATATTTTTTTACA 1026759 37 100.0 35 ..................................... CCTGCATGACCATACTTTGAAAAACAGGATATACT 1026687 37 100.0 35 ..................................... ATATCATTTTCTTTTCCTCCGAATTAGTTCTTTTT 1026615 37 100.0 37 ..................................... GAGGAGTCTATTGAAGGTTCACTTACTAAATTTTTAA 1026541 37 100.0 37 ..................................... CATATTCGCCTTCGGGAGATTATGCCGTTGCAAACAT 1026467 37 100.0 37 ..................................... TGGCTTCACGCTCGGCTGTGCTGCCTTTTTCCGTGAT 1026393 37 100.0 36 ..................................... TTGCGGATATTTTCCAGAGTCGGATGAGTGCGAGGA 1026320 37 100.0 37 ..................................... CGACGGCCTCACGCGAAATGAACGTGTGATATCCCTA 1026246 37 100.0 36 ..................................... TATTCCTTCTGATTGTATCCACACATATAATATCCG 1026173 37 100.0 36 ..................................... TAGATTACGTATGTGGCATATCATGCGCTCTGTGAC 1026100 37 100.0 35 ..................................... AAAGGTAGCCGTTTGAAAACTCACCAATGATTCAA 1026028 37 100.0 39 ..................................... TATAGTAATAGGTTGTATAGTATATTGTACAACCTAAGA 1025952 37 100.0 36 ..................................... CGGCTCGGATGAATATCTCAGCTGACATCCTAGTCT 1025879 37 100.0 38 ..................................... TTTTTACTCCCTCGAAGGATAACTCCTGTAGCCTCTCA 1025804 37 100.0 35 ..................................... TACTTATTCGACCCTGTTAAACATCTACAACGCCT 1025732 37 100.0 36 ..................................... TCCCTCAAAATATCCTGTTATAAATCCAAATCATCA 1025659 37 100.0 38 ..................................... ATGTTTATTACACAGAGGTCTATTCCTCGGTTCTCGGC 1025584 37 100.0 38 ..................................... TTTTTCAAAAATACCCCGTACACCCCGTACAAATAAAG 1025509 37 100.0 36 ..................................... GTTTTGCCCTTCAGAACTAAATTATCCGAGTTAATT 1025436 37 100.0 36 ..................................... CCGGAAAATCTACGAAGAGCGTGGTTTCTTCATCCC 1025363 37 100.0 38 ..................................... TGCTCCACAAGTCCAGCGACCGAGCAGCTTTCCCCATC 1025288 37 100.0 37 ..................................... TCTATAGACATTGAGGACAGAACATGACGACATACCA 1025214 37 100.0 36 ..................................... TGGTCAATAAAAAGACTATTGATTGGGGTACTATTT 1025141 37 100.0 35 ..................................... TTTGCCGAAAGGACCGTATGCCGAGCTATTGACAG 1025069 37 100.0 37 ..................................... GCAAATGGTACGAAATTTTCAGATGTGTATGGGACAG 1024995 37 100.0 35 ..................................... TTTGTTTTAGCCTTTCCCTGATTACCTCGTTATAC 1024923 37 100.0 35 ..................................... CTGCTCCTGCTGCAGCTCCACCTGCAACCATTAAC 1024851 37 100.0 39 ..................................... TCACTCAGAACTCCAGCATTCTCCATCTCTGCATTAAGA 1024775 37 100.0 35 ..................................... TTATGTCAACTACCCCACGATGAACCTTGAACGAC 1024703 37 100.0 37 ..................................... TATCTTCAGCCCCAACCCTCCCAGACAGCTTAAGCAC 1024629 37 100.0 37 ..................................... CCAAAACGAGCAGAACAGCGTACAGAAGAATATCCAT 1024555 37 100.0 37 ..................................... AATTCATCGAGGTCCTGGACGTCCTGGGGATTGACTA 1024481 37 100.0 37 ..................................... CAGAGCTGGAAACTGGGATTTTGCAAACTGGTATAAA 1024407 37 100.0 34 ..................................... AGGTAAATATTTCTCGCCTTCTTAGATAAAATAT 1024336 37 100.0 36 ..................................... TTCATTATTGTTTCCCTCAATTTTTTTGTTGATTAG 1024263 37 100.0 35 ..................................... TAGCTGCCTGAATCTCAACCTCGTCATTTATCCCA 1024191 37 100.0 35 ..................................... TAAAGATGGCACTACTCAAGAGGTATTTTTTGATG 1024119 37 100.0 35 ..................................... CATGAGGAATTCTCTCGATGAAAACGGGAAAAAAA 1024047 37 100.0 40 ..................................... CGCTTTTCCCTTTCAGACAGTACATTTTATCATACACTGG 1023970 37 100.0 36 ..................................... ACTGAGATTGAGAGAGCAGAGAAGACAAGATTAAAG 1023897 37 100.0 37 ..................................... AGTAGAGATTGAAGGCCGCCAACCTTCAACCCCCGGA 1023823 37 100.0 35 ..................................... CAAGTATTCAAAAACGAAAATTCGGTAGCGGTTGA 1023751 37 100.0 35 ..................................... TATAAATGGGTCATTCGATCCTGAAAAATTGACGG 1023679 37 100.0 36 ..................................... TGTGTATCATAATTCGACATTCGACATTTCCACCTC 1023606 37 100.0 38 ..................................... CAGTGTTCTTTTGCGTAGGCAGTCAACTGTTTTAATAT 1023531 37 100.0 35 ..................................... TAGGCTTTGGGCTTTACTACAAAACTTTAATCTTG 1023459 37 100.0 37 ..................................... TTGATATTCCCGAAATCGTCAAAACTGATATAAAACT 1023385 37 100.0 37 ..................................... ATCGTAGTGCAGCCAGGATGAGAATTACATCCAGCTC 1023311 37 100.0 36 ..................................... GCGTACAGTTCTTTCCACAAAAGCATCTGACGATCC 1023238 37 100.0 36 ..................................... CAGTACCGTAAATAAAGGTAATCTTGTCGTCGATTG 1023165 37 100.0 35 ..................................... GTTCTTCTCTGACATTCAAAATCTTTTCGACTGCT 1023093 37 100.0 37 ..................................... ATATCTTCTTTGTATCCATTGGCAAGACATCAAGCCC 1023019 37 100.0 37 ..................................... CACTGAAGAATCCAAGCGGGAAGGTAATTTCAACCAT 1022945 37 100.0 38 ..................................... TGCTGCGGTTCCTATACCGTTCCTCCGCTTGCATAATT 1022870 37 100.0 36 ..................................... ATGGCTCGTATAGATAACCTTCCAGCAGTTCCTTTT 1022797 37 100.0 36 ..................................... CAATTTGGACAAGAACTTACCTGTTTCTCGTTAGAA 1022724 37 100.0 36 ..................................... TCTCCTGGGAGTGCAGAGGGCACAGCGGGAAGACCA 1022651 37 100.0 36 ..................................... TTTCCTTTTTCATCTCTTCGTACTCATCCAATACTT 1022578 37 100.0 36 ..................................... CGCCTATGTACAGCTGAGCGTTCGTACCGGATACTT 1022505 37 100.0 37 ..................................... CTTTCAAGGACAATCGACTGCACCCGCGTACAATATC 1022431 37 100.0 37 ..................................... TATACCTTCTCCACAGTTGCGTTCTTTTTTGTCTGAA 1022357 37 100.0 37 ..................................... AGTCGGGGAGTTCAGTTATAAGCCTGATTAAATTAAG 1022283 37 100.0 35 ..................................... CGTTAGATCAAACGAAAAAAATAAAATCAAAATGG 1022211 37 100.0 35 ..................................... TAGTCATACCATCCTCGACCATGTCCGGTGAGAAC 1022139 37 100.0 38 ..................................... CGGGTGAAAGACCTATCAGGGATGAACTGAAGAATTCT 1022064 37 100.0 37 ..................................... AATTCTACAAACGTTTCGTGATCCTCGGCATTTACGA 1021990 37 100.0 34 ..................................... TTACAAGTGAGTGGTTAGGCAATCCCATCTACAT 1021919 37 100.0 35 ..................................... TCTTTCGTCTCAGGTCTCTTTCAGGGTGGGGAAAC 1021847 37 100.0 35 ..................................... TCTTTCGTCTCAGGTCTCTTTCAGGGTGGGGAAAC 1021775 37 100.0 36 ..................................... TGGATGTGGGGATAACCGTTTAGCATGGGTAGGCGG 1021702 37 100.0 37 ..................................... CGTTTAAAGACTCCTGCCCGGCTCCTGTTGTCTTCGA 1021628 37 100.0 36 ..................................... ATATTCCATCCAAAGCAACCGGTGAACCGTACGCTT 1021555 37 89.2 0 .................................GGGT | ========== ====== ====== ====== ===================================== ======================================== ================== 74 37 99.9 36 ATTCGAATGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TAACTTGATACTATTTTATACACAGTAGTATATTAAATTTTTGACACAAAAATTTACACAGTTCTGGGAAAAAATCGCAGAGATCAACAAAAGGACGAAAGAAATTTGATAGCTTGTTAATATTGAAAAAACAGCAGCGCAGGGGTATGCCGTGAATGTAAATTCGCTAAAGATTTTTGTATGTGAAGTGGTAAGTTAAGCTATAATTTTAAAAAAGAGTAAAAAATATTCGATTTTATACAAATACCGTTATAAGCTTAAACAATAATCTTCTGGCTGCAGACTTAGGAAATTGACTTGTGCTGTAGAAAATATTGCTGGTTAAAGAATAAACCAAGATTTTAATAAGTAGAATAGCATATACATAATAGCCAAAAACCATGAAAGCATTATATTTCTTGTATTTATAAAGGGTTTGATAATATCCCAACAAGAAATTTAGTTTTAATATAGGACCAATTTCAGGCTTTTTCTAGCCAAATAAAAGAAAATTTTCCCCT # Right flank : AATTTTGTGCAGGAGTTTTTAGTCTGTACTTATCCAAATTCGCAGCAAAACAGTTCCATGAATTGTACTATCAAACTTAACATCTGCTAATATTTTTATATAAACTGGTTTATTTTAAACAAAAGTTGTCCGGTTATTGTAAGAAAGGACCGCATAATTTTATTTTTATCATAACTTTTATATAATACTATTATTATGTGTTCTTAGAGACTCGCATAATAAAAATGGATAGGAAAAATGATAGAAACTATTTGGATAATCGTACCTAACTTAATAGCATCATACATGGTTATGGTCAATAAAGCGTATTATGCCAATATGATTTATTGCTTCGGTTATCTTTTATTTATCTGGCATAATTATAATTTGGGTGATAGTTCACAAATGATTTACTTTACAATTTTAGAAATAATGTCAATTGTCGGGGTCTTTTTATATTTATACCAAACTGGAAGAATCGTTGGAATTAATGTAAAAAAGAAAGAGCAGCAAGTGGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAATGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 2420382-2418131 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009501.1 Methanosarcina thermophila TM-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2420381 37 100.0 37 ..................................... CCGATTTTGCAGCTACCGTGATATAATCAGTTTTAGT 2420307 37 100.0 36 ..................................... TAACACTTTACACAGGAGGTGAACCGTGAAAAAAAG 2420234 37 100.0 36 ..................................... AGTTCTCGAAGCTCTTTTTTCACGGTTTGGATTGAC 2420161 37 100.0 36 ..................................... GTCATTAATTCCAGAGCATCACGTTTGTTTTGCAAG 2420088 37 100.0 35 ..................................... TGAAAGTTCCTGAATATTCGTACTCTTTCGTTGAT 2420016 37 100.0 37 ..................................... CAGATCATCCATGATGCACATCAGGCAGCAGTACAGG 2419942 37 100.0 36 ..................................... AGGCTGTTATGGAGGCTGAATAAATGCCTCTCACTG 2419869 37 100.0 37 ..................................... TACCTTTCAACTTAATGTATCTACAATTATCAGTTTT 2419795 37 100.0 39 ..................................... TATCATCTCTGCCTGGAAGAAGCTGCGAAGCGGGGCAGG 2419719 37 100.0 36 ..................................... TACTCAAGTCGCCGAAAATGATACCGTTATCCTGCC 2419646 37 100.0 38 ..................................... TCCTAATTTTAAGATTAATCCGTCCAAGCTGTCTGGTG 2419571 37 100.0 38 ..................................... CTGCCTGGTAAGTCTCATCCGCCGAATTCTTCATATCA 2419496 37 100.0 35 ..................................... GAGCTCCCTGAAGAAGTCGCACAAAAGTTTGAGAA 2419424 37 100.0 36 ..................................... TAAACGGCTTCTAGATGATACTACAAAGAAGAATAA 2419351 37 100.0 37 ..................................... TATTCAGCAAGTAAATTGAGAGATGTTATATTATGGT 2419277 37 100.0 38 ..................................... AATATTAGGGATGCCTAATTAACGGTTAGGTTCTCTGA 2419202 37 100.0 38 ..................................... GTTAAGATCGGCTGCGGTAAGTGTCTTAAAATCTTCTG 2419127 37 100.0 37 ..................................... CACATGGTTACACTTCTACCGATAGCGAAAAGGATTT 2419053 37 100.0 39 ..................................... TTTGCTTCGTTGTCGTTGCAGATATAGACCCGTTTAAGG 2418977 37 100.0 37 ..................................... CTGTGTGAAAGTGTCCGTTCCTGAATTCTACCGATAC 2418903 37 100.0 38 ..................................... ATCCTCAGGACCCCAGCCGAGTACACACGCCCATTCAG 2418828 37 100.0 35 ..................................... ATATTAAGAAATTAGACTGATAACGATCTCAAGGG 2418756 37 100.0 35 ..................................... ACCGAATAAATAACCATCTCGGTGTGGAAGTCTGT 2418684 37 100.0 36 ..................................... TCATTTGTGAAGCGAGAACAGTAGCATCATTATACG 2418611 37 100.0 36 ..................................... CTGTTTGACCGATTTTAAAACTCATCTTTTTTGGCT 2418538 37 100.0 37 ..................................... CATAGTCAAACATTGAGTTGTACAGGTTTACATTTCT 2418464 37 100.0 36 ..................................... CATGTCCGCCGCCAATCTCCGTAAGAAGGCCAGTTT 2418391 37 100.0 37 ..................................... GAAATAAACGTCATTGCTGTAACGAGAGCACCTTCTG 2418317 37 100.0 38 ..................................... TTCTTGTAATCGTCTTTGGTGGTCTCGCCTGGGAATAT 2418242 37 100.0 38 ..................................... CGCATGAAAAATAAATAGACGAGTGCTGGCAGTTTGAT 2418167 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ======================================= ================== 31 37 99.9 37 ATTCGAATGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AAAATCAAGCAGTAAAAAGGCATTGTTCAGTAAATTGTTATTGTTTTAGGTGTAGTTGAACACCCCTTTCCCCATTTTTTAATCTTCTGCTATTATCAGCCTTCTTATCCCATTTTTAACCTACGAGCAAGGCTGCGAATCAAAAGATGCACAAAAAATCGAGATTTAGATCTGTTTTATTCAAAAACTCTTTTTAAGGCTCAATGAAATTTGGAGAAAGCCTAAGAGCAAGAAAGTTTAGTAACGGAGTTGTTTAAATATCATCGTCTTTGAAATGTTAAAAATTACTATATAAACTGTTCTTTGAATTTATCTAAGATGACTTTAGATACAAAAGTTTAATAAAAAGAAAGGCGTATACTGAGATATTTCCAAACCTCTAAAAAACGCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATATCCCAACAAGAAATTTAGTTTTAATATAGTAGTAATCTCAGGCTTTTTCTAGCCAAATAGAGGAAAAATTTCCCCT # Right flank : ATTTTACTTCGTAATGTTTTTGCATGGAGATATCATATTCGTGAACAAACCTATCAGATCTGTCAGATACTATATATTAATTGTCGAATGAAATAGAATTCAGGATAACCTTCTGAAAATAAGATCCTGTAATGTACCTGATATAGTCTAAGTATATTGTCAGATATAATATACACAAGCATGTAGGCTAATATAAGATACTTATAATCCTGAAGATTTATTCTTTACTTTTCTTATATAATTACACGTATAGGGGTTTAGCAGAGCTTATGCGATTGGATTTAAAATAATGGTTTTAGACCTTTAAATTATTAAATTTACATTAAAACCTTAATGTCTATGTGCTTGTTTTTGAGCTTCAATTGCATAAACTCTGTTTATAAAAAGGACAGACTATACAAATAATTGGAGGGGTATTAGAGTGAAGGAACGTGAAATACCAGGGCTTATAGAGCTGAAGATGGAATTTGAAAGCAAGCTGTCAGGCATAAAAGAGTACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAATGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 3029861-3033895 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009501.1 Methanosarcina thermophila TM-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3029861 37 100.0 39 ..................................... TGGGGTTGCCACTTGCTGGACCTGCTCCCTGCGCGAGAA 3029937 37 100.0 38 ..................................... CCTGGTCCTCTTCCTGGCTCCCACCCACGCTTGTGTTT 3030012 37 100.0 36 ..................................... GATAGTGAGCTTGTAAACGATCTCCACGAACTTGAA 3030085 37 100.0 38 ..................................... TGGATTGAAAGCCCGGAAGCCGCTTGAGTATAAGTATT 3030160 37 100.0 37 ..................................... CATCGTACCAGAGTTTGGCCGCCATCAATTCCCTTGC 3030234 37 100.0 36 ..................................... AATCTCTGCCGTCTGCTGTCATGCCTGGACGGTATG 3030307 37 100.0 37 ..................................... CTCAAACCTTACTAATCTAACACATGAAATCGTAACA 3030381 37 100.0 35 ..................................... TTGTTATAGCTGTCTGCATAGACTCAGGCATATTT 3030453 37 100.0 35 ..................................... TGATTCAAGTGTTTCACGGCTTTCTGTCCTCCGAA 3030525 37 100.0 37 ..................................... ATCGCAGCAGCCGACGGGATGGTCTCAAAGGCAGCAT 3030599 37 100.0 36 ..................................... ATTGTATCAGTAAGATGTGTACTAAGAGCAATGCAA 3030672 37 100.0 36 ..................................... CCCCCGTATATGCTTTCTCAAAAAGAGAGAGCGTAG 3030745 37 100.0 34 ..................................... ATATCGGCATTGCAGGCACGGATAAAGATCTTCT 3030816 37 100.0 34 ..................................... TAATAAGCAGTTTCAAAAATATACTAAATAAAAA 3030887 37 100.0 34 ..................................... CTGATCCAACGCTTGATATGAACTTTGAACGAGT 3030958 37 100.0 34 ..................................... TTAGAGTACGAAGGTCTTGATCTTGAGACTATAA 3031029 37 100.0 5 ..................................... CTGTA Deletion [3031071] 3031071 37 78.4 37 .A.GTT.C..CT.T....................... TTAGGGGAGTTGTTACAGGGGATTAATGATATTCCTG 3031145 37 100.0 35 ..................................... TTCGATTTCCGAAACTGATAAACTCATCTCAAAAG 3031217 37 100.0 38 ..................................... TCATAGGGACTCCCCATTCTGCAGCTTCCGGGCTAATG 3031292 37 100.0 35 ..................................... AACCTAGTGGGTTTGTATGTAAACAGATAAAAATC 3031364 37 100.0 37 ..................................... TTTGTGATGTCTTTGTGTGTGTTATTTAGTATCTCAA 3031438 37 100.0 36 ..................................... AGAGTTGGTATAAAGCAAAGAGAGTCAGGCAGATTT 3031511 37 100.0 38 ..................................... TCCCATGTTTCTTTTGTAATGTCTTCGACGTGATACGT 3031586 37 100.0 36 ..................................... GTCCAGGGTGGTTCTATTCGTCGCTTGTAGGGGCTC 3031659 37 100.0 35 ..................................... TCATCCAGTACCCATTCAGCTTTGGTTCCTTTTTT 3031731 37 100.0 37 ..................................... CGACAGCCTCACGCGAAATGAACGTGTGATATCCCTA 3031805 37 100.0 37 ..................................... CTTTCATGCTCAGTTCCTCCAAAAAGGTATTAGGCGT 3031879 37 100.0 35 ..................................... TTGAAGATAATGCAGATGAAATAGAAGAACTAACC 3031951 37 100.0 35 ..................................... AGGGTATTCCAGGTTGTTGAGAATATCTTTGTTTT 3032023 37 100.0 37 ..................................... ATAGTGACACGGTGGATACCGTAAAGGGAAATGACAG 3032097 37 100.0 34 ..................................... TTCTAAGGCTTTTTGAGCGCATTTCTCGACAAGT 3032168 37 100.0 37 ..................................... ACCCCTGAGAGCTGCACGGTCCTGAGCATAAACGAGG 3032242 37 100.0 36 ..................................... TAGTCGTAGGTGCGTTTGATTCTGTCAAAATTAATA 3032315 37 100.0 38 ..................................... ACAGGTTCTCCATCGGCTCAGCCATCGTATTAATTACG 3032390 37 100.0 34 ..................................... ATGATTGCGGTCTTGCCACACCCCGGGCCGCCGA 3032461 37 100.0 35 ..................................... TTCTGGGATAAAATTAAACAGTGGTCACTGGTAAG 3032533 37 100.0 37 ..................................... TCTCAATTTCTTCGAAATTTGCAGCCCGCATCGCTGG 3032607 37 100.0 37 ..................................... TGCTTAGTCATGCACTCATCTATAATGTCAATAAGAT 3032681 37 100.0 36 ..................................... TTTGTGAAGTGTATGTTATGGATTCGCCCTACTTGG 3032754 37 100.0 37 ..................................... GGCTGGATTACCCACCACTCACCGCCGCCGTATATAT 3032828 37 100.0 36 ..................................... TCAACCCGTCCGCAATCCATACCGGGAACTTTCCAG 3032901 37 100.0 36 ..................................... TTGTCATTCCGAAAGAGCAAACGATGCAGGGTCTAA 3032974 37 100.0 37 ..................................... CCGTTCCATTCACGGCAACGCATACGGCAACTGACGG 3033048 37 100.0 39 ..................................... CTCAGAAAAGAAGCATTCCTAGCCGACCCCATGATAAGC 3033124 37 100.0 36 ..................................... CTCCTGATTTCAGAATAACTGGAGATGTAAGTACGT 3033197 37 100.0 37 ..................................... TACTGCTTGCCTATCATATCCTCTTCGAGAAACTCAG 3033271 37 100.0 36 ..................................... CACTTTCCTCCATACACTTTCCTCCATAACGAAAAA 3033344 37 100.0 35 ..................................... AAATTTCGTTCTGGACCTTCAGAGCCTGGATAAGT 3033416 37 100.0 35 ..................................... CTCCGTTTGCTCAGAACTACCCGATATATCAGCCT 3033488 37 100.0 37 ..................................... CTTATTTCCACATATTCAAAACTTTTTCAGTAGCATC 3033562 37 100.0 36 ..................................... CGATTTCATGTTTTAAATTGGTAAAAAATGCGTATT 3033635 37 100.0 39 ..................................... TCGAACTATACCCCTCCGGGTATTCTGGTAAGTTTAACA 3033711 37 100.0 36 ..................................... CTGTCCTGCGGTACTCATCATTGACATAAAACTCGA 3033784 37 100.0 38 ..................................... TTCCAGTCTCCTCTTACTATGGGAAAGGCAGCAGGTAC 3033859 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 56 37 99.6 36 ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : GAAAGCAATGTTTTTATTGCCTCAAAAAAACGCCATATAAAAGGAATTGTTGATGAAGTCCTGTTTCTGGAAGACGGAACCGCCGCTCCCCTTGAATACAAATTTGCCGAATACAAAGAGAAGGTCTTTAAAACCTATAAGTTTCAACTCGTCTTGCAGGCGCTTCTGATCCGGGAAAACTACAATATTGAAGTTAATCGCGCATATATTTGTTTTACACGCAGCAACAGCCTTGTCAAAGAAATAGAAATCACAACCTCTGATTTCAAAAAAGCCGAAAAGATTATACAGGAAATCCTTGATATAATTCAAAAAGGCTTATATCCAAAGACCTCTAGATCTTCTAGAAAGTGCGTAGATTGCTGTTACCGTAATATCTGCGTATGAAGAGGTTTTTCTTGTATTTATAAAGGGTTTGATAATATCCCAACAAGAAATTTAGTTTTAATATAGGGCTAATCTCAGGCTTTTTCTAGCCAAATAACGGAAAATTTTGCCCT # Right flank : CCTAAGTAGGTTATTGATATTTGTTTTATTGTCATTACTTGCCGCAGAATATTCAAAAAAACAAAACCGTTAGGAATCATATTATCAAAACTTATACCATGTCTTCTTTTTTCATTTTTCGGCGGTATGCTTCCTTACATGCTCCAGAGCAATAGTTAAAATCAGACCTTAGAGGGATTGAAACTTGGGTCTATTTAGCTGAAGAAGGAACATATGTAAGGAAATAAAAATAGCAAATAATATATTAAAATAAAAATAATATCAATAATAATAACAAATCATGGGGGGTCTCGATTATAAGCACAGCAGAACTTATACTGGTCATATTAGTAATTCTTCTTTTTATTCTTATAATGACGCGGATATACAAGCTTATCAAACATCAGAAAGAATAAGTAAAACCGATAAATTATTTAGGAATGAAGAAAATATAGATTTCAAGAGTTCCACAGGCTCTATAGGAAACACACCTTTACAAAATCCTCTAAATTCTTCCTGCA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA //