Array 1 2099252-2100975 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025825.1 Akkermansia muciniphila strain EB-AMDK-10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2099252 31 100.0 34 ............................... ATCGTATGCGGGCAGGCCCATTTCGCCGCAAAAG 2099317 31 100.0 34 ............................... TAAAAAATAATGATAAATTGAATGCATCAAAGGG 2099382 31 100.0 34 ............................... CCGGCGCGGGGGCCAACATGTCTTGTCCGCTTGT 2099447 31 100.0 34 ............................... CGGACGGCTCTCTATTCTGAAAATCAATCTCCTA 2099512 31 100.0 33 ............................... TTTATCAACTCTAATAAGTTTTTTGTTCATGCG 2099576 31 100.0 33 ............................... AGTTTCCATGATTGTTTCAACTTCTCCGGTGCG 2099640 31 100.0 34 ............................... CACATGGAACATTTACAATTTAAATCCAAAAGAT 2099705 31 100.0 34 ............................... TTTATTGCCTGCGCACAGAAGTGTCCATGTCCAG 2099770 31 100.0 35 ............................... TGTTTGGTTGATTGTTTTGTTCACCGCCCCTTATT 2099836 31 100.0 34 ............................... AAGGTTGTATGACAAATTACAAATAATTAACATG 2099901 31 100.0 36 ............................... CTGTTCCGCAATCAGGGCAATGTCTTTTTGCTGACG 2099968 31 100.0 35 ............................... CGAAAGATATAGCGGCGGCCTTTATGCTGACTCCC 2100034 31 100.0 33 ............................... CCTACCAGATGGCCCGCATAGGCATTTCCGCGG 2100098 31 100.0 34 ............................... CCTTTGGAGTGCGTTCTTAACCCGTTTTTTAGCG 2100163 31 100.0 34 ............................... TGCTTGCCCATGCCCGCTTCCTGGAATCGAAATT 2100228 31 100.0 34 ............................... CGGCGATAAGGTTAATGGTTGCGACTACATGGGG 2100293 31 100.0 34 ............................... AGTTTGTCTTTATTCATAGTCTATTGTCTTTCTA 2100358 31 100.0 35 ............................... GTTTACCCCGGGTCCGGTCGGGCAGGGGTGGCAAA 2100424 31 100.0 34 ............................... TGAATGCTACGTCCTGCCAATTCTGGGAGATGAC 2100489 31 100.0 34 ............................... ATGCCCCCCTCCTTTCCACGATTTGAATCCTGCG 2100554 31 100.0 34 ............................... AATAGATAAAAACACTTATAACCGTATCGTGTTG 2100619 31 100.0 33 ............................... AAACGGTGATGGTTCTCTCAAGGCTAGCAACAA 2100683 31 100.0 35 ............................... ACACCGTCTTGTGCAAGTCCATGACGGCGGTATGG 2100749 31 100.0 34 ............................... AAGCTCGCTTTTAATGCGGTTCCCCTGCTTTTTC 2100814 31 100.0 35 ............................... GAGGCAGAAAAGCCAATGCGCACCCATGTTGACGG 2100880 31 100.0 34 ............................... AAAAATGATATAAAAAATATACTAAGGCCCTAAA 2100945 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 27 31 100.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGTTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTCCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAGCGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CATTCCCGCCTACTTCTACGTCATCCGCTACGAGCGTCGCTGAGGAATGACAGGAGAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGCAGGAACAGGCCAGGCACGAGCTATCTTATAAAAGTCGGAGCTAAAAAGAGGGCAGATGACAGGTATCTGATATAAGTACACAAGCTATGCAGGGATGTTGCACAAGATCTGCAAAGGGTAGGTGATAGAGAAACGACAAGGTAAAAAATCATGATAGGATGTCCCGCATGTGTACACCTGCATATTGCATTCCCTTGTATGGCTCCATGACTGTTATCTCGCCCGAAGACCGAAGGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAAAGAAGTAAGACGACATGCTGGGTGCGGGATGGTCGCACCCTCACGGGTGCGTGAATTGAAGTTTTATGTATGTTTGACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2592918-2588872 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025825.1 Akkermansia muciniphila strain EB-AMDK-10 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2592917 33 100.0 33 ................................. TTGCGATATGAGGCTACCCGGCCAGTTGCCTAT 2592851 33 100.0 34 ................................. TTGGCATGGTCGTCGTAAATGCTCATAATCTTAT 2592784 33 100.0 34 ................................. AAGTAACGGAAATCACTTCCGAAGGCCGTTCCAT 2592717 33 100.0 34 ................................. CGCTGATACCATTTCCAATTCCCGGCCGGTTGCG 2592650 33 100.0 34 ................................. TGTTTCTACAAGTTAGATACATTTTAATTATATA 2592583 33 100.0 34 ................................. CTTTTTAGGGACTAGGTATAAAAAGTTTCCCCCT 2592516 33 100.0 33 ................................. ACGGGCCTTGCTAACCACTTCCGGCAATTGCAC 2592450 33 100.0 34 ................................. ATAATAGTCCGGGGAATGTACGTCTACCGCACCC 2592383 33 100.0 34 ................................. GGCAAACAGGACAAGGGACAGGACGCCGGAACCG 2592316 33 100.0 34 ................................. TGTCACCTACGGCGCAGGACTGCCCGCCGCACAA 2592249 33 100.0 34 ................................. AATATAGGCATATCGGCCTGCCCCCTCATAATAG 2592182 33 100.0 34 ................................. CATGATTGTTTCTACCTCGCCGGACGGAAAAATG 2592115 33 100.0 33 ................................. CCCGTGCCTGAAATAAATGTCTTCCGACATCGG 2592049 33 100.0 34 ................................. TCCGGATGCTGGAAAGGCTGTTGGAGTTGGCCCC 2591982 33 100.0 35 ................................. CGGATGCCACCGGGTGCCGATGACGAACACCCGCC 2591914 33 100.0 35 ................................. CCTTGATTTTCTACTGGATTCTTTAAGCGATGACA 2591846 33 100.0 34 ................................. TCGCGGAGACCGTATCAGATTCCCGGCCGGTTGC 2591779 33 100.0 33 ................................. AGGGGGGCAGGGGGTTATACCCGGCTTACCAGC 2591713 33 100.0 33 ................................. TGCGATACGAGGCTACCCGGCCAGTTGCCTATA 2591647 33 100.0 34 ................................. ACCGGTGGAAAGGATTGCCCACACCGCCGTTACA 2591580 33 100.0 34 ................................. ATTGTTTTGGTTCCTTTCTTTTAGTGTTTCTTTT 2591513 33 100.0 34 ................................. TTTTAGTTTAGTTTAGTGTTTATTGTTTCGGGGG 2591446 33 100.0 33 ................................. CCACATGGACGACCTTGCCGCCGCCGTAGACGG 2591380 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 2591313 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 2591246 33 100.0 34 ................................. TTGTATAAAGTCCACCATCTTGACGGCACCTGCA 2591179 33 100.0 34 ................................. ACAGGAACGCCCCCCCCTCCGGGAAGAAACCGGC 2591112 33 100.0 34 ................................. CGCAAAAATGACGAGGGACAGAATGCCGGAGCCG 2591045 33 100.0 33 ................................. GATTGTTCATGATTTAGTTTCCTTTCTTCTTTT 2590979 33 100.0 33 ................................. CTTTCGGTTGTGTTCCCCGCCCCATAGTAGGGC 2590913 33 100.0 34 ................................. AACCCCGTCTAAGTAGTCCACATCGCCTAAGCGG 2590846 33 100.0 34 ................................. TATTGTTTATTGTTCCGGGGGTTGCCCCCGTTGA 2590779 33 100.0 34 ................................. ATTTCCGCCGTCTACAGCGGTAGATAAATCCATC 2590712 33 100.0 33 ................................. ATCGTACTTGGGCAGTCCCATATCTTCACAAAA 2590646 33 100.0 34 ................................. AAAACGATTGTAGTTGATCTGCTCGAAGACGTTT 2590579 33 100.0 34 ................................. AAGGCCAAAAGCCCATTTAGCGGTGTAGCCCATG 2590512 33 100.0 34 ................................. TGCCCTGGGACCTTAAGCCCGCCCTCGCAGACCT 2590445 33 100.0 33 ................................. TTAAAATATAGTGTTAAATTACATTCATCAAAG 2590379 33 100.0 33 ................................. CACATGGAACATTTACAATTCCAAAAGAAGCCA 2590313 33 100.0 34 ................................. TCGCCGAAACTGTTTCCGATTCCCGCCCTGTTGC 2590246 33 100.0 34 ................................. CCGGTTCCCCGGACGATATTTTCCGGGGGAAAAG 2590179 33 100.0 34 ................................. CCTCAAAAACGTCTCCATGTCTAAGGGGCCATAG 2590112 33 100.0 34 ................................. TGTGGGGTCGGGGTCATCGGTGCCAAGGTCTCCA 2590045 33 100.0 34 ................................. CACGTGGAACATTTACAAGTTGAATCCAAAAGAT 2589978 33 100.0 34 ................................. CCCCGTATATTCATCATACATGGGCAATCCCATT 2589911 33 97.0 34 ...................A............. CTTGAGCGGGAAGCCACCCGGCCAGTTGCCTATT 2589844 33 100.0 34 ................................. CGTCAAAAATGTGTCGATATCGGCGGGGTCATAG 2589777 33 100.0 34 ................................. TGGACCGCAAAGACGGTGCAATTAAGTACACCCC 2589710 33 100.0 34 ................................. TATCAAGCTCTTGCGAGCCACAAGACCCCTACCG 2589643 33 100.0 34 ................................. TGCGTACTCATGGCATGCGCCCGTGTACATGCTA 2589576 33 100.0 34 ................................. ATGAAGGAACGTTTCCATGTCCGCAAGGTCATAG 2589509 33 100.0 34 ................................. CGGGTGCAAGTACTTAAAGTGGTTGGCAAGGCCC 2589442 33 100.0 34 ................................. CGTCAAAAACGTGTTGATATCTGCGAGATCATAG 2589375 33 100.0 34 ................................. TGCGAACAGGACAAGGGATAAGATTCCGGAGCCG 2589308 33 100.0 34 ................................. TTAGATGATAAAGAGAGCGGTGTACTCTTTTGTG 2589241 33 100.0 34 ................................. TATTGTATTGTTTAGTGTTCCGGGGGGGTCATCC 2589174 33 100.0 35 ................................. TCCAGCCCCCTCCAATCTCAATCCCTATCGGAATA 2589106 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2589040 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2588973 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2588950] 2588904 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 61 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //