Array 1 430259-431701 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOWX01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain G118 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 430259 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 430320 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 430381 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 430442 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 430503 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 430564 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 430625 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 430686 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 430747 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 430808 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 430869 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 430930 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 430991 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 431052 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 431113 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 431174 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 431236 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 431297 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 431358 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 431419 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 431480 29 100.0 42 ............................. NNNNNNNNNNTTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 431551 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 431612 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 431673 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 24 29 98.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAACAAGGATAGCCGTTGCATAATNNNNNNNNNNCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 447903-449883 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOWX01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain G118 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 447903 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 447964 29 100.0 42 ............................. NNNNNNNNNNTGAGCAACGACAGTAAATAATTTTTCGTGCTG 448035 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 448096 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 448157 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 448218 29 100.0 89 ............................. CCATTATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTCCAGGCTCGCGCCGGCT 448336 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 448398 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 448459 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 448520 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 448581 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 448642 29 100.0 42 ............................. NNNNNNNNNNCGTCGCGGAAAATTTCGCATTGACGATAAAGA 448713 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 448774 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 448835 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 448896 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 448957 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 449018 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 449079 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 449140 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 449202 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 449305 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 449366 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 449427 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 449488 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 449549 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 449610 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 449671 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 449732 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 449793 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 449854 29 96.6 0 A............................ | A [449880] ========== ====== ====== ====== ============================= ========================================================================================= ================== 31 29 99.6 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //