Array 1 59807-61395 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWRM01000014.1 Pseudomonas aeruginosa strain PAC98A IPC168_14.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59807 28 100.0 32 ............................ TCGCACGTTGTGACCTCTGGCTTCGCATAATG 59867 28 100.0 32 ............................ CGTAAGACCCGAGCCGCCACCAGTACCACCGC 59927 28 100.0 32 ............................ TTGGAAACAGGGCTGCTTTGGATGTACCCAAG 59987 28 100.0 32 ............................ TCTTCGCCGCGCTGGATTCGAAGGAGCGCCGC 60047 28 100.0 32 ............................ ATGTAGCCCAGCCCCAACGGCAGATCGCCAAC 60107 28 100.0 32 ............................ GATCACTCCCCGCTGCGCATGCAGCGTTCCCC 60167 28 100.0 32 ............................ TGAGAGATCGGGCGCTTTGGGATGTGACCAAC 60227 28 100.0 32 ............................ TGCTGGGCTTCTACAACCCGCGGGTGGTGCTG 60287 28 100.0 33 ............................ TTAAAGGTGCGTGATGGAATGGCTCGGCGCGAT 60348 28 100.0 32 ............................ TCAACGACCGCACAGTTACTCAGTACGTCGAC 60408 28 100.0 32 ............................ AGCACTTCGGACTCCGACATGGCCGTGATGGA 60468 28 100.0 32 ............................ GAGGGGCCGTATCGACGGTGATTGATGCGACA 60528 28 100.0 32 ............................ AGCAAGGCATCCGGAAACGGGCCTTGGGTCAC 60588 28 100.0 32 ............................ ATCGCCGCCACCGTCGCCGCCATCACCATCCC 60648 28 100.0 32 ............................ TATACCCGACTTTTCAGCCCCGCCGCCCTCGC 60708 28 100.0 32 ............................ TGACGGGCCGATTTATGAATCAGCCCCCTTTC 60768 28 100.0 32 ............................ TGGGCGATCTTTTCGAGGTGGTAAGTATGCGC 60828 28 100.0 32 ............................ TAGAGGGCGACCTAGAGCTTGCGGCGCAACAC 60888 28 100.0 32 ............................ CGCACGGGGGACGAGTTCGCAGCGCATTCGCG 60948 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 61008 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 61068 28 100.0 32 ............................ AAGAGGATGACGGTGAGCCGTGCCCGGAATGC 61128 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 61188 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 61248 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 61308 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 61368 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 70779-69911 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWRM01000014.1 Pseudomonas aeruginosa strain PAC98A IPC168_14.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 70778 28 100.0 32 ............................ GCCACAATTCGTCGAGGACCAGGACCGAACCA 70718 28 100.0 32 ............................ ACGCCGAGGAAGCCAACGAAGCCGCCAGCGAA 70658 28 100.0 32 ............................ AGCAACGTGGCCCAGCTCGCCAACTGATCGAG 70598 28 100.0 32 ............................ ATGCGCACGCGGGCCTTGGTCAAAGCTCCCCC 70538 28 100.0 32 ............................ GGCAAAACCACCCTCACAAACGGCATCATCGA 70478 28 100.0 32 ............................ AGCAGTTAGGCGATGCACAGCCAAAGCTACTC 70418 28 100.0 32 ............................ ATGACCTTTCGATGCTTGCGCGTCGGCTCGGC 70358 28 100.0 32 ............................ TTCTCCGGGCGCGCCCTGGAGCCATCATTGCC 70298 28 100.0 32 ............................ AACTTCCGGCCAGGCCGAGGGCGACACTTACA 70238 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 70178 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 70118 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 70058 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 69998 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 69938 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //