Array 1 799400-800419 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042163.1 Alkalihalobacillus miscanthi strain AK13 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 799400 32 96.9 33 G............................... GTTTTAAATTTGCCATTGTGACACTCTCCTATT 799465 32 96.9 34 G............................... ATTATTCCACTAATAATGAAAAACAGTGGCAATA 799531 32 96.9 33 G............................... ATCAAGTCGTTCATTTGATCTCTCCTCTACTGT 799596 32 96.9 35 G............................... AGTTTGCACTATGAAATGAATCGCGGTGTATCTCC 799663 32 96.9 33 G............................... TTTGATGGTGAAAGAAAAAGGCTTTCTACTTTT 799728 32 100.0 33 ................................ AAAAGGAAAAAGATGATCCTAATTTTAGGGTTA 799793 32 100.0 34 ................................ ATTGCTAAATGTCTGCTACTCATTGGCTCATATC 799859 32 100.0 35 ................................ CAAAAGAGAAACCATGTATCTGTCTTGCTCATCTC 799926 32 100.0 34 ................................ ACAGGTCTAACGCTAACTTGTACTTCACAATGTA 799992 32 100.0 34 ................................ ATTTCTTCTTTTGTCTTAATACCTAACACATGAA 800058 32 96.9 34 ............G................... TTACAAAATATTACCGTTGAAAGAGCACAAGAAA 800124 32 96.9 35 ............G................... GGGTACGACAGGTGCGCTTGTTTAGACGCCTCGCC 800191 32 100.0 33 ................................ CCTTCGAATGACGAAAAAGCAGAAGGAATTGTG 800256 32 96.9 36 ............G................... ATTTATACATCCTCCTCAAATAATTTAACCGTGCTC 800324 32 96.9 33 .............A.................. CTGTTGAACGAATTGACCATTAATTTTAAACCA 800389 31 90.6 0 ...........................-.T.G | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 97.7 34 ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATCCTAATAGCCAATACATGGTCATAAGCGAGGCCTACGTCAGAATATCAGTCTTGACAACGGAGAAATTGTTTTAAGGAAGGGTCAGCGGAAGTACTTTGCCAATTGCAATTGATACACTATGTAAAAAAGGAAGAGGCTGTTAATTCTCTTATTTTTGACGGCTAATACTAAAAGGAGAGCACCAATTCGCTCTCCTTATCCTGAATCCCTTTTATTAAATTTAATAAAATTTATCACTGTTATCTCGGATTTATTATTTGGCTTTCAAAAGCAGTATTCCACCAATCAAATGTCAAAAAAAATGAATGTGTAGTGAGTCGCCCTCTTCTTTTAATAGGTGCGAACCCGAAGCGAACATAAAATCCCTAGAAGACCCGCACCACTTTTTCGGATGAATGTGTGAGAATATGTAACGGATATGGAGCGTGGGTTCTTTTTCTTAATCAATTTGTGGTACTGTTTAATAGGAAAAGGTAGTTTTAAGCCTTTTTCTCGCT # Right flank : GAGTGCACGAATTAGAATGATGACCATATCATCCTAGAAAATCGGACTATGTATCCCTCTCGCTATGTCTGTACTTGTAAATGTCTAGACAAAAACCCCCACTTGTAAAGTAGGGGTTTTCAAGTTTACAATCCAAACACAATTGGCATCCAGAAGTACACGGCTCCGGTAATGACGATAATAGAGACGATGTTGAGCCATACACCAGCTTTCGCCATGTCACCGACAGCGAGATAGCCTGCGCTAAATACAGCTGTATTCGGAGGTGTGGCCACTGGGAGCATATAACAGGAACCAGCAGCTAGTGCAGCTGCAGCCATAAGAGGTAGAGGATCAACACCTAAGGCAATACCGAGTCCGACAGTAAGTGGTAGAATTAAATTTGAAACGGCTGTATTCGAGAGAATTTCAGTAATCCCGAGTACAAATACGACTAAAAGCAATAGGACAAAAATGTATTCCATCCCTTGAAGCATTTGTAGTAAATCTCCAATCGATTC # Questionable array : NO Score: 8.73 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 817178-817738 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042163.1 Alkalihalobacillus miscanthi strain AK13 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 817178 32 100.0 33 ................................ CCAAATGTCCTTATAATGAATTGGTGTATGTGC 817243 32 100.0 35 ................................ AGCCTCTTCCTGCTCTTTTGCCACTATATACCCTT 817310 32 100.0 34 ................................ TTTTAGGCACATTACTAGGGACTTTAACACCAAA 817376 32 100.0 34 ................................ AATTAAATCACATTGGCTTGAACAAGGTTACGGA 817442 32 100.0 33 ................................ CCTGACGGTCCGGGCAATCGAAAGCCGTTTTAT 817507 32 100.0 34 ................................ TTGTGAAGGTTGGCGAAGAAACAATTTATAAAAA 817573 32 100.0 34 ................................ ATAGAACCACATCTCCAATTTTAATATTCATTAT 817639 32 96.9 36 ...............................A CTCTTTGATCTTAGTCTCAATTGCTAGCACCGAGTC 817707 32 78.1 0 ..........C..GA........A...C.T.C | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 97.2 34 ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TAACTTAATGTAATAAAACAAATAATAATACTTAGCATAATTAAATTCTTTATTTATTTAATGAATGTCATAGAATAAAAATATTACTTGTTACCGTTCTGAAAAATGGTCGCTGTCATCAACCACGCGCCATATGACCTTTTTTACAATTAGATGAACTCTATTAAATTTTCTTTTATAAAGATCATCTATCAGAGGTCAAATAATAGATTTTTATTGTATGAAAAAAGGAAATCAGTGAATTTATTCAAACAATTAATAAAGAGCCAATTTCAAGTCAAAAGCTACAAAGAGGTTATCTTCATTTAGGAGAACCTTTTTTGAGAGTAATTTCACAATTGGTGCGAACCCTAAGCGAACATAAAAACCCTGGGTGACCCGCACCGCTTTTTTGACTTAATATGTAACAATGTGTAATTGGTTTTGCTGAAAATCTTTCTTGAAGGCTAATTTGTGGTAATATTTAGGGGGAGAAAGGTGCTTTTAAGCGTTCTCCCGCT # Right flank : CTGCAGAAATTAAGGGAATATGTTTAAAAAGGGTGGAAGGTATGTCTACAACTGACATGAAAGCAAGTATCAATCAAGATACGCTAGTGAAATGTGTGAGTCAGAAGCTTAAGCGCTCTTTAACAAAAGGAGAGCTTGAATGGAACGTACAAGCTTTATCGGGAGAAGTGAATTTTACAACGCAAGGCATTTACCGTGTTTTTGGCTCGGCCCTTAAAAAGATAAAATGGTCGCTTATAATAAAAGTGATTCAAGAAGTAGAGGATAAACGGAACCCGCAGCACCATAATTATTGGAAACGAGAGGCTCTTATCCATCAAACTGGTATTCTTAATCGTTATTCGAATGTCATAAAAAGCCCAACCTGTTATGAGGTCGAGGACAAAAGTGATGGTACGATTTGGATTTGGATGGAAGAAGTGAATGGGGCTCATAAGCAGTTCTCAAAGGAAGATTTTGCTGTTATAGCGAAATCAATCGGACACTTTAACGGAACGTAC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //