Array 1 15174-14901 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPZ01000252.1 Streptomyces albidoflavus strain 38 NODE_102_length_15174_cov_26.9664_ID_203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 15173 28 100.0 33 ............................ CTCCGTGCGGGTCCCGTTCTCGGCGACGTCGCA 15112 28 100.0 33 ............................ CTTCGTGCTGTCGTGGATCAAGCCGAGGTTGAC 15051 28 100.0 33 ............................ CGCGCCGCAGCGTGGGGCCACGACAGAGCGCGA 14990 27 89.3 34 .C.C.....................-.. AGGCACCGTCCAGCTCCGGGTCGGGGCTACGACC 14929 27 78.6 0 ......A....C.......C.-...G.G | CC [14908] ========== ====== ====== ====== ============================ ================================== ================== 5 28 93.6 34 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : | # Right flank : CGGTACGCAGCGCACGGTCAGGCGTACCCGGCACCGCCCGCCCCGGCCTGGGGCGCCCCGCACCACGGCGGCCACCACTACGGCCACCGTCGCGACCGCGGCTTCGGCCGCATGCTCTTCTCCTCCTGACCCCCTCGCTTCCGGCCGTACCGGGCGGGCCCTCACGTCAGAGGGGCTCCCGTCCGGTCCGGCCGGCCGGAGACGGGGGAGCGGGCGACGACGACGGAGCCCCCGGCCGCCTGAGGCGGCCGGGGGCTCCGGGTGGTGCGCGATACTGGGATTGAACCAGTGACCTCTTCCGTGTCAGGGAAGCGCTCTCCCGCTGAGCTAATCGCGCGGGACCGACCACGACCGCAGACCGGTCGGAGTTCGGGGAGTGTGGTGCTGCGTGCGCGATACTGGGATTGAACCAGTGACCTCTTCCGTGTCAGGGAAGCGCTCTCCCGCTGAGCTAATCGCGCGGGCGGAACCGTGAGGTTCCGAGTGGACGATACTGGGAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [18.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5308-5519 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPZ01000421.1 Streptomyces albidoflavus strain 38 NODE_48_length_19537_cov_32.3191_ID_95, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5308 29 93.1 32 ...............A......T...... CCTCGACCGGCACCCGGTGAGGCCGCCCGGTG 5369 29 100.0 32 ............................. GGGCCGCTCCCGGCGGCTCCGGCCTGGATCAC 5430 29 82.8 32 .............CT......GT.....G AAGGTCGGGGAGATGGTCGATCCGGCGTTGCT 5491 29 89.7 0 .............C...A...G....... | Deletion [5511] ========== ====== ====== ====== ============================= ================================ ================== 4 29 91.4 32 GTCGGCCCCGCACGCGCGGGGACGCTCCC # Left flank : CACCAAAAAACCGGCCACCGCCAAGAGCACGCCGCCGAGGACGGCGGCCGGGGCGGTGCGCTTCAGCACGTCTGCTCCCCGTGCTGGGTGTACTGGATGACCCGCCACCGGCCGTCGTCCCACTGCTCCGGCTGGGCGGTCGTCCGGTACCTCATCGGCTGCTCGCTCGGCAGGGGCAGCGGCTTACCGTCGCGGGTCGTCTCCCTGTCCTTCAGGTCCAGGCAGTCGGTGATGGTCGCCGTGGGCGGAGACGACTTCAGGTCCACCTTGGCCTTCGGCTCGTGCCCGAGCTTGCCGTTGGCGCGTGTCCCCGCCTCGCGCATCGTCCGGATGTCCTGGCGGATCGTCGCCAGCGCCTCCCCCGAGGCGTAGTCCTTGATGCGCGTCCCCTTCTCGGAGGCCTTCTGGACCGCCACCGCGTGCGCCCGCCACATGCCTTGGTAGGCCGCCAGGCGGCCTGCTCCTCGGCCGACTTCAAATCGGAGGAGGCCGAGGCGGGC # Right flank : CCGCAACGGAGAGCAGTTGGAGATCACCCTCTAGTACTCCAGCAGCACTTCGTGATCATGGGCTGTGGGGCATCGGGCAGGCCAGCTGTGGAGTCACTGGTTCATGCCGACAGGCGTGTGGTCAGGGCGTTGGCGAACCGGTGGTACTCGGCGACGACCGGCATGCTCGTGTTCTGCCCGTAGTGGGCGAGTCCGTGTGCGAGGTCTGAGCGGGCCTCGTTCGTGTCCCCGCGCAGGAAGTGAAGGGCTGGGAGGAGAATTCTGGTCCGATCGGGGTTGGGCACGTTTCCGCCTGCCCGAAGGGCGGTCAGTAGTGCGTCTGTGCTGGCGTGCTGCCGGGCGAACGGCAGGCCGTAGGCCTGAACGAGTTCGCATAGCTCGTCGGTAGCGCGTTCCACGTCGCCCGGTTCGGCGACCCGTAGTTGCAGGAGGCTGTTGCCGGGGGTGAGGTGGCCGACCGGTCGGGCGATCGTGGCCGACGTCAGGGAAGCGGCCCCGGC # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGACGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 255-647 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPZ01000773.1 Streptomyces albidoflavus strain 38 NODE_66_length_17458_cov_37.7735_ID_131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 255 28 100.0 33 ............................ GACAACGCCGTCCTCGTCATCAACCGGCGCGAA 316 28 100.0 33 ............................ CGAGTAGCCGCCGTACTTCACGGCCACGTACAG 377 28 100.0 33 ............................ CGGGTGGTCGGCGATGAGCGGGGTGTCGCGGGT 438 28 100.0 33 ............................ GATGTTCGGCTACCTCAACGAGTCGATCGCCAC 499 28 92.9 33 ......T..........A.......... GGCCGGGTGGACCGGCCGCCTCGCCTGCGGCCG 560 27 96.4 33 .................-.......... GATCGTCGGGCGGTGGCTGGCGGCCACCGCGGC 620 28 85.7 0 ......A.............A.....GG | ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.4 33 GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Left flank : CCCCCCCTACGAAGTCCGCATCACCGCCCGCCACCGCCAGTCCTTCCAGAAGAACGGACACGGAGCGCACGTCGTCTTCCACAGCGCAACCTTCGAAGGCCGCCTGCGCATCACCGACACCGACCGCTTCACCACCAGCCTCCTCACCGGCCTCGGCCCCTCCCGCGCCTACGGCTGCGGCCTGCTCACCCTCGCCCCACTGCCCGGACAGCAGACCTGAACCATGGCCGACATCTGGTGGAAAGCCGACCCGCG # Right flank : GGGTGTGACCGAGATACGCGCCAAAGGGGCAACGGGATGATCTTGAAGCCCTGATCCGCTCGGATCTACGTGCGGCGACGTGCAGCGGGGTCGCGTTCGGCGACGTGCCGAGCGACCGAGTCGACGCCGGGCCGTGCGTATCGCTCCAGGGAGCGGACGGAAGCGTGGCGGGAGCGGGCCAGCAGCATCGGGGTGGAGGTGCCGTCTTCTGCGTCGTGCGTGAGGGCACTGTGACGTAGCCGGTGAAGCGTCCAGCCGTCCAGATCCTCGATGTCGTCGGGTGAGGCGAGGGGGTTGGCCAGCAGCCGCGTGTTCTCCTCGAAGATCTCCTCAGCGCGGCGGTAGGAGAGCCTGGCCCGGTCGGTCTCCGGGCACACGTCGAGCGTCGGTGTTCCGGCCGGCGCCTTGCGGTCGGTGAGGAACAGCGGGCCGCGGGTGCGGCGGGCGATGAGGCGGGGCAGGAGCTGGGTGGTGCCGGACTGCCAGTGAATCCATTCGAT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4457-2971 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPZ01000234.1 Streptomyces albidoflavus strain 38 NODE_94_length_15750_cov_25.6172_ID_187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================== ================== 4456 29 96.6 32 ............................T CCGTTCGAGTCCGTGCTGCGGGACGGGGTGCG 4395 29 100.0 32 ............................. CCTTCGGTGTCGAACGGGTCGTCAGAGGTCGA 4334 29 100.0 32 ............................. CGGCTGATCAGCTCCAGCTCAACACCGGGCTT 4273 29 96.6 32 ...A......................... GCGACGACGGTCCCAGGTCCGTAGCCCCGCCC 4212 29 100.0 32 ............................. CGCTGGGATGACGGTGACACGTCGTTCGCCAC 4151 29 100.0 32 ............................. CTGATCGGGGTACTCGTAGCCGAGGGCCACGG 4090 29 100.0 32 ............................. CGGGCGTTGCCGTCCACGCGGCCGTCGTTCGG 4029 29 100.0 33 ............................. CGCCAGGCCACCCGCGACGCGAACGCGACGGCG 3967 29 100.0 32 ............................. CCGTTACGAACCTGCGAAGTTCCAAGAGGGTC 3906 29 100.0 32 ............................. GCGGCGAGGGCGGCGGCCGAATCCATCTCCGC 3845 29 96.6 32 ............................T CACCGACGGGCAGACCTCCTATTACTCGGAGG 3784 29 100.0 32 ............................. CGTCCGGCCGGGGGGTCCAGCTCTGCGAGTCG 3723 29 96.6 32 ............................C CACTTGGGCGCAGTCCGGTACCTACCTGGAAG 3662 29 96.6 32 ............................C TTGTCCATGTCCCACATAGCGCCCTTGGCGCT 3601 29 100.0 32 ............................. CCCCTCGCCCACGCCTACCGCACCGGCGCCCG 3540 29 96.6 32 ............................T CCCCACGTCGGGCGGCGTGTGAGAACAGCTGC 3479 29 100.0 30 ............................. CCAGGTGGCCACCCAGTCGCCCGGCAGCCG C [3454] 3418 29 89.7 32 ..........T..C...A........... GAGTTCGCCGCGCGGGTCGGGTTCGGCCGACT 3357 29 96.6 32 .............C............... ACCGCACTCGCCCGGTTCTCCACCCTGCTGAC 3296 29 93.1 32 .............C..............C AGGCCGTCCCTGACCGAGGACCCTCTCTCTGA 3235 29 89.7 86 .............C..T...........C GGCGGTCGGTTCACAACGGGAACGGACTGGGTGTCGGCCACGGGGGATGCTCCGGCGTAGGCCAGGACCACCGGGCCCCGGTCCTT 3120 29 93.1 32 .C...........C............... CACCGGTACGCGACGCCCGAGGCCGCCCGTCT 3059 29 86.2 32 A............C.......G.....T. GGCGGCACCATCTCCATCCGCCTCGACGCCAT 2998 28 72.4 0 .............C.AT..AA..-...GC | ========== ====== ====== ====== ============================= ====================================================================================== ================== 24 29 95.8 34 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : GGGATGTTCCTGACCCCCTCATGAGTCTCGTCTTTGATGGGCTGTCGGCCACGCACCCGCGGGGATGCTCCCTCGACGTCGCCCTCGCCGTCCACGTCGGTGCGATCGGCCCCGCACCCGCGGGGATGCTCCGCACCGGTACGCGACGCCCGAGGCCGCCCGTCTATCGGCCCCGCACCCGCGGGGGTGCTCTGGGCGGCACCATCTCCATCCGCCTCGACGCCATGTCGGCCCCGCACCCATGGAAATCTCGCTCGCCACGGTCATCGCCCTGGCACTCTGCGGCCGGCGGGCCCACCGGGTGCTGGGCGCACGGCAGTTGCCCACCAAGGCACATGCGTGGGTGTGGACCGAGAACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCGGCCCCCGCCGCCCCTGGGTCGGCGCCCTCGCCGCACCTCCCGTACCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : TCGCCACGGTCATCGCCCTGGCACTCTGCGGCCGGCGGGCCCACCGGGTGCTGGGCGCACGGCAGTTGCCCATCAAGGCACATGCGTGGGTGTGGACCGAGAACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCGGCCCCCGCCGCCCCTGGGTCGGCGCCCTCGCCGCACCTCCCGTACCGCACGCCCGAAAGGGTGAACTGTAAGGCGTCATGTTGACGCCCTCGGGGGTTGATCTGCAGATCTGCACGACACCGCAGGCAATCCCCGTGCGGCGGCGCCACGGCCCGCCGTACACCGGAGGAGTGACAACACCCACCCCGCCCGTCGTCCCCGTCATGCGCCTGGCCGACGAGAGCCGCCCCACCACCGGGATAGGCCAAACCGCCCGGCGGATGCCCGCCGTCCTGGCCCGCACCGCCCGCCTCGCCTGGCGCGCCGACCGCCCAGCCGTGGTCGGCATGGTCGTCGCACAGGTCACGGCCGCCGCCCTCGCGG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5036-4704 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPZ01000234.1 Streptomyces albidoflavus strain 38 NODE_94_length_15750_cov_25.6172_ID_187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5035 28 100.0 33 ............................ GATGGAGCGGGCCGCGCTGATCGCGGCCGGGGC 4974 28 96.4 33 ........................T... TGACCCCCTCATGAGTCTCGTCTTTGATGGGCT 4913 28 96.4 33 .......A.................... CTCGACGTCGCCCTCGCCGTCCACGTCGGTGCG 4852 28 96.4 33 A........................... GCACCGGTACGCGACGCCCGAGGCCGCCCGTCT 4791 28 89.3 33 A....................G.....T GGGCGGCACCATCTCCATCCGCCTCGACGCCAT 4730 27 78.6 0 ...............AT..AA..-...G | ========== ====== ====== ====== ============================ ================================= ================== 6 28 92.9 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CCGAGCTGCGCGGCATGGGAGTGAGCGTGCTGTACGGGGAGGGCGGGTTCCAGCCGAATCCACCCGGCGAGGGCCGCGAGTTCCCATGGCGCCTCGCCCTCGACGAGGTCGAGCGCGCTGTCGGCGCGGGGCGCTAGCCTGCCCCCATGTCCTCCCTGCCTGCGGCCCGGCCGCGTCCTGCGTCGGTGGTGAACGCGGAGATCCGCGCGCTGATGCTGCGCTCGGGCGGCCGCCTGGCTGCCGGAGATAGGGCCCGGTACGTGGCGCTGATCGCGGAGTGGGCGGAAGCGGTCCGCGATGCCGTCCGACCTGCGGCGTAGTATCCGGCCGTGGACATCCCCGACACCTTGATCGACCTCCAGCGCGCCGCCGACGCGGAGTGGGCGCGCCTCGCCGAGCTGACCGACAACGACGAGCGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACCGAGTGGGCGCGTGAGGCCGCGCGGCA # Right flank : CTCGCCACGGTCATCGCCCTGGCACTCTGCGGCCGGCGGGCCCACCGGGTGCTGGGCGCACGGCAGTTGCCCACCAAGGCACATGCGTGGGTGTGGACCGAGAACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCGGCCCCCGCCGCCCCTGGGTCGGCGCCCTCGCCGCACCTCCCGTACCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGTGTCGGCCCCGCACGCGCGGGGATGCTCCTCCGTTCGAGTCCGTGCTGCGGGACGGGGTGCGGTCGGCCCCGCACGCGCGGGGATGCTCCGCCTTCGGTGTCGAACGGGTCGTCAGAGGTCGAGTCGGCCCCGCACGCGCGGGGATGCTCCGCGGCTGATCAGCTCCAGCTCAACACCGGGCTTGTCAGCCCCGCACGCGCGGGGATGCTCCGGCGACGACGGTCCCAGGTCCGTAGCCCCGCCCGTCGGCCCC # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 9129-7798 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPZ01000234.1 Streptomyces albidoflavus strain 38 NODE_94_length_15750_cov_25.6172_ID_187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 9128 28 96.4 33 .........A.................. CCTGGGTGGGCGCGGTGACGAGCTGGGCGCCCG 9067 28 92.9 33 ..........................TA CGTGTCGCCGGGCTGGTACTGGCCCGTGTCGAT 9006 28 100.0 33 ............................ GAGGGCCCGGACCCACCCCCGGTCCTCACCGAC 8945 28 100.0 33 ............................ CTCATCAGGGCGCTGGATGCGGCGGGGGGCACG 8884 28 100.0 33 ............................ GCCGCCTGGCCTCCCGGTGGGCGCGGACGGTTT 8823 28 100.0 33 ............................ GCTTGGTGGGCACCGACTGGGCGTCGGGCCGCT 8762 28 96.4 33 .................A.......... CCTTGAGCTGCCGCACCTGCATGGCGATCTCCT 8701 28 100.0 33 ............................ GGCGTCCTACGAGCTGGAGGCCGAGGGCTTCCT 8640 28 100.0 33 ............................ CGACGCTGCTGCCAACACCGCGGGCGACGTCTG 8579 28 100.0 33 ............................ CGACCGGTACTTGGGCGGCTGGCTGTACCTCAA 8518 28 100.0 34 ............................ GATCACATCGCCGGGGCGGCTCCGTGCCGGCGGG 8456 28 100.0 33 ............................ CCCGTGTGGTCCGCCGAACTCGCCGGCGCTGAC 8395 28 96.4 33 .............G.............. GAACATCGCGGTAGTCGTGATCGCGATCCGGAA 8334 28 100.0 33 ............................ TGCCGTCGTCGTGGCGTCGCCGCGGTCGGACCC 8273 28 92.9 33 ...........G.T.............. GAGGCTGGTGTTCCGGCGGCCGGTCCAGGAGTC 8212 28 92.9 33 ............TG.............. GCGACCACCACGGCCAGGCCGTTCGCCTCTACC 8151 28 96.4 33 .............G.............. GACCGCATCGGGCCAGTGGCAGCACCGCTACGT 8090 28 96.4 33 .............G.............. GAGCTGATGGACGCCCTTCAAGGGCTGCTCGCC 8029 28 96.4 33 ...........T................ CTTCCAGACGCCGAGCCACTCGTCGCCCCAGGC 7968 28 96.4 30 .............G.............. GGGACCGGGGTGCTTCTGGGGGTACCGCGT 7910 28 100.0 57 ............................ CCAGCGGCGGGCGGCGAAGAAGGCCAGCCGCAGGTGCCGGAACTTGATCTCCCAGGG 7825 28 85.7 0 ....................C.A..G.T | ========== ====== ====== ====== ============================ ========================================================= ================== 22 28 97.2 34 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CCTGCTGCCGGAAGTCCTTGTGCACTGGGACAGTGCCGGCAGACAACAGACTTGGGCCCGCCCCTGGAACTCTTCGAGCAACGAGTCAGACATTGACCATCCCGACGTGCCCGCCCGGCCGTTCTGGGCGACCGACGAAGGAGGCCACGACCAAGTCGGCTGCGTGTACACGGCCCAAGGCATGGAGTACGCCTACAACGTCGTCATCATCGGCGGGGACCTAGTGCGCCGTGGCGACCGCTGGGAAGCCCGGCCTGACGCCAGCGAGGACACCACACTCAAAAGCTTGGCGCCGGACCAGTACCTCCGGTACGCGCTCAACACCTACCGCGTCCTCGCAACCAGAGGCACCCGCGGGACCCGCTTCTATTCCACTGACGCCCCCACACAGAAATACCTGCGGAAATTGCTGCCATGTCATAAGCCTTGACTGCTTGGATGGCCGGGCCTCGACCTCGCATTCCGAGAGGCCGTTACGTACCTTGCGATATCGCTTATTC # Right flank : GCAACAGGGCTCTGGGTGGGTACGCAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTTAAGTGGGCAGGTGCGGTGGGCGGCGGCGGTCTCCGGGCTGCACGGGCTGCCGCACCGGTCGCAGACCCCGCGCACCTCCTGCGGGCAGCAGGGGCAGGTGCAGCGGTTTCGGACAGCGGGCACGCTGTAGCCACCGATGTACCAGTCGGTGTTGCCGCAGCAGAAGCCGCATTCGCCGATGCGGCACGGTGCGCACAGGCCGCTCACGACCGGGCCTCCGCGCAGGCAGGGCAGGCGCGCGGGAACCACGAAGCCCACGGGCACTGCGGGTCCGGGCGCATGCCGAGGTCCACGGCCGTGGCGGTGTCGAGTCGCCCGGCGCACCACACGCACTCGGTGCCCCGGAGCTGCCGCTCGCCGAGCGCGGTCGGCTGCGGTAACTCCTGCGTTGTCGTCGCCATGGTCATCCCCTGCTGTCC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 13374-12857 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPZ01000234.1 Streptomyces albidoflavus strain 38 NODE_94_length_15750_cov_25.6172_ID_187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13373 29 96.6 32 ............................C TGGGGAGAACTCCCCACCTCCCCAGCTGCCTC 13312 29 96.6 32 ............................A CTTTGGCAGATGTAACAAGCCCAGCGGCGGCC 13251 29 96.6 32 ............................C CGCAGCGACGGACGCGGCCATGACCGCCACTC 13190 29 100.0 32 ............................. GCGAGGGGGCAAAAGTGTGACGCATGCGTCAC 13129 29 100.0 32 ............................. CCCCGGCCGCACCAGGGCTTGCCCCCACCGCC 13068 29 100.0 32 ............................. AAGATCCACGACCAGGGACGCGCGGTGAACGT 13007 29 96.6 32 ..T.......................... GCCAAGGCCGCATGGCTCATCGGCCGCATGGC 12946 29 96.6 32 ............................C GTCGGTGAGCTCCAGGTGCCAGCTGCCGGGGT 12885 29 89.7 0 .............C.......G......C | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.0 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : CGGAGCTCCAGACACTGCCTGAGCAGATGCCCGATGTGGCGGCGCCGGCCCCGGACACCGAACGGCCCCCTCCCGTCCGGTGCGCTGGCTGGCCCGGACCTGGCTGGCGCTCTCTGATGCTGATGACCGGGCGCTGGCGCCTCTGCGGGTGCTGCCCGCTGCCTCACCCGCTCTGGCCGGCGCCGTCTCGGCCGCCGTACTGCAGATCCGCCCGGCCTGGTACCGGGGCCGCATCGCCTGCATGGAGATTTGGCTCGCCACGGTCCTCGCCCTTGCGCTCTGCGGCCGACGGGCCCACTGGGTACTGGGCGCACGGCAGTTGCCCACCAAGGCACATGCGTGAGTGTGGACCGAGGACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCGGACCCCGCCGCCTCTGGGTCGGGGCCCTTGCCGCACCTCCCGTGCCGAAAGGGTGACGTACATGAATGAAAATGAGGCATCCTCGCGGTGACCTCGCAGGTCAGCAAGT # Right flank : CGCAACTGGATGCGCTTGCCCTCGAAGGGCGTTCGCCGCCCCCACGGCAAGGTTCTTCTCCCACCGACGACCGGAACAAGTTCTGGCGCGATCTCATCAAGGCCATGACGGAACAGGCCCGCAATCTCACTGCCGACACGCGGGCGTCGAAGACCCGGCCGACGCCCTGCCACTCTTCTCATTCGGTTGACGCGCCGACCAGACTGCCCACGCAAAGCTCTTGCCAAGAGAGGTAGAGGTCGTCGGCTGCGTCCTGAAGGCTGCAGACCTGCTTTTACTGTCGGCGACTGGGCCTCGACGGTCGACTGGTGCCGCCATCGAGGCCGTCTGTCATGCCGAAGGGACGTCCTTGAAGGTGTGGGTTCGATGCCACTGGTAGTAGGGCTCTCTGTTGGCGTTCCACCATGAGATGGTCCGGCCCTCCAGCTTCTCCCGGATGTACGTGGCGACTTCGGGGCTGTCTGCCGCCAGCGGACTCACGCGAAGAGCGCCGGCGGGAT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1179-2307 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPZ01000993.1 Streptomyces albidoflavus strain 38 NODE_712_length_2832_cov_16.3494_ID_1423, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1179 28 100.0 33 ............................ GAGGCGGCCGTCGCGCTGTACCGCGAGGTGAAG 1240 28 100.0 33 ............................ GTCGCGGTGCTTCTCCCCGCCGGCCTTGTGCGG 1301 28 100.0 33 ............................ TCTCGCGCCGGTAGCACGGCGAGATGGAGACGT 1362 28 100.0 33 ............................ GTGCCTGTGATGGTTCGCCCCGCCCGGCCCGAG 1423 28 100.0 33 ............................ CAGCAAACGCCCCGCCCAGGGACACCCGGGCGG 1484 28 100.0 33 ............................ CACCGCCTTGTGCGTGCCGAAGTAGCGGCCCTG 1545 28 100.0 33 ............................ CCACGGGGGCAGGAACTGAACCCCAACGGGGTG 1606 28 100.0 33 ............................ CTTCGTGCTGTCGTGGATCACGCCGAGGTTGAC 1667 28 100.0 33 ............................ CGCGCCGCAGCGTGGGGCTACGACAGAGAGCGA 1728 28 100.0 33 ............................ GTCCTCGTCCAGCTCGTGGTCGGGCCGCAGACC 1789 28 100.0 33 ............................ TCCGGTGAGGGTCGCCCTCCAGCGGTGGACCCG 1850 28 100.0 33 ............................ CTGAGCAGGAACTCAGGTTGCCGCCGCTGCCTC 1911 28 100.0 33 ............................ CGCTCTGACCTGCGTGACAGAGCGCGTCACACC 1972 28 100.0 33 ............................ TACGTACTCGACCCGCGCACGTTGTGACTCCAT 2033 28 100.0 33 ............................ GGGCACCCTCGCCCTGGTCGCCGCGTCCGCCCT 2094 28 100.0 33 ............................ CTCCGTGCGGGTCCCGTTCTCGGCGACGTCGCA 2155 28 100.0 35 ............................ TTTCGTGCCCGGGGGGGGTAGCGCCCGGTGGTGAT 2218 28 100.0 33 ............................ GGGTCTGTGGTCCCTCACTCCCGCCCAGTACGC 2279 28 96.4 0 .............G.............. | G [2296] ========== ====== ====== ====== ============================ =================================== ================== 19 28 99.8 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : AATGCAGGCGTTGCCTTACCAAGATCGTGGACAGCGCATAGCCACGCAAACAACCTGCGGCCCTGACCCGGACCACCGGACACCTCGTCCAGCAGGCCCCGTGTCGAAGGGGCAAGGAAGCTGTCCCACAGCCGCTCAGCCACAGCCGCCGTATCAAGCAGGTGCGACAGAAGAAGATTCGTCTGCCCGCCGGCACGCTCCGCCGACTTCCCCCACAAGACCCCTAACGGACCTTCCACTGACTCCAGCGGCACCCCTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTTATGACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGCGCTCCCTGAACTCCACCACTCGCTGCCCGGCCACGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CGTGCGCGCTGGCGACCCCCCGCCCGCCGGGACGTAGGCCGCCGATCAAGAGCCCGGAGACCGGATTCGCCCAAGGTCCGTGGTGTCGGACGGCGTCCGGGGGCGGTCTCAGGGGAGCATGGGGACGTGCTGAAACCTCCGATCGCGCCGATGCGCGCCGAGGCACGGGCCTCGCTTCCTGCGGCGGGCGCGCCGGCTGGCATGTTCTGGCAGCAGAAGCTCGACGGATACCGGGTCATCGCCTTCCTCCGCGGCGGCCGTCTGCACTTTCAGTCCCGCTCGGGGGCTGACCTCACCGAGCACTTTCCCGAGCTCCAGGCTGCCGCTGGCATCGGCATGGACCTGGTCCTCGACGGCGAACTGGTCGTGCTCCAAGGGGGGAGGCTGGACTTCGCGGCGTTGCAGCAGCGGGCCCGGCTGGAGGGCTTTCGCGCCCGCTCGGCCAGCCGGTCGATGCCGGCGCATGTCGTCGCCTTCGACCTGCTGGAGGCCGACGGAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //