Array 1 4868-6996 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZB01000290.1 Xanthomonas fragariae strain JVD-0047 isolate JVD-0047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4868 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 4928 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 4989 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 5049 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 5109 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 5169 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 5229 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 5289 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 5349 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 5409 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 5469 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 5529 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 5589 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 5649 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 5709 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 5769 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 5829 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 5889 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 5949 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 6009 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 6069 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 6129 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 6189 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 6249 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 6309 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 6369 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 6429 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 6489 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 6549 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 6609 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 6669 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 6729 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 6789 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 6849 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 6909 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 6969 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGGCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACGCCAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 309-515 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZB01000315.1 Xanthomonas fragariae strain JVD-0047 isolate JVD-0047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 309 28 96.4 32 ...............C............ TTACCAAGCAGGTGCACCAGAACTGCCCGCGT 369 28 100.0 32 ............................ CATTTGATTTTAATGGACTCAACAAGCCTCTC 429 28 96.4 31 .............C.............. TATCGTCGCGCCACGCATAGCAGACCGGTGC 488 28 82.1 0 A..........TC........G..T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GCGCTCCTCGGTCACTCGACGCAACTCTGCCTTCAGCCGCCGAACCTCGGCGCTCTGGTCCACCTCGGCGCGCTGCACCACGCCAGGCTTGCCGAACTTGCGCAGCCAGGCGTAGAGGCTGTGCGTGGTGAGACCCAGTCGCTCCGCGACTTCTGCCACCTTGAAACCACGATTGGTCACTTGCCGGACCGCCTCGATCTTGAATTCATCCGTATACCGCTTGCTGCTCATGGACACCTCCGAATTGACCATTTTCCATGGCCTTGAGATGTCTAGGAAACCCTGGGCGTATCATGTGTAGTAGTTAGG # Right flank : ATGCGACCGGCCCGTCCACTCTCGCGCTGTATTTGCCACGACTGTCGCGTCTCATGGACAGGCGACCTGCAGTGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTTAACCGCGCGCGCATTGGAAAGGCATGTTTGCGCAGGCGTAGCAGTGTACGACGCGTGACGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCACTGCGATAAAGCCACGCCGCGCGCATCACCCGCGCGTGCACTCACTTGCGCCAGTAAAACCCCAGGAACATCGCCACCGCCGATTCGGCCATCTGCGTCTGTTGCTCCGGCGACAGCGGCGGCTGGCCCGTGGCGAGCTGCGGCCAGAACGCGAAGCCCTGCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTGCGGCTCCACGCTTGCGAGCCGCCCGTCGGCCAACGCAACGCGTCGCCAGGTGGTGGTTCCTTCCTCCTTGCTGCCCAACG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //