Array 1 9049-8626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDMP010000102.1 Clostridium neonatale strain Marseille-Q4564 NODE_102_length_12994_cov_5.293153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 9048 30 100.0 35 .............................. TTCTTTGGAATCTATTTTCTCCCTTTTCCATTGTT 8983 30 100.0 36 .............................. ATCTCGATAAAATATTTTCTTTTCCTGTATCTACCC 8917 30 100.0 34 .............................. TGTAAATTCCAATCTGCCATTTAATCATCTCCTA 8853 30 100.0 36 .............................. ATATATAATACAATTGCCTATTTAATTTTAGGTACT 8787 30 100.0 36 .............................. AAATGCTGAAGAAGTCTCTTTATTAAAAGAATATGC 8721 30 100.0 36 .............................. TGTGTATATCCCTTATCTATTGGATTATTAGTAGTA 8655 30 70.0 0 ......T.....T..A..TA.A..AA...C | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 95.7 36 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : TTTAGATCTGATAAATTTATTTGCGCCAAAAATGCCATTGCTTTTCCCTCATTATCCAAAGGATAATCTTCAATACATTCTAAATATGGACATCCTCCCAATTTACTATCCCAAGGTTTAGTCTCTTCAATTTTAAATGTTATTTCATTACTATACCTAGTATTCTCCATGATAATAGCTTCATGCTCTTTTAAAATCTCAGGAATCTCATATTTAATCATCCCATCAACCCTCCAAATGAATATTTATTTCTATGCTAATTATAACATATCTTGTAAATAAAACATTATCCATAATCTAAATAGACCTGCTCATTTCATTAATTATTTACCAGGCCATTTATTTACTTTTCGGTTTAAATTAGAGTGACAAAGCCACTTTAAGCACTTTCCTCTATTGCTTGCATCAATATATAATTTCGTTGGTAAATTTTTAAAGAATATGCTACTATAGTCATATACAGAGAATTGCTGAATTTAAAAATGGCTTATTTGCGTTGG # Right flank : TTTAGTTAAGTCACCCAAAGTTTTTATTCTACTTATATCCAGGTAAATACGTAATATTTTTGCCACTATCCTCAGATATAGTTAATTTAGACAATTACCAAGTAAAAACACCTAAAAACTAAATAAAACAATAATTAGATAAATCTAGTAATTTTACTTGATTGTATTTCTACAGACTCATATATTAAATCATTTTATTTATCTATTTTTGCATATTTTTTCAATATTGCACTGAATTTTATTAAATAATTAATTCCCCAAAAGATTAATATAAAAAACAATAGACATAAACTTGAATTATATTTATCCCAAAAATAAATTACTATAGATACAAGTATAGCATTTAAGCAACTAAAGAATAATTGCATTTTAAAAAATTTATCATTAACTATAATAAAATTCTTATCCTTTATTGTGTAAATAACTTTTTTATTAAAATAGTAAATAATATTATAAATAACAAATAATATTGGCATAATTACACCACATATAATAAATAG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1-223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDMP010000377.1 Clostridium neonatale strain Marseille-Q4564 NODE_377_length_4321_cov_4.080353, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1 24 100.0 42 ........................ TTCAACTATTAACATCCTCCCTCCCATGCAGCAACGGATTAA 67 24 100.0 42 ........................ GATATGAATAAATATCCTTCTGTTCTATCTCCAATAGATTAA 133 24 100.0 41 ........................ AATCCATTAGATTTCATATCTTTATCATCACAAACAATTAA 198 24 79.2 0 A...G....T.....A.......G | A,A [212,217] ========== ====== ====== ====== ======================== ========================================== ================== 4 24 94.8 42 GATTAACATGAGATGTATTTAAAT # Left flank : | # Right flank : GTATGAAAAATGGTAATAAATAAGCAGAGATAAAGAGCATAATATTCTTGATAAAATCAAATTTTAAACCTATTAACAGAAAGGAAAAACTGGCCATGCTAAATAAAATTGCGTTGATTGTTATAGATATGCAGAAGGATTATATTGGAGAAGAAAGCAGACATAATTACTATCCTAATACACTTATAGATAAGGTTAATGAAAGAATTGCCATAGCAAATAATAATGGACAAATGATTATATATGTTAAGAACAAGGGGAAGCGAAAAAAGGAAATATATATATCTGATTTTGTGAAAGGATTATCTATTGCTTCAAACTTTATTATAGAAAAAGGCAAAGCAAGTATGTTTGATGATGATATTTTCTTTGAATTGTTAAAAAATAAAGATATATGCAAAATAGAGACAATAGGAATTGATGGAAATTGTTGCGTTGCTTCTTCTGCCTTAGATGCAATGAAATTAGGCTTTTCAGTTATTTTTCCTTTAGAGTATATT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1857-2409 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDMP010000573.1 Clostridium neonatale strain Marseille-Q4564 NODE_573_length_2468_cov_3.269970, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1857 30 100.0 34 .............................. TTCCAGTTGCATATCCTCCAGCAGTAGCCATATG 1921 30 100.0 36 .............................. TTGGAGAACAGCGTTAAATTTAACGCAAGATGAAGT 1987 30 100.0 35 .............................. CTAAATCTAATATACTTTCAGCATCAAAACTTGCA 2052 30 100.0 36 .............................. TTGCATAAATCGGAGATAATTCTTTTACTTTCTCAA 2118 30 100.0 34 .............................. CCATCCAATTTGATGTAGCTCCTGCTAATATTTG 2182 30 100.0 36 .............................. GAGTTTTATTAGTTTAGCCTTAGAAAATGGATATTC 2248 30 100.0 37 .............................. ATACGAGAAGTAGAAAAAAATGAAGTGGTTCTTGACT 2315 30 100.0 35 .............................. CCATCCTCTCCATATCTTTTAAATTATTATGGTAT 2380 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 ATTTAAATACATCTCATGTTAATCTTAATC # Left flank : TACGCTTTGAATAATATTCAGGTATCTTATACGAATTGTGACACTCAATAACATTTTTAATTAACTCATCTTCACTTGTATCTTCAATGAATTCTCTTATTTTACCCTCTTCAAATAAAATCTCTACCCCAAGCCTAGCATGATCAATTGACTTAGAATCATTAAATGTTCCATATCTTCTTACCTGTTCAAATCTTCCTATATCATGTAACAGTCCAGTAAACCATGCAATATCAATTTCTTCATTTGTCATCTCTAAGCTTGGTGCTATTTTTTCACATAGTTCACTTACACGATATGTATGATCTATTTTTAATTTTATTTTTTCATTGCTGGTATCATACTTCTCAACATAATCATTAAATACTTTTTTAGATTTAATTTTGTCTATATACATCTTGCAGACTCCTTTATTTTTATAAAAAATCCTTTTGTATTATAAAACCATTAGTTTTATATTTTTAATATTTTACATAATAATTAGAAAGCTATTTAATCAT # Right flank : CTATCCGCATCTACTATCTCACCAGCAATATACAGATTTAAATACATCTCATGTTAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATCTTAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 1468-1629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDMP010000687.1 Clostridium neonatale strain Marseille-Q4564 NODE_687_length_1672_cov_4.480259, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1468 30 100.0 36 .............................. TAAGACAAGTTTAATTCTTCACGTCTTTTTTTAATT 1534 30 100.0 36 .............................. ATTCTATGATTCGCTACTTTTAATTTATCCTCCAAG 1600 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : ATTGAAGGATATTATTTAAATAGTAATGGTGCATGGACAACAAGTGTTCCAGCTCAAATACAAAATACTAGTGTAAATACACCCTCAACTATTGATAATAATGATGTTTCAAGTGTAGTTGTAAAGAATGCATCAGATACAGTTTATGTATCTAGCAAAGGAATATATCATAATACAGCAAATGCTCATGGAATGAAAAATTCAACAGCTATGAGCAGATCAAAAGCACAAGCAGCAGGATATAAAGCATGTGAAGCAAAACATTGCCCATAAAAATAAAAGCTTGTGAAATAATCATTGATGTTTTATTAAAGTATACATTGTATTTACCAAGCGATTTTAATTTATAATTAGGTAAAACACTGCAACAATAGTGACTTTATCTGAGTTCATTATAATAAAAATGAAAAAATAGAAAACACTTGGTAAATTTTTTGAAGAATAGCGTTATTTCTTGGATAGAAGAATTCTTTTATTTTTAGAATGGCTATTTTTCTAAG # Right flank : CTGTATATTGATGGTGAGATAGTAGAAGCGGATAGGATTAAGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 714-1588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGDMP010000691.1 Clostridium neonatale strain Marseille-Q4564 NODE_691_length_1645_cov_4.681818, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 714 30 100.0 36 .............................. ATATATAGAAGCGACTCTACTTAGTTTTAGTAGGGT 780 30 100.0 35 .............................. GTAAGCGCATTGTATTTAATGCTGATAACTCTTCC 845 30 100.0 36 .............................. GAAACAAGAACATTAACAGATGATGAAAATAAGAGA 911 30 100.0 35 .............................. GCAGTAATTGCTGTAGAACTTGCAGCAGCAATTCC 976 30 100.0 34 .............................. CTATATTCTTCTTTATATATATCTTTTTAGGAGA 1040 30 100.0 34 .............................. AGTTACTTAACTAAAGGAACACAAGTGGCTATTA 1104 30 100.0 34 .............................. GCCTGAAAGTGCAACTTATAGCTTATCTAGATGG 1168 30 100.0 34 .............................. ACTATGAAAATTTAGTTTTTACTATAGGTGGTTT 1232 30 100.0 34 .............................. ACAAAGTTGTCCATAACCTTTTTTGTAAATTCTG 1296 30 100.0 37 .............................. TGTTGTTAATGTACGAGTTAATTTAACAATAAATAAA 1363 30 100.0 36 .............................. GTAAATGCTATTATAAGGCTTGTTGATGAAAAAGGA 1429 30 100.0 35 .............................. GGTAACCGAAGGGCTTCGTATAGGGTATTCCTAAA 1494 30 100.0 35 .............................. TTGGGAGTAATGTATTCTGATACTAATATAAATGG 1559 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 100.0 35 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : GAATTTGTTCCCTTCAGTTTAAAGGAGGGGATGTAGTGGGAAAAGTAATGAACTATAATTATGCATTTGTATTTTATGATGTTAATGAAAAAAGAGTTCAAAGAGTGTTTAAGGTTTGTAAGAAATACTTATCACATTTTCAAAAATCAGTCTTTAGGGGAGAAATGTCGCCGTCAAAATTAATTAGATTCAAAACAGAATTAAATAAAGTAATAGATAAAAATGAAGATTTTATTTGTATTATAAAGCTTATGAATGATAATGTATTTGGTGAAGAAGTACTTGGATGTTCAGCCAATAATACAGGAGAAGATTTAATAATATAAATTTACCAGGTAGAAATTTCAGCTATCTTTGTTAAAGCTAGAAATGATGGGATATTTGATAGTTTTAACATATTTTTATCAGAAAAACTTCATTCATTGGTAAATTTTTTGTGATGTGGTATTATTACTAGTATAGAGGAATTTTTGAAGTTTAAGAATGCCTAAATCGCGTTG # Right flank : GAAAAATCAGTAACTTATTCTTTATCATATAAAAAAGATTAAGATTAACATGAGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //