Array 1 47603-45378 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMW01000019.1 Actinoplanes siamensis strain NBRC 109076 sequence019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 47602 29 96.6 32 ............................G ATGAAACTCGCGCCGAGCCGGGCGGCGGGAAT 47541 29 96.6 32 ............................G GGCGGGAAGACCGACGTGCTCGGCACGTGGAA 47480 29 100.0 32 ............................. GGAACGCTCCCTTGAGTTCGGTCTGATCTCAT 47419 29 100.0 32 ............................. TGATACAGGTGCGCGGGCAGGTCGCGCCCGCA 47358 29 100.0 32 ............................. CACGCATGATCGGTGGGGCTGTAGGTGGCCGA 47297 29 96.6 32 ............................G TACTGCAGGTCGAGGCTCATCGGCTCACCTGC 47236 29 100.0 32 ............................. TTGAATCCGACGGTGACCGCGGTTGTGGGGGT 47175 29 100.0 32 ............................. CGGCGGAGGTCCGCTTCGATGGCCTCCCCGTG 47114 29 100.0 32 ............................. CAACCGGCGTTGGTGCGCGGCACCCCGTCCAT 47053 29 96.6 32 ............................T ACGACAGGCTCGCAGAGATCGGTGGTGGGCAG 46992 29 100.0 32 ............................. GGTTGAGGGTACCTCTGCGGCGGAGCCCATCA 46931 29 96.6 32 .............A............... GCGCCGGCCACCAACATCAGCACCATTTCGGG 46870 29 96.6 32 ............................G GTCACCGAGGCGGTGAGCGACTGATGCGCTTC 46809 29 100.0 32 ............................. CCCGACGTGCCGATGCCGACGCTGACCGTCCA 46748 29 96.6 32 ............................G CTCTTGGTGTCGCAGACGCCGCGGCAGACCAC 46687 29 96.6 32 ............................G TCTCCATCCCCGTCGCGCTGGCCACCGCCGCC 46626 29 96.6 32 ............................T CCCGAGGAACGGATCACCGTTGCGACGGTGCG 46565 29 96.6 34 ...........................T. CCGGCCGGGTCTGGTCCAGCAACAGCGCGCGGGG 46502 29 100.0 32 ............................. TTCGCGCGCAAGACCAACAGCGAGGACCGGCT 46441 29 96.6 32 ............................G ATCATCGCGACCGCACAGTCCTATCTAGGCGT 46380 29 96.6 32 ............................A TACGATCTTCGGTCCGGGACAGCGGGGGGAGC 46319 29 96.6 32 ............................A GGTCACGCCCGCGTCAGCCCCGGTCACGCGGC 46258 29 96.6 32 ............................G CCCTTCTGCCTCGTGATGACGTGCGCGCGCTG 46197 29 100.0 32 ............................. GTCGATCCCGTCTTGATCGCGGGAGCGATCCG 46136 29 100.0 32 ............................. TTCCGGGGCAGATCATCGACCGTCCCGCGCAG 46075 29 96.6 32 ............................G TCACGACGACCGGGGCCGCCGGTCGCACGATC 46014 29 100.0 32 ............................. TCGGCCATCGGCGCGCTGAAGTGGAGCATCCT 45953 29 100.0 32 ............................. ACGTCCAGCACGCCGAGGTGGACCGTGCCCGT 45892 29 100.0 32 ............................. GCCGGAGGCGACAGCGAGCGCCGGGCTGGCCA 45831 29 96.6 32 ............................G CGTCCCTCATGGCGGCCCTGGCGGTCGGTGCC 45770 29 93.1 32 .....T......................T TTCCGGAACGACCTGCTCAGGTGGTCCACCGG 45709 29 96.6 32 ...............A............. CCGTTCAGCGAGGTAGTGGATCGGTACGAGGT 45648 29 82.8 31 .....................TCT.C.G. TGACGGTGTCGCCGGGGATGCCGTTGCGCCG 45588 29 93.1 31 .........................C.A. ATCCTGCGGTCGTTCGCCGAAGACGGCGGTC 45528 29 89.7 32 .................C..AA....... GAGGACGCGTTCGGCGTCGACCTCGGCACCTA 45467 29 100.0 32 ............................. GAGGTCAAGATCGGCGGCGTCGTCCTGATGAT 45406 29 96.6 0 ..T.......................... | ========== ====== ====== ====== ============================= ================================== ================== 37 29 97.2 32 GTCGTCCCCGCACGCGCGGGGGTCTTCCC # Left flank : CAAGTCGTCAAGGACATCAAGGAGCTCCTGCTCGACGGCTCCGACAATGCCACCGAAGAAGACGCCAACCTGCTCTGGGATGAACGCGCGGGTGCAGTTCCGGGTGGCATCAACTGGGCCGGCGACTACGCGGATGACTTCGACGATGACGCGTACATCGGAGTGAGCGGTCCCGAGATCGACGAGTCGCAGCAGGTCGACTGGTGACCGTCATCGTCCTCATCGCCGCCGCGGAAGGACTTCGCGGGCACCTCACCCGCTGGATGATCGAAGTCGCTGCCGGCGTCTTTGTAGGAAACCCCAGCGCTCGTGTCCGGGACCGACTCTGGAACCTTCTCAGCGACCGCATCCACGACGGCCAAGCCATCATGATCGAACCTGCTCGAAATGAGCAAGGCTGGACAACACGGACGGCCGGTCGAGATCGTTGGCACCCTATCGATCTTGACGGACTAATCCTGATGGCGCGGCCACGCCGATAAAGGGCCAGCTCAGCAAGT # Right flank : GGGGCACACAGGGGTTGCATTCTTCGGAATCGGTAGGCCACGTCGTGCAGGCGGGTGTTGCGGCGCAGTTCCCTACTGATCGTAGAGGTCGACCGGCCCAGCACCTCCGCGATCGCACGCGCTCCGAGCCCGTCTCGACGCAGGGTGGCGATCCGTTGCCGTTCCAGCAGCGAGAAGTACCGTCCGCACCGCGCCGCTTCGACCAGCCGGACCGGCGGCACGCCGCCGTGCTCGGCCGGCCACCCAATAGCCGGTCTTGCGGCCGATCCCGAGGATCTTGCACGCCTGCACCGTCCGGAGACCGGCCAGGATCATCCCCCAGTACCGGGTTTCAACGTCCAACCGCCGCTTACGTCCACGTCTCGCCATCAACACGCCGATCATCATGGAGGTTGCGACGAGTACTCGAACCCAAGAACCCAAAGAGGGTCAACTTTCAGAAAGCACTGACAGCGGCATCGCCGAGCAGGTTGCCGTCCTGCCGTGGAAGAGCAACTGAG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57004-57946 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMW01000019.1 Actinoplanes siamensis strain NBRC 109076 sequence019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57004 29 96.6 32 ............................T CGACGACCGCGCGCCGTCCTTGATTAGCGCCG 57065 29 100.0 32 ............................. CGGGAGCCCTTGCGCCGGCCGCTGGCCCACTC 57126 29 100.0 32 ............................. ACCGGGTGTTCACGCAGGCCGGCGCGGAGGCG 57187 29 96.6 32 ............................C CAGCTCCAGCCGCCCGGCCACGGCCCGGTGGA 57248 29 96.6 32 ............................T CAACATCGCGTACGGGACGACCTCGTTCACCT 57309 29 96.6 32 ............................T GACCCCTTCCGCTGGCCGGTCGGACACTCCGC 57370 29 100.0 32 ............................. CGCTTGGAAACCATTTCCATTAGTGATGTCGA 57431 29 100.0 32 ............................. GTCACCGTGTCCGGCGGCGTCGGATCCGGCAC 57492 29 96.6 32 ............................C TTTTCCCCAACGCTGACCGCGCCCGCAGCTAC 57553 29 100.0 32 ............................. TACCCGCTGTTTGTCCTTGACTCCGCGACCAA 57614 29 100.0 32 ............................. TCGAGGGGCCCGCCGGAGCCGTTGGCGATCTC 57675 29 100.0 32 ............................. CGACGGGGGTGATGCCGACCCGGCCGAGAGAC 57736 29 100.0 32 ............................. GCGACGATGGCGGTCGCTCCGTAGCCGATGCA 57797 29 96.6 32 ............................C CAGTCCGCGGAGGGCGCCCAGCTCCAGCGCGA 57858 29 96.6 31 ............................C CGAACCGGATCCAGCGACTGACCAGGGCCAC 57918 28 82.8 0 .......G......T.-T..........C | T [57942] ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.4 32 GTCGTCCCCGCACGCGCGGGGGTCTTCCG # Left flank : CCCGCGAGCAACGCGAACAACTCTCGGCCGCGCCCGGCGCAGCAGTCGTCCAACTGCGAGCGCACCGCCGGAGCCAGGTAGTGATCCCAGATCAGCTCCGCGACAGCGGCGGCATCCAGAAGGTGCTGTAGCAGGAGATTCGGGCTTCCGCCGGCATTCGATTTACCCCACAACCAGCGCCATGCTGCGGTCTCGGGCTCCGTCATGGCGGGCACTCTAGCCAGCCGCACCGACAATTTTAGGGCTGGAAGTCCTGATCATGGATAGAAATGACGGTAGATGCCCGTGCCTTCGCTGGCATGACCTGCGTCGATTCACTCGTCCGGCTTAATCTGGCAGACTTCCTGCTTAGCGCATGGTGCCCCTCGGAAATGAAGCCTCCGATGCTGTCAGTCCGTGCCCAACTGGGACTTGAGTGCTAAGAGTGCCGCGGTGATATGTTCTCGGCTGGACTGCGGATTTTGATGGTTCCTCAGCTGTAAAGCTGCAGTTCAGCAAGC # Right flank : CGCGAGTACGCGCCGCTCGTCCCCGTGCGCGAAGGTGTGTCGGCTGGATCGAGAGCCTCTGGTCCAGCCGGCGGCTGGCAGCGAGAGGTGTGTCGGCTGGGTTGACGCGCCTCCCGGGATCAGCTGAGTGCTGGCGGCTGCGGGTGAGAGGCCTGGTGGGCCGGGGTCGGGCCGGCCCACCGGGTCGCTGTGGTCAGGTGGTTGCCGGTGGGGCGGGGCGGGGTGACTGCCAGCGGCCGCCGGGTGCGAGCTCGCCGAGGTGCTCCAGCCGGGCGCGGACCGCGCCGCTGGTGCGGCCGAACTCGGCGGCCAGCTCGGCCTGGCCGGCGCCCTGGTGGTAGCGGGCGCGGAGCCGGTCGTCGTCGGCCGGGGTCCAGCGGGCGCCGCGGTTGGGCGCGCGGCCGCGCTGGGCCGGGACCTGGGCCGTGCCGGGGGTCGGCGGGCCGGTCATCGCGATCAGGCCGGCCAGGGTGGAGGCGAGCACCTTGGTGAGGCCGGTC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGGTCTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //