Array 1 7302-5218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNGJ01000024.1 Listeria monocytogenes strain J2692 J2692-1.seq24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7301 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 7235 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 7169 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 7103 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 7037 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 6970 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 6904 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 6838 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 6772 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 6706 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 6640 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 6574 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 6508 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 6442 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 6376 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 6310 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 6244 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 6178 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 6112 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 6046 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 5980 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 5914 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 5847 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 5781 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 5715 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 5649 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 5583 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 5517 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 5451 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 5385 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 5319 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 5253 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 244348-245088 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNGJ01000006.1 Listeria monocytogenes strain J2692 J2692-1.seq6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 244348 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 244413 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 244478 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 244542 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 244608 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 244672 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 244735 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 244799 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 244864 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 244928 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 244994 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [245017] 245060 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //