Array 1 46277-44777 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAKN01000005.1 Neisseria meningitidis strain Neisseria meningitidis isolate 23012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 46276 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 46210 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 46144 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 46078 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 46012 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 45946 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 45880 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 45802 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 45736 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 45670 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 45604 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 45538 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 45472 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 45406 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 45340 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 45274 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 45208 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 45142 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 45076 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 45010 36 100.0 30 .................................... CAAAGCTGCGGTATGTCGGGATTGTCTTCA 44944 36 100.0 30 .................................... GTTGCACTATTATTCATTGCATCATCATTA 44878 36 100.0 30 .................................... TGCGGTTTGCAACCAAACGCATATATTTTT 44812 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 23 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //