Array 1 482622-488046 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSRS01000002.1 Bifidobacterium bifidum strain TF07-22 TF07-22.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================================= ================== 482622 33 100.0 34 ................................. ATCGAAAAACCGCATAAGCACGCGAAACTCACTT 482689 33 100.0 34 ................................. AGGTGCTCCAATAGTATCACGTCGATATCCACGT 482756 33 100.0 33 ................................. ACCGTAAAATAGTGTGTAGCGTCGTGACATGCT 482822 33 100.0 34 ................................. TGCTGTCGGCTGGTTTGCAGTGCGGCGAATAGTT 482889 33 100.0 35 ................................. AGGAAATTGCCGTCAAGTGGATTAAGGCGCATGGA 482957 33 100.0 33 ................................. GCCTACTACCCGCACATCGCTTCGGGCATAGGC 483023 33 100.0 34 ................................. TTCATGAAGCTCTTCACGAATATCATCATCCATA 483090 33 100.0 34 ................................. AGGGGTGCCCGGTGGCAGTGGGACGCTTACGCGG 483157 33 100.0 34 ................................. ATCACACACGATTACGGCGCACAGTCAACCCTTA 483224 33 100.0 33 ................................. AGGGTGGCCGCGATCTTTGACACTGAGACGACT 483290 33 100.0 33 ................................. ACGACCGACGCGGGCACCTCCATTAAGGTGGTC 483356 33 100.0 33 ................................. TGATAATCAACGGCAACGCCACCACCGCACTCA 483422 33 100.0 34 ................................. CGTGTCGTCCTGGAAGACGACGTCGAAGTCGCCG 483489 33 100.0 33 ................................. AGCTCGAATGCTGCATCACTGTCGTCGCCGTGC 483555 33 100.0 34 ................................. AACGTTATGAAGTACCCCTCAATCCCGAGTATGG 483622 33 100.0 34 ................................. GATACTATCATGCAACGCAACGAGCAAGCGCTGC 483689 33 100.0 35 ................................. TATCTGTGTACCTTTGTTGGTAATGGTTATTTTCC 483757 33 100.0 33 ................................. AAAATGGAAATGCATATAGCATCCAAGGGTATG 483823 33 100.0 34 ................................. ATCGGGTCAAACAGGTATCGCATGGTGTTAGCGA 483890 33 100.0 37 ................................. AAAACCACCACCAACGAGAGTATCGCCGGGCTGCAAG 483960 33 100.0 33 ................................. CACGGTGCGTAGCCATGTGAGCGCCCAACTGGT 484026 33 100.0 33 ................................. ATTGCGCAAATCATGGAAACGCCACGAAGCAGT 484092 33 100.0 34 ................................. TGTTCAGCGTATTTAGCGTCTTCAACATAATCGA 484159 33 100.0 35 ................................. GCGGTACCAGTGCGCCCGTCATGGTCAACGGTGTC 484227 33 100.0 35 ................................. AAAGACACTACATATCTGGTTTATTGTTGTGAATT 484295 33 100.0 35 ................................. AAAGACACTACATATCTGGTTTATTGTTGTGAATT 484363 33 100.0 35 ................................. AAAGACACTACATATCTGGTTTATTGTTGTGAATT 484431 33 100.0 34 ................................. GAGCTGGTGCAGTTTTTTGTCTATGAGTTGCATA 484498 33 100.0 34 ................................. TGGTAATCACCTTGGGCGGCGTAAGCGGCCAGTC 484565 33 100.0 35 ................................. ACTTGTCCAGCCTGACTAAGGGCGATAAAGAACCC 484633 33 100.0 34 ................................. CATGCCATCGTAGTCGGCCCAGAACAAGGCATGA 484700 33 100.0 35 ................................. CGGTATCGATTCGGGTATTTCGCCCGCGTACGCCG 484768 33 100.0 33 ................................. TGCATCGGTCGCGTTCTCGCGGCGATGGGCCGA 484834 33 100.0 36 ................................. AACGTCGATTTGGCCAAGGTGTCCTATCGCATCGTG 484903 33 100.0 36 ................................. ACCGTGGACAAGCCTGAGTCGGCTAACAGTTTGGCA 484972 33 100.0 34 ................................. CAGAAACCACGCGTTGCACGTTTTCGGTAGATTG 485039 33 100.0 34 ................................. AACGCGTATCTTGAACAGCATTATGCGGACTATG 485106 33 100.0 35 ................................. CGGTACGCGAAACCTATCAACGACAACGACAACGA 485174 33 100.0 35 ................................. TGCAATCATATTACGGCAGCACCGTTAAAGGGCAA 485242 33 100.0 33 ................................. CACACGCAATCATTGAGATACTGCCGATTCATC 485308 33 100.0 34 ................................. ATGGCGACGATGTTAAAAACACGATCACCGATAC 485375 33 100.0 34 ................................. ACGGTTTGCTGTTCGGGCGAGTTCCGCCTTGCTG 485442 33 100.0 35 ................................. GTCGCGGCGGTGTTGCTGCGTTGCGTGTTCGACAA 485510 33 100.0 32 ................................. CAGTAGAACGCCGGTATGGCGGGCGTGTACGG 485575 33 100.0 33 ................................. ATCAGCGTGACATCATTATCGCGGTCAGATGTT 485641 33 100.0 35 ................................. TTCATAGGTATGGTCGTTTTTCCACGCGCCCAGTT 485709 33 100.0 55 ................................. TCCGGGCAGGTTGGCGGTGCTGGTGCCTGTACCGTCATGCAAAACGTCCTACCCC 485797 33 100.0 36 ................................. AGGGGTTTATGAGCGTGGTGCAAAACATCATCGGTG 485866 33 100.0 37 ................................. ACCGGTCGCCGTCGCGGCCGACTCGCCCTCCTGCGCG 485936 33 100.0 33 ................................. CTCGTTGGGACGTTGGGCGCGGCGTGGGGGTGG 486002 33 100.0 33 ................................. AGGAGGCAAGGTGGTTATTGACAACCCGCCGTT 486068 33 100.0 33 ................................. CGGGCAGCATCAAGACACTGCTCGCCAACCTGA 486134 33 100.0 35 ................................. CGTACTATCACACAAAAATTCGACGAGATCAGCGA 486202 33 100.0 34 ................................. CGCATGTATCCCGAGTCGGTCATCACGGTGCGTC 486269 33 100.0 35 ................................. GTCAGGCGATCGCCACCCCGCCACTCACGAAAGGA 486337 33 100.0 32 ................................. TACGCGGCGCTGGTGAACCGCATCGGCGGCAC 486402 33 100.0 35 ................................. CCTTGAACGGTGTCCAGATGTTCCCCCGATATGAG 486470 33 100.0 33 ................................. GGAGAGAGGCAGCAGGCCTTAAGGGCGCGGGAC 486536 33 100.0 34 ................................. GATGGCCCGACCGGCAGGCAATCGGTAAGACGAT 486603 33 100.0 35 ................................. TCTGGATATACACAATATCACACGCGACGACGGCC 486671 33 100.0 34 ................................. CTCGCGCAGTGTGGCCATCTGTCTGAGCAGATTG 486738 33 100.0 33 ................................. CGGTAGTCTGTTTGCTATTTTCGGCACGCCGAA 486804 33 100.0 34 ................................. ACCGTGGACAAGCCTGAGTCGGCTAACAGTTTGG 486871 33 100.0 33 ................................. TTGCGGCGCTGGCGAAGGCGAACGAAACCGAAA 486937 33 100.0 34 ................................. AACCCGTCGATTATCGCATCCATTGCCGTAACTG 487004 33 100.0 36 ................................. ATCATTTGTGTGGGGGGGCATGAGTGCGGCGAGGGC 487073 33 100.0 34 ................................. ACGACGGCGAGGCGCAGCGGGGCGCACATGCTAG 487140 33 100.0 35 ................................. ACGTACTGCGCTGCGTTCTGCCCGCCCACGTTGCC 487208 33 100.0 34 ................................. ACCGCATTGCAGACGGCCGCGCAGTCGGTCGGCG 487275 33 97.0 34 ..................G.............. GATGCTGATGGTCGAGCAGTTTGATGCCGCATTG 487342 33 100.0 34 ................................. GATGCTGATGGTCGAGCAGTTTGATGCCGCATTG 487409 33 100.0 33 ................................. CTCCCCAATCGGGTGACGCTGGCTCCGTCCCGC 487475 33 100.0 35 ................................. ATCCCGTAGAACACCGCGAGTATCACTATCGGAAC 487543 33 100.0 33 ................................. CTCGCGAGGTCGGCGCGCATGGTCTCGGAGCGT 487609 33 100.0 34 ................................. GTCTCGAAATGGAGCCGGCCTTGGACGAACCGAA 487676 33 100.0 34 ................................. TGATTAGCAAAACGCAGATGACTGACATTGCCGC 487743 33 100.0 35 ................................. TCCCCGGTGGGCTCGGAGGCCAGCAACTCCGCCAG 487811 33 100.0 34 ................................. CAGTGGATTAAGCAATAACTACTGGTACAAACGC 487878 33 97.0 35 ........G........................ GCTAAGAGAAGGTGACTATCATGACCGGGAACCGA 487946 33 100.0 35 ................................. TGGTCTCCAATCGTGATCTCCACGTCGTCGAAAGA 488014 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================================= ================== 81 33 99.9 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : AATACGGTCAACGCGTGCAGAACAGCGTTTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATCTGGCGAAGATTATGGATGAGTCGCAAGACAGCCTGCGGTACTACAATCTTGGGGCGAAGTATTCTTCGAAGATTGAATATCGGGGAAGGCAGCGACATTTACCGGTCGATGGCGTGATGATGCTTTGACGCCGCATTGGCATGCGGCATTCGGCGGACTGGAGCGGTGTACGACGTGCGGAGATCGGCCGGTGCGAGCCTTGAGCTCTCATGAAGCACTGGGTCGTTCGCACCACGGTTCATGGCTTCTGAGGACGGTGTGTGTTCTTCTTGTCGTTTGATAACTCAAGAGTGAGTGATCTGCTGGCATATCGATTCAGCGGATTCGCATATCGGGGAAAATGCGGGTGAATCGTACGGTACAATTGATGCCGTGGAATGGGTGGAGTATCCATATTTTGAGATATGAAGTCCATTCTTGCG # Right flank : TGAAGCGCTGCTGAAGGAAGTCAAGGCCGTGATCGACAATCCGGACGCCACCGCGAAGGACGTCGCGCAGATGCTCAAGCGGATGACGGACTTCGAGTACGAGTATGCGACTCCTGATCCCGATCCTGACCCGGCCCCGGGTCCCGATCCCGACCCGGAACCGGACCCCGACACTCCCGGTACGGATGACCCGTCCAAGCCCGGAACCGGCGACACGGATACGGACAAGCCCGGCAACAAGCCCGGTGACGGAGCGGAAGACAGTGGCAAGACCAACGACAAACCCAAGCCTCCGCTGTCGGCGACCGGCGTGAACGTGACCGCGATATCGGTCGCGGTCATGGCGCTCGCCAGCGCTGCGACGGTGCTGCTGACCATCAAGCGCCGTAGGGGCTGAACATGACCGGTGCCGGAGAGTCCAATGCTCTCCGGCACCGTCATATGTCGAACTCCTGCATAGGGTACCTTAAATCAGCCTGATCTGATAGACTGTCTGCGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //