Array 1 27498-26676 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFH01000155.1 Ligilactobacillus equi DSM 15833 = JCM 10991 strain DSM 15833 NODE_351, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 27497 28 100.0 33 ............................ TGTTAAATTCGACAATTTAGGTACTCAGCCAAG 27436 28 100.0 33 ............................ CGTCCAAGCTTATCTTGAAATGCCTTAGCTGCT 27375 28 100.0 33 ............................ CTCAAGCTGGTCTTCCTCGAGCGCCCTTTTTTC 27314 28 100.0 33 ............................ TAAAAGTGGCCACGGAGGATTAGGCGGTAATAA 27253 28 92.9 33 .......................G.A.. TTCTCGTTTTGCTGGTGGGGCGGACATGGGTTC 27192 28 92.9 33 .......................G.A.. TTAAAGGTTGGGAAGAAGAACTAAGGACGGGAA 27131 28 89.3 33 .................G.....G.A.. TGCAAATGTCCCTGCTCGTCCAAAAGACGCCCA 27070 28 100.0 33 ............................ TATATATACATTCAAACCTTGATATTAGCAATT 27009 28 100.0 33 ............................ TGGTGCAGCTGACAAGACTAACCAAGTTAAGAC 26948 28 89.3 34 ..........T............G.G.. TGATTAGTAATGGTATCTTGGTTGCTCTTGATAG 26886 28 85.7 29 ...............A.G.....G.G.. TATATGTTCAAACCTTGATATAGCAAGTA G [26864] 26828 28 82.1 40 ........C.....C..G.A...G.... GTAGGTGAGGGTAAACCTGTAACACCGGGGTGTACGTTTC T [26802] 26759 28 75.0 26 T.A.......T.CT......T....C.. ATAGATACTATGGATACTATATTTTC G [26736] Deletion [26706] 26704 28 78.6 0 T.........TT........T..G...T | G [26678] ========== ====== ====== ====== ============================ ======================================== ================== 14 28 91.8 33 GTGTTCCCTACGTATGTAGGGGTAATCC # Left flank : TACTAAGTGAAGAAAAACCTGATTTGGATATTTTAGAAAGTCATGGTATAAAAGGAACTGGAATTATTAAGGAATATGATAAGTTGCTAGACACCATTAAAATAGATTCAGTATTAAAGTTTCGCTTAACAGCCAATCCTGTACGCCAATTTAATGGAAAAGCATATCCTCACGTTACCGTAAAACAACAAAGAAAGTGGTTGTTAGATAGAGCTGAAGCTAACGGCTTTACGTTAGATGATAATTACTTTACAATCGTTAGTCGTGATTATGTTCCATTAAAACGGAAAAATAGCAGAGGTTGCAATTTAAGTCGGGTATCTTTTGAAGGTATTTTAAAGGTAACTGATGTTGATAGCTTTAAAGATATATTAGTTAATGGCTTAGGGAGAGAAAAGGCGTTTGGTATGGGACTCATGACTGTTGTCCCATTTTAGCAAAGTAACTAAATTTTATCTAGATGTGTTAGCAAGATGTTGACAAATCAATGTTTTTTTAGA # Right flank : GTAGAAGTTATTGAGGTTATCCAAAATTAAATAAGTAGTGCATTTCTTATGTACATTCGCATAAGAAACAAGAAACTTTTTTCAATAATGATATTTTGTTCTTTTTTGGCTACAATAAAGATTGAAATTTATTGACATTTTATCATTTTGAATTATAATTAATTTTAAAGAACAAAAACTTATAATTTAAAACCACAAAAAAGAACAGGAAGTGAGTGGAATCAATGGTTGAAACTACGTTAAAGTCAAATATTGGCTTATCCTTGTGCGCATGGCTTGATTATTTGATTAGCAAGGGGATGATTTCTCGCAACAATAGAGATTATTTATCTGATGTGATTTTAGAAATGGTATCAATGATGGGTTTACAAAAAAAGCCTGATATGCCTGAAAAAACACATATTATCAAATATCAGTACACCGATGATGTTGCTAAGTATAATGAGCATCAAAGAGAAGAGTTTTTAGCAAGTCTTAATCAGATTGGTTTCAACAATCAG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTACGTATGTAGGGGTAATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [29-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 28667-28330 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFH01000155.1 Ligilactobacillus equi DSM 15833 = JCM 10991 strain DSM 15833 NODE_351, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 28666 29 96.6 32 .........................A... CAAGGTCTAAGAAAAGACCGACGCTATAAAAC 28605 29 100.0 32 ............................. GACAGTCATACTAAAAGTTATAGAAGGGAGGG 28544 29 96.6 32 .......................A..... GCTGAGTACATTATTGAACAAGTTGATGAAGG 28483 29 86.2 32 AA...T.................A..... ATCACTCCTGCAGCGGTTCATAATTTCAAGGA 28422 29 89.7 34 .T.G....C.................... GCTGTGTTAATACTGGGGGAAACTGCAGATTCAG 28359 29 72.4 0 TTG.......T.........T...G..TA | C [28332] ========== ====== ====== ====== ============================= ================================== ================== 6 29 90.2 33 GCATTCCCTACGTATGTAGGGGTGATCCT # Left flank : ATCGAGACTATTTGCAAGATACAGTATTTTTAGTTGCTATTAGCAGTGAAGATGATGAGTTAATTAATACAATTCGTCATTCACTAGCTCATCCCAAATTTCAACTATTTCTCGGTCGACGAGCAAGTGCTCCGGCAGGCGTTTTAAAGACAAGTATTTTTCCAAATATGACACCAATTCAGGTCTTAGAAAATGAGTCTTGGCAAGCAGCAGATTGGTATAAAAAACGTTTGAGAAAGTCTGAAGTAGCCTTAAAAATAGTAGCTGATGTTCAACTACTAAAAGGGCAGAAATACAAAATTTCTAGAGATACAGTTATCTCATTTTCTGAAAAAAAGCGAAAACATGGTTATCGAGGAATTGCAACTAAAACTGTTAAAGTTGCTAATGATAAGTATGTTGCTACTTCAACAAAGCATGATCCGTTATCGTTTTTTGAAACTGAAGTAATCGCGACAAAGTGATGACGAAAAACATTGATTTGACAATGTTTCTTTAGT # Right flank : TCGGCTTTTTGCGTGTTTCTTAAATGATGTTCCCTACTGTTATGGGTGTTTTCCTGTATGTGTCTTCCTGTGTTCAAGGGCGATATTAGCCTTGTATATTTGAAAGTTGTTTCCTACTTTTATTGTAGGAGTTTTATAGAAAGGAAAAATTATGTATTATTTATCACGAGTAGAAATTAACAATAAGAATGCAAAAGAAATTAAAGAATTCAACCACTTAGGTGCTTACCATAATTGGGTAGAGCAAATGTTTCCTGAAAATATTGAAAATGGTGTTCGCCCACGTCATTTATGGCGTATTGATATCTTAAATGGTGTAAAATATCTATTAGTACTAAGTGAAGAAAAACCTGATTTGGATATTTTAGAAAGTCATGGTATAAAAGGAACTGGAATTATTAAGGAATATGATAAGTTGCTAGACACCATTAAAATAGATTCAGTATTAAAGTTTCGCTTAACAGCCAATCCTGTACGCCAATTTAATGGAAAAGCATATC # Questionable array : NO Score: 3.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATTCCCTACGTATGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 44483-43664 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFH01000155.1 Ligilactobacillus equi DSM 15833 = JCM 10991 strain DSM 15833 NODE_351, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44482 29 96.6 32 ............................C GGAAAGAGATGGCGGAGGAGGAAAAATTATGA 44421 29 96.6 31 ........................T.... CGACTGGCGCTGTCAGCTGGTCAAGACGTCA 44361 29 93.1 32 ........................G.T.. AAAAAGTTTGTCAATAAACAAAAAGCATTTCA 44300 29 82.8 32 .....T....T.............GCT.. GGTTGCCAAGGAGGAAAGTGATGCAAACCGAT 44239 29 100.0 33 ............................. TGGTCCACGTACGTTTGTTGTCTGTAACCTCTT 44177 29 100.0 32 ............................. TGTTGTGCCTGCCAGCTAGAAACTGCGTTCAG 44116 29 89.7 32 ........................GAT.. ATTGACTTCGTTATAATTCTATTTTTCCTATA 44055 29 96.6 33 ............................C ATGCTACAAGCTTTATGAGTAACCAACAAGGCG 43993 29 96.6 32 ........................T.... TGATAAGACAACAAAAGTGACTGGCAAAGGAC 43932 29 93.1 32 ........................GA... GTCTTCTGCGAGATGAACATGGTCTTTGTGTG 43871 29 82.8 31 .......T..T.............GAT.. AGACCTAAACGATTAATCGCTTGGGTATTGC 43811 29 79.3 30 ..........T..GCA........G.T.. GGTGAAGAACAGCATAAAGCAATTAAAAAG 43752 29 75.9 32 ..G.......TA.G......T...GG... GTCAGCTCAAAACTCTAGCAATCATAAAAAAA 43691 28 72.4 0 ..........TACG.A......C.C-... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 89.7 32 GTATTCCCTACGTATGTAGGGGTGATCCT # Left flank : CTATATAGAAAAACTAAGCACCTTACCGTTAAAATATGAAACTAACAACATCATCTTTATTCACGCAGGAGTTCGGTTAGACGGTCAAGAAACAGATCAAGAGTTTGCTTTGTGGTCTCGGGAAGATTACTGGTATATTGACCGCCAAGAACATGATTATGTTTTTGCTCACAATACTACTGGTAAAACAATTGTTACAGGTCATACGCCAACTTGTATGTTATCAGGCGTCTATGAGCAGCCATTCCCAAAGGCAAATCCAGAAGGGGTTATTCTAGGTGACACTAATACTTACCAATGTCCTGTAAAAATCGTTAAGTATGATGGTGAACCTGCTCGAATTTTTACTGACGGCGGATGCCACGCTCGATTAGACGGGCATCATGGTAATGTAGTCGTCTTAGATGACAATGGGGCATTAATTGATATTTTCTCGTGAAAGTTAATGATTTTTGGATAGATTGTTCGTCAGAATGTTGGCAAATCGATGTTATTTTAGT # Right flank : ATTGGGTCAAAAACACGACTGCTTATGTCGAGTAATTGCTATGATGTAGCGCATCAATCAGAAAGGATTTTTTTAAAATGGTAAATACTGAATATTACACACGAAATAATCAAACAACAATGACGGATAAAGACTGGAAAAAATTAATAAATTTAGTAACTGGGATGGAACAAGATTTATCAAGAGTAGGTGTGTCTGTACCTAGTTCTTCTAAGGTTCATAATATCAAGAAATCTAATAAGACACGTGATTTTCTCTTAAAAAAGCAATTAATTAGTATTGATTGGAATGGCGGCTATGTTATCTCACATAAGGCAACACCAGCACAAAAAACATTAATTCTTAGGGCAATTAATAATATGTTTGCCCTGCAATAATCTACAATACCTATTGACTATGCTTATACGCTTAGTTTGCAACAAATACTAACGAGAAGGAGGAGGCTTTAGATGACAGATAAAGTTATGGGAAAAATTGCTAAGATTACTTTTTCAAAGGGC # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCTACGTATGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38860-41031 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFH01000198.1 Ligilactobacillus equi DSM 15833 = JCM 10991 strain DSM 15833 NODE_611, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================== ================== 38860 29 100.0 32 ............................. AAGACGAAGAAGGACGCCCGCAAGTGGCTCAC 38921 29 93.1 32 G........T................... GTTCTAAGCTCTATCAAGATATCAACCGAGGC 38982 29 100.0 32 ............................. ATATCTCTCAAACCGAGTCAACGATAACCAAC 39043 29 100.0 32 ............................. ATTTTCTATGCAGGAAGTGTAAGGAAAATAAC 39104 29 100.0 32 ............................. AAAACTCTACTCTATCTTTTTTCTCCATCATA 39165 29 100.0 33 ............................. AAAGGACACGACATGAAAATTCGCTTGCGGTAT 39227 29 100.0 33 ............................. CAAGGACACGACATGAAAATTCGCTTGCGGTAT 39289 29 100.0 32 ............................. TTGACCAACTCACCCTTAAACTTAGGGAAAAC 39350 29 100.0 32 ............................. ATGATTTGATCACAAGCATAAAAGGCATTGTC 39411 29 100.0 32 ............................. CAATTCAATAGTACTATTAAATTCGTGCAATA 39472 29 100.0 32 ............................. TCCCCGACTATCACGAACGGCCAAGTAACCGT 39533 29 100.0 32 ............................. ACGACTTGGAAAGCTTGAAGAAAGCCACTCTG 39594 29 100.0 32 ............................. TAGTGCAAGTATTGCAAATTACGTCAACACAT 39655 29 100.0 32 ............................. ATATCTCTCAAACCGAGTCAACGATAACCAAC 39716 29 100.0 32 ............................. AATCAGTCTTGGTAATGTGTGGTTTAAGTTTT 39777 29 100.0 33 ............................. GCTGTTAATCCTAACTTTGCAACTTCCTGCTTT 39839 29 100.0 32 ............................. CACCAATTTCTCCGTATAACCCAATATCTCCC 39900 29 96.6 32 G............................ AAGATTTCTTAAAAAAGTTAGCTGACAAGCTA 39961 29 100.0 59 ............................. ATAATCTTATCTCCACGTGTGAATAGTCCTCTAGCCTTGAGAGTGTTAGGTGTCCATCT 40049 29 100.0 33 ............................. TGAGTGCGATAGCCGTCTTGAAATAGTTGTAGC 40111 29 100.0 67 ............................. GCTGTTAATCCTAACTTTGCAACTNNNNNNNNNNTCCCAACCCTTTTGTAGTCGGGTCGTTAAGAGC 40207 29 100.0 32 ............................. AAAAAGTATTTTTTTTGTTTATTAGTGGTATT 40268 29 100.0 33 ............................. ACTATAAAGATGTGCTAAGAGATAAGCTAATAA 40330 29 96.6 32 .C........................... ACAACGGAAAGACTAACAAGGAGGGTTCTATA 40391 29 100.0 32 ............................. TAAGTCAGGAAGAGCGGGTTATCAATGCGAAC 40452 29 96.6 32 G............................ AGTTAAGGAAGAGCTTGCCGAAGCCAAAGCTG 40513 29 100.0 32 ............................. TCTCTTTGCTAGCATGATAAAATCAAACGATT 40574 29 100.0 32 ............................. TGGTTATTTACTTCTTGATTGTTGTTCTCGTT 40635 29 100.0 32 ............................. CAAAATTAATTCTACACAAAGACCCTCTCATC 40696 29 100.0 32 ............................. CCTGTAATAATCGTGTTTCCGACGAAATCGAT 40757 29 100.0 33 ............................. ACTATAAAGATGTGCTAAGAGATAAGCTAATAA 40819 29 96.6 32 .C........................... ACAACGGAAAGACTAACAAGGAGGGTTCTATA 40880 29 100.0 33 ............................. TAACGTAGTTGGTCGTATCAAATATCCTTTCGC 40942 29 100.0 32 ............................. TCTTAGTTTTAATTTTTGGGAACCGCGACTTA 41003 29 96.6 0 T............................ | ========== ====== ====== ====== ============================= =================================================================== ================== 35 29 99.3 34 AGGATCACCCCCGTACACACGGGGAACAC # Left flank : TTTGATATTAGCAATCACATTATCTTAAAATATGACAACCGGTGCACTTCAATCCATTATAAGTGCCAATTTAATCAGAAAACAATGGAATTAGAGTTCTTGTGAATCATCCACCATGCACACAGGGAATACGTAATCTTATCTCCCTTAGTCACGTTCATACCAGAATCACCCCCATACACACGGGGAACACTAACACCCCGTTATAAATTACAAGCCTTTTTCTAAAATTCTCGCAATTTATTTTCAAGGCTAACTTTAAGCTCTTTCAAAAACCGCTGATAATCTTCACGGTTCTCGTTGATTTGCCTTTCAGCAACGCTTCCAGGCTTTGGGTCAACGAAACTGAACGCTGACCGTTTCAGTTTCATGAATCCGTTTCTATCCGGATTCTTTTCCTCCCATTTGCGAGAGGCTTTTATTTGTGATTTTGTCACCATAATTTATTCCTCCTTAGAAACCTTTGACTTTTGTTTCTCCTACTCTAGTTATACTTTCGC # Right flank : CAGTAAACAATCCTTTACATAACAGGGATTTCAAATCCTAAGTTTTCCATTTTCTATTAGTTTGAAAGCTAACTCTAGTGTCGCCTTTGAATCCTCAAGGGCATTATGTGGAGATCTATTTTCTATCCCATACTTATCTAAGACAGTTTCCAAACGATAATTATCTAAAAAAAGTTCCACCTTCTTTACTCGTGGCATTAAATCTATAAACCTATTTTTTAATGGTGACTTATTAGTTTTTTCTAAAGCGCCCTCTAGGAACTGCATGTCAAATTTGAGATTATAGCCAATAATAGTGTCATCACTTAAAAAAACTAACAAATCATCCAAGACATCACTAAGGTCTTCCCCTTGTTCTTGAAGAATTTCATCGTTAAGACCTGTTAGTTTTGAAATGACATGAGGTATATTACCTGATATCTTTATATATCTAGAAAATATCTCCTCATCATTTCCTACTTTCTTTACAGCACCAACAGCAATTATCTCTGAGGACAATG # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGATCACCCCCGTACACACGGGGAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //