Array 1 6117-6511 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCXJ01000002.1 Pseudomonas aeruginosa strain 146 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6117 29 100.0 32 ............................. TGGATGGATTAACGCATGGCTGGAAAGGTGCC 6178 29 100.0 32 ............................. AATGGGTGTCAGGTTGGACTCTAGGGTTATGC 6239 29 100.0 32 ............................. AACGACGAATGGGCGCCACACGTGCTCCGCCG 6300 29 100.0 32 ............................. AACGGATGCGGCTGCGATCCCTTCCGGCGTGA 6361 29 72.4 32 .A.......ATCG.A..........G..A ATCGCAGCGGGAAAATTCCCTGCGGCCTTACC 6422 29 82.8 32 A.A........GC.A.............. ATTCAAGATGGCTGTAATGGTGGTCGCTTGCA 6483 29 69.0 0 CGA.A......G.GA..........C..T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 89.2 32 GTGTTCCCCGCATACGCGGGGGTGAACGG # Left flank : ACAGATCCCTAACCAGATGTGGATGCAGACTGGCCGGCTGAGCATCGTCGAAGCGGCGCGGCATCGGCAATCTGGTTACCTGCAGCTGCGAGCAGGCAAGCCAAATCCTGCTGGCGGTCCGTTCAAGACATCCATCTATCACCGGCCCATTGTCCAGGCCGAGCTGACAGCTTTTTGTGTTGGGGATCAGCAAGGCATTGAGGCGCTTCTCAGCGAGTGCCGCCAGATCGGCGGTAAACGAGGTGTGGGGTTCGGCCAGGTGGCGGGGTTCAAAGTGGAGCCAGTAGCCGAAACGGACTGCCCCTGGTCTTGGCGAGCATTGCCGGCAGATGCTGACCCCCGATTGGTTACGTCAGAACACGCCCGCTGTATTGCCGCAATTCGGGGGCCGTATTGGGATCGTACCCTGCACGTTGAGGCGCTTGCGCCTACCCCTTAAGGGCTTGATGAAAAAGCCCAAGATATGGTGGCTTGGAGTAAGCATGCTTCCATATCTTGGT # Right flank : TCAGTGTAATCGAACCCTATACCGCAACTTCCTGAGCTTCCTCATTCTTGGGGGTAACCTAAGGAGACGCTGATTTATTCGTCTCCTGCCACCCATCTTGGCACAATCCGCTGAAGTCCGCCGCACGAGTTGCCCACATGCAAAAAACCTTTTCCGAAGCAGAATACGCCGGCAAGAAAAAGCTGACTCGACGCGACCGGTTCCTCAACGAAATCGATCAACTGGCCCCTTGGGCGTTGCTGGGAGCCCAGATCGCGCCGTTCTATGCCGACAACACCGGCAAGCGCGGCAGGCCCAGTATTGGCTTGTCACGCATGTTGCGCCTGTACGTCGTGCAGCAATGCTTCGGTCTTTCCGAGCACTTCGGCATGAAGGCGCACATCGGCGTGGATGCTGCGACCGGTCTGGTGCATAGCCTGGTGACCACCGCAGCCAATGTTCACGATGTAACGCAGGCCCATGCACTGCTGCATGGCGAAGAGAGCACTGTGTTTGCCGAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGGTGAACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6521-5759 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCXJ01000007.1 Pseudomonas aeruginosa strain 146 scaffold_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6520 29 100.0 33 ............................. GGCACCATCGGCGCCATTGACCGCGCGCTGAAG 6458 29 100.0 32 ............................. ACTTGACCGGGCCGAACTCCATTGCCTCCTTG 6397 29 100.0 32 ............................. GATGGCAACCGGCGTTTGTCCGCGCTGAACTG 6336 29 96.6 32 ............................A GCCGCTGAGCAGCACCTACCGGCACCTGAAGA 6275 29 100.0 32 ............................. GTAAAACTCGGCGATGCGATCCGCGAAGTCGC 6214 29 100.0 32 ............................. CCGACAAGGTGGCGAAAATCGCTGCTGAGTAC 6153 29 100.0 32 ............................. TCACGATCACTGCTGAGAACCCCAACCACACC 6092 29 100.0 32 ............................. CATCTGGCCGGGGCTCGGGTCTGGTTCTACGA 6031 29 100.0 32 ............................. TAGTAGAAGGGGCTAAACCCAACTGGTCAGGT 5970 29 100.0 32 ............................. GTGTTCAGCCTTGCACCGAACACCGTTAGCAA 5909 29 100.0 32 ............................. AGGCCCGCATCCGCGAGCTGATCGCCGCCGGC 5848 29 100.0 32 ............................. AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 5787 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16271-15692 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCXJ01000007.1 Pseudomonas aeruginosa strain 146 scaffold_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16270 29 100.0 32 ............................. TGAATTGGCTGAAGGGTGGCCTCGGCTCATTG 16209 29 100.0 32 ............................. GTGCTCGTGCCGGACGCCACTGGCGAGGTCAC 16148 29 100.0 32 ............................. CATCCGAGGGATTCACCAGCCAGGCCATCATC 16087 29 100.0 32 ............................. GACCGCAGTTGATCGAGCCTCAGCGCTCGGCC 16026 29 100.0 33 ............................. TCTTGGCGGGGCATTGTGCAGTGGATTGCCGAT 15964 29 100.0 32 ............................. CAGACCAAGGCGCCGCCGCTGATCGTGCCAGC 15903 29 100.0 32 ............................. CTCGCGGACAACACCCCGAACCCCTACGTCGG 15842 29 100.0 32 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 15781 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 15720 28 79.3 0 A..........A..C.....-..A....T | C [15711] ========== ====== ====== ====== ============================= ================================= ================== 10 29 96.9 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAACATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCATG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //