Array 1 264030-265451 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUU01000011.1 Streptococcus agalactiae strain 351521 Contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 264030 36 100.0 30 .................................... AATAGGGCTAGTGCGACACTCTCGAGCTTA 264096 36 100.0 30 .................................... ATTATTTTATAAAGTGACAAATATGTCTGT 264162 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 264228 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 264294 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 264360 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 264426 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 264492 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 264558 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 264624 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 264690 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 264756 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 264822 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 264888 36 100.0 30 .................................... GACCTCCTCGAAATTGCTATCATTCCATAT 264954 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 265020 36 100.0 30 .................................... TCCTCTTTCTATGTTTCAATTGCCAATTTT 265086 36 100.0 30 .................................... AAAAAATCTTGAATCATCATATAAAATCTT 265152 36 100.0 30 .................................... AGCTATCTTTTTCGTACTTTGAAATAGTTT 265218 36 100.0 30 .................................... TGGAAAAAGGGCAAAGTATTCTTGATTATA 265284 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 265350 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 265416 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //