Array 1 888594-885713 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049232.1 Campylobacter concisus strain H9O-S2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 888593 30 100.0 37 .............................. AGCGAAAAGCAAATAATCGATAAAATCGACGAGCTAA 888526 30 100.0 37 .............................. ACATAACTGGTTCTGTTGATTATCATCCCAGCAAAGA 888459 30 100.0 35 .............................. CATACCACGCCGAAAGCTCATCGAAATCCTGCGTT 888394 30 100.0 34 .............................. ACAAGCTCGTGAGATTTTGGCTCGAAATAAAAAT 888330 30 100.0 37 .............................. ATGAGTAGATAAAATGCTTAGTTTAATCATTGGTCCG 888263 30 100.0 39 .............................. AATGCTTTTTGGTTTAGCAATTTTAAGAGTTGTGAGGAT 888194 30 100.0 38 .............................. GCGTTTGCAATATTGCCGTTGTTGTTTTCTAGCATATC 888126 30 100.0 37 .............................. AAAGATCATAAGCTTAGCTTTAAAGTAGTGCTTATGA 888059 30 96.7 36 ..................A........... CGCCCCTAAAGCTACCAAGCCTAAAAGCCCAAAACA 887993 30 100.0 37 .............................. TATAGGGGCTATCTTATTTTTGAGCTTTGTAGTTGGC 887926 30 100.0 36 .............................. GCCGCGGTGTTGCTTCTGGCTTGAAATTCTTTTTCA 887860 30 100.0 39 .............................. CGCCTTTGCCTCTTAGCCTATCTGCCTCGCAGTCTTCGC 887791 30 100.0 37 .............................. GATAAAGAAAAGCAATCGGCGTAAGCAGATGAAAAAG 887724 30 100.0 37 .............................. TTTATAGGCAAATTTAGAATATTTACTAAAGCACATT 887657 30 100.0 36 .............................. TAATCCTGGTTACTCTTGGGATCCTGATAAACCTAA 887591 30 100.0 35 .............................. CATTAGATTAATTAAGCTAATCAAGCGCAATTTAA 887526 30 100.0 35 .............................. TTTTCGCTATTTTCATAATACTTCTACAAGCTCAA 887461 30 100.0 36 .............................. AATTTGGAGAAACATCGGCTAATTTTTGTGGAGATT 887395 30 100.0 36 .............................. TTGTCTCTGGAGTTGGGAATATGAAGATACTAGAAA 887329 30 100.0 37 .............................. CGTCAATAGACGATGAAACTTCACCAGTTTTCTTGTC 887262 30 100.0 34 .............................. TATGCTTTGGAAGATTATACTTCACGCACCAACT 887198 30 100.0 36 .............................. AAGATTAAAGCGCGCTAATCAATAACTAAAAATAAA 887132 30 100.0 34 .............................. TATTTTCATTTTTTTTAGTATGATTATATTTTGA 887068 30 100.0 36 .............................. TCGTCAGATTTTGAGCGAGTTTTACAATTTTCAGCG 887002 30 100.0 38 .............................. TCTAAATCAAAGCGCAAACTTTGACGAAATAAAAAACA 886934 30 100.0 35 .............................. ACTCTCGGCGGTAAGAATTTGAGAGTAAAAACCCG 886869 30 100.0 37 .............................. ATACACGCAAGCGATTTTTTAGAAAATTACAATGAAG 886802 30 100.0 37 .............................. AACAGCAGGCGCAAAATCTTCGCACGTTTGGCGAAAA 886735 30 100.0 34 .............................. GATGATAGATTAGTTTCATTGCATAAAAATGTTA 886671 30 100.0 35 .............................. CCGAGACAGCGTAAGAAACAACTTCACAAAACAAA 886606 30 100.0 38 .............................. GTTTCAGAAAATAAATCAATAAATCAAAAAAAATCAAA 886538 30 100.0 36 .............................. ACTTCGTTTCGTCTTTGATTTGAAATAAAAGACGCA 886472 30 100.0 35 .............................. AATTTAGAATAATCACCATTTAAAGCACCCCTAAA 886407 30 100.0 37 .............................. GCCCTAGTCTTGATGTAGGAGGCAACAATGACAACGG 886340 30 100.0 36 .............................. ATGAGAAAGAGCTAAAGGTAGGGACGCCATACCCTA 886274 30 100.0 37 .............................. AGTTTCTCGTGTGTGCCTTTGTCGTTGTAGCTAACTG 886207 30 100.0 37 .............................. AAATATGGCTCGTCTTCTGCGTATCTTACACCTTCCA 886140 30 100.0 36 .............................. TTGTGCCTAATGGCAGCACGTATAAGGCTGATTTAA 886074 30 100.0 38 .............................. CTAAATAAGGCAGGTTTTTATTTTTGGGTCGCTGTCGT 886006 30 100.0 34 .............................. GCGTCAAATCTATACTAGCTCGCTCCTCTACGCC 885942 30 100.0 36 .............................. GTGTGACCGACAAGTGCTGTTTTTTGCATTGTAAGA 885876 30 100.0 36 .............................. TATCAAGGAGAGGAAATGAGCGAGATAGTAGCCCTA 885810 30 100.0 38 .............................. TGGATAAGCAGTTTGGCATTCCGCCTAACGCTTGGTAT 885742 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 44 30 99.9 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGTATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAAATTATCTCGCGCCTTTGTGAGACGCTCACGGTGGGTGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCCTATGAAGGCTTTGGGTCGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTGGGGCTTGGCGTATTTGCACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : CCACCAAACATGGTTGGCGATAACCGCAATCACTCTTTTGATAGTCGTTTTTTTGGGGCAGTTTCATACAAATTTTTAGTTGGTAAAGTTAGATGGCAGCTGTTTTAGCACAAATTAGCAAAAAACCTTGGCTAAAGATTATAATGAAGCAAATTATCGTATTAATGAAATTTAAAAAAAGTTGTGAAATTTTTTGTCAACTATAATTAAAACAAAAAATATATGAATTTCTAAAACCTACTTGTAAAAACAAGCAGGTTTTAAAATGTTTTATTTCTCTAGTTTTTCTTTAAGTTTTTCTTTTTTAGATTTAGCTTTTGAAGCAGCTTTTTCTTTCTTTTCTTTTACTTTGTCAACGACTTTGTCTTTTTCATCTTTTGCTTTTTCACTCATACTAGTTTCATCTTCTTTATTAGAAGTTAGCTCTTCTTTAGTTTTAGAAGCTTTCTTTTTAAATTTATCTTTTTTATCAGAGATTTTTTCTTTCATCTCGTCTTTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //