Array 1 77045-76812 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815662.1 Streptococcus sp. HMSC067A03 Scaffold81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 77044 32 100.0 34 ................................ ATGAAATCTGCATAAAATCTATCAGACTGTCCTT 76978 32 100.0 35 ................................ ATTTGAATCGCTGCATCCACATCAAACTCAGAAGC 76911 32 100.0 36 ................................ GTGATAAATAACGAATTCTTACAGAAAAAGAAGCAG 76843 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 100.0 35 GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Left flank : | # Right flank : ACCGTTTTTCAACAAAGTTACAATTAAATCAGCTTGTCGCTCCCTTCACGGGGGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCTCCCTTCACGGGGGCGTGGATTGAAATTGGCAGCTGGGCCCGTGTCATTAGCATAGTTACGTCGCACCCTTCGCGGGTGCGTGGATTGAAATATTATTATGTTGCCTTAAAAGAGCCAACCTCTTAGCAGGTCGCACCCTTTGCGGGTGCGTAAATTAATATACACCTAAACTCTTGTTTGCTTTCAAAAACATGCTAAATTTTTCCGAGATATCTTGGCTTTGGATGATGTTAAAATTTTGCAGAAATGTCTCGAGTTTTTGACTGCATTTTGCGAAACTCTCTTACTTGATGGAGAAAATGACCTGTCTAGTGAGAAACTGTACCGAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 137024-137319 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815680.1 Streptococcus sp. HMSC067A03 Scaffold178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 137024 32 100.0 33 ................................ TAGACCTGTTTTTGTTTTAGCACTCATCATTTC 137089 32 100.0 35 ................................ AAGCTGTGAGGCTCGTTTTCATTGAGAAGCATTGA 137156 32 100.0 33 ................................ CTCTTTGCTATCGAACTTTTTGACATAATCTAT 137221 32 100.0 35 ................................ GATTCGAGTAAAATCAAATCGTTGAACTCGGCTAA 137288 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 100.0 34 GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Left flank : TCAAGACAATCCGTGGAGAATTGGAATCCTATCCACCGTTTTTAATATAGGAGCCGGTTTATGATGGTATTAGTAACATATGACGTGAATACTGAGACTGCGCAGGGCAGGAAAAGATTACGTCATGTGGCAAAATTATGCGTTGATTATGGGCAACGCGTTCAGAATTCAGTTTTTGAATGCTCAGTAACTCCTGCAGAATTTGTAGAAATAAAAGCGAAGCTTTTGAGTATAATTGACACTGAGTCTGACAGTATTCGTTTTTATTTGCTAGGAAAACATTGGCAAAATCGTCTAGAAACGATTGGACGTGATACAAGTTATGATCCTGATATAGGGGTATTACTCCTTTAAATAGTCTAGTGCGAATAGTTGTTGCTCATAAAAAAGCAGGACTTTCGCGTAAAAAATAAACAAAAATAAGGCAAAAATTCGAAATTTTAGAAGAATTTACTTTCCTCGAAAGATAATTTTTGCCTAAAACAGTGCAATTATGCGCT # Right flank : TTCACTAATAGGCTCATGAGTTATTGAGGTCTTAGCGTCGCTCCCTTCACGGGGGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCTCCCTTCACGGGGGCGTGGATTGAAATAAGGATTAGCTGGAAATTTCAGTCAGCAAAACAAAGTCGCTCCCTTCACGGGGGCGTGGATTGAAATTAAATTTTTGATAACCTTGACATAGCCTTTTGCGTCGCTCCCTTCACGGGGGCGTGGATTGAAATCTACGCGCGGTTTTGAACTTATCTGATGACCAAAGTCGCTCCCTTCACGGGGGCGTGGATTGAAATCCGTATTCGTCGATCCAATTTGTTTTATTTTTTGTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 137553-137780 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815680.1 Streptococcus sp. HMSC067A03 Scaffold178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 137553 32 100.0 33 ................................ TAAATTTTTGATAACCTTGACATAGCCTTTTGC 137618 32 100.0 34 ................................ CTACGCGCGGTTTTGAACTTATCTGATGACCAAA 137684 32 100.0 33 ................................ CCGTATTCGTCGATCCAATTTGTTTTATTTTTT 137749 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 4 32 100.0 34 GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Left flank : AATTAGACCTGTTTTTGTTTTAGCACTCATCATTTCGTCGCTCCCTTCACGGGGGCGTGGATTGAAATAAGCTGTGAGGCTCGTTTTCATTGAGAAGCATTGAGTCGCTCCCTTCACGGGGGCGTGGATTGAAATCTCTTTGCTATCGAACTTTTTGACATAATCTATGTCGCTCCCTTCACGGGGGCGTGGATTGAAATGATTCGAGTAAAATCAAATCGTTGAACTCGGCTAAGTCGCTCCCTTCACGGGGGCGTGGATTGAAATTTCACTAATAGGCTCATGAGTTATTGAGGTCTTAGCGTCGCTCCCTTCACGGGGGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCTCCCTTCACGGGGGCGTGGATTGAAATAAGGATTAGCTGGAAATTTCAGTCAGCAAAACAAA # Right flank : | # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 44783-44950 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815682.1 Streptococcus sp. HMSC067A03 Scaffold196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44783 36 100.0 30 .................................... TCCGATTCCTGTTTTAGTCAATTCAGCATC 44849 36 100.0 30 .................................... AAACAAGCTGCTAAAGTACAATTCTTTGTC 44915 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 96.3 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GGAACAACTAAACGAGAAACCAGAAGTCAAGTCCATGTTGGATAAATTAGCTGCGACTATTACGGAGCTGATTGCCTTTGAGTGCTTAGAAAATGAATTGGATTTGGAATATGATGAGATTACGATATTAGAACTAATTGATGCTTTGGGAGTCAAGATTGAAACGGCTAGTGATACTGTGTTTGATAAAAGTTTAGAAATTATTCAATTTTTTAAATATTTATCGAAAAAGAAGTTGCTGATTTTTGTGAATGTATCGGCTTACTTTTCTAAAGATGAATTGGTCAAATTAATCGAATATATTGAATTAAATAATATCAATGTTTTGTTCATAGAGCCAAGGAAAGTTTATCAATTTCCACAATATGTCTTGGATCAAGACTATTTTTTAAACTGCGAAAATATGGTATAATAAAAGAAATAGAGAATCATTCGAGCTGAAGTCTAGCTGGGATGAATGGCGTGATTACGAAATTTCGAGATAAAAATTGGTCCACGAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTGTTAAATGAATAACTTGACCATCGTCATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCCGATTCCTGTTTTAGTCAATTCAGCATCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATATTATGTGGTTATGTAAACAAAAAAAGAGTTTTAGAGCTGTGCTGTTTCGAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATGGAAATTTTTAAAAATTTCCGCTCTAAAGTTTTAGAGCTGTGCTGTT # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 45044-45211 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815682.1 Streptococcus sp. HMSC067A03 Scaffold196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45044 36 91.7 30 NNN................................. TTGTTAAATGAATAACTTGACCATCGTCAT 45110 36 100.0 30 .................................... TCCGATTCCTGTTTTAGTCAATTCAGCATC 45176 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTACTTTTCTAAAGATGAATTGGTCAAATTAATCGAATATATTGAATTAAATAATATCAATGTTTTGTTCATAGAGCCAAGGAAAGTTTATCAATTTCCACAATATGTCTTGGATCAAGACTATTTTTTAAACTGCGAAAATATGGTATAATAAAAGAAATAGAGAATCATTCGAGCTGAAGTCTAGCTGGGATGAATGGCGTGATTACGAAATTTCGAGATAAAAATTGGTCCACGAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCCGATTCCTGTTTTAGTCAATTCAGCATCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAACAAGCTGCTAAAGTACAATTCTTTGTCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CATATTATGTGGTTATGTAAACAAAAAAAGAGTTTTAGAGCTGTGCTGTTTCGAATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATGGAAATTTTTAAAAATTTCCGCTCTAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGCCAACAAATGTATTATTTATTAGTACTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAATCCCAAAATCGCTTGGGCGGTTTCAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGA # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 46079-46312 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815682.1 Streptococcus sp. HMSC067A03 Scaffold196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46079 36 100.0 30 .................................... TGTTTTTAGCGGCTGCTATAACAATCAATG 46145 36 100.0 30 .................................... CAAGAACAAGGTTGATTTTCAGGAATACAC 46211 36 100.0 30 .................................... TGTTTTTAGCGGCTGCTATAACAATCAATG 46277 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GTTTCGAATGGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGAATGGTTCCAAAACAACTATCAGCTGTCGTCAGATTGTGAATTGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTCCGATTCCTGTTTTAGTCAATTCAGCATCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGATAATACTTTCTTCTGTATCAAATTTATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGTGCACTTTTCATCGGTGCACCACCTTTC # Right flank : CTGAGCTATTGGGAAAGTATACCCCCTCTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGAATGGTTCCAAAACAACACCAAGATTCATCCGACCAGAATTGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGTTTTTAGCGGCTGCTATAACAATCAATGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATCATCCTGTTTAACATGGTGGCAAAACATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGCTTGTAGCGTTTATAACGCGAGTATGACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 46534-46701 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815682.1 Streptococcus sp. HMSC067A03 Scaffold196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46534 36 100.0 30 .................................... TGTTTTTAGCGGCTGCTATAACAATCAATG 46600 36 100.0 30 .................................... ATCATCCTGTTTAACATGGTGGCAAAACAT 46666 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GAATGGTTCCAAAACTGTGCACTTTTCATCGGTGCACCACCTTTCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGTTTTTAGCGGCTGCTATAACAATCAATGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAAGAACAAGGTTGATTTTCAGGAATACACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGTTTTTAGCGGCTGCTATAACAATCAATGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGAGCTATTGGGAAAGTATACCCCCTCTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGTGCTGTTTCGAATGGTTCCAAAACAACACCAAGATTCATCCGACCAGAATTGA # Right flank : CTGCTTGTAGCGTTTATAACGCGAGTATGACGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACGTGGCGGAAGCATTGGAAGTTTAGCTACAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGACCTATTCTTTTCTTCCAAATTCCCAAAAATTCAGACACAAACCATCTGATTGTAAAGCTTGCAAATTTTTTTAATCGTGCTATAATATTTCTTAGAGACATACCGCTGGTTGGAATTTTTTAGAGAACGCGTGGGGCTGGAAAACGTGTAGAGGAAGGCAGTTGGGACTACTCTAAAGTAACTTTTATGCAAACATAAAACGGTGGCTACGTTAAAGCCAGTCTGAGGTGTAGGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //