Array 1 82617-82449 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831865.1 Neisseria sp. HMSC064F03 Scaffold45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 82616 36 88.9 30 NNNN................................ TTGTCTGTGTAGTTCCCAACCTTGATACTG 82550 36 100.0 30 .................................... GAGTGTCATTCTGACCGCCGATATAAACTT 82484 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 96.3 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTAATATGAAAGCACTACCTGTTTAGGTAGTGCTTTTTTATTTGGATAGCTCTTTCTCATTTCGCAGTGCTACAATTGCCGAAAGGCAAAGGGATACGCGCCGAATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACTTCAACGGAAAACCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGTCTAAAAAAGCAGTCTTAAAATAATAATAGCTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAGCCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACAGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCAGCTTTGCGCTTGGCCGCTGTGGTAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTTAATGGCAAGATTTCAGGCAGCTTCAGCTGTTTGGCATTTTTGTTAGTTACGCTGACTTGAAATGAAGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.00%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 1 102650-102430 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831915.1 Neisseria sp. HMSC064F03 Scaffold949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 102649 33 97.0 33 G................................ TGCTATCGCATATCCTTTTATCTTTCGTGGATT 102583 33 100.0 20 ................................. AACGAAGCAGAATTTAAAGG Deletion [102531] 102530 32 81.8 34 .A....G.TG..-..C................. TCCAGCAACTACGAATTCTATGCAGACCTATTCC GT [102513] 102462 33 69.7 0 GT.....A...GAA..T......A....C...T | ========== ====== ====== ====== ================================= ================================== ================== 4 33 87.1 29 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTGATTAAAACAAACATCAGCAAAAACATTATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTTTATCAAGTCTGCTCATTTTCTTACTCCCAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCACGTGGCAGGCGGGCAGGAAATAAAAGCCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTATCTGTACGGTTAAGACTAAACCTAAAGAT # Right flank : ATCGTCCAAGCAGGCCACTTTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCAGTGGAGGATATTAGAAGCAAGTTATAAAGATTAATAAATGACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTCTATTTACATGTTAAATTTAATATCATATTATCATTGCATGATATCAGTCTGAATTTTTTAGAATTTCAATATGAAACCTCTAATTTACTACGCTCATTCCGCGCAAGACGAACTCGGTAATCTCTTACCTTACGAACATTGGCAAACCTTGCAAAGCCATTCGGTCAATGTTGGGGAAATGGCGGCGGAGTTTGCTCGGGTATTTGGTGCGCAGGAACAGGCCTGCCAGACAGGACAGCTTCATGACTTAGGGAAATATTCGGAACCATTTGACCGCCGATTGCATGGTGGCCCATCAGTCGATTATGCTACCGCTGGAGTGAAAATTGCAAAAATGCTTGCTTTATAGTGGAGGTCAGAGT # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:-1.5, 6:0.25, 7:-0.39, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 103041-102809 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831915.1 Neisseria sp. HMSC064F03 Scaffold949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 103040 33 87.9 33 NNNN............................. TGTGATTAAAACAAACATCAGCAAAAACATTAT 102974 33 100.0 34 ................................. ACTTTATCAAGTCTGCTCATTTTCTTACTCCCAG 102907 33 100.0 33 ................................. GCCACGTGGCAGGCGGGCAGGAAATAAAAGCCT 102841 33 87.9 0 T.............................NNN | ========== ====== ====== ====== ================================= ================================== ================== 4 33 93.9 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGAAACGCGGCGCGGTTGCCTACGCTTGGTTCTGGGGCTCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAGCCGAAATCAAACCGATATTTTGAACCGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGAAAATTAGATTCTATGCTTTATGCCTTGTTATGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGCCAATCTTCGCCAAGCTTCCCATACTTCTTGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATTTTTGATTTCCTTGTTTATCAAGTGTTTAAAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGTCAAGCAGTTTGCCGATTGTCTTGGCTTTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTATCTGTACGGTTAAGACTAAACCTAAAGATGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTATCGCATATCCTTTTATCTTTCGTGGATTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACGAAGCAGAATTTAAAGGCACAGCGGTGTTGGCCTGGGCTGTGTGTTGAAACTCCAGCAACTACGAATTCTATGCAGACCTATTCCGTCAGCCACCTGAAGGTGGCTGTATGTTCAAATATCGTCCAAGCAGGCCACTTTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCAGTGGAGGATATTAGAAGCAAGTTATAAAGATTAATAAATGACAATGCCGTCTGAAAAAGTT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 103568-103200 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831915.1 Neisseria sp. HMSC064F03 Scaffold949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 103567 33 90.9 34 NNN.............................. GCGGCGCGGTTGCCTACGCTTGGTTCTGGGGCTC 103500 33 97.0 32 T................................ AATAGCCGAAATCAAACCGATATTTTGAACCG 103435 33 100.0 35 ................................. AGAAAATTAGATTCTATGCTTTATGCCTTGTTATG 103367 33 97.0 34 A................................ CGCCAATCTTCGCCAAGCTTCCCATACTTCTTGG 103300 33 100.0 35 ................................. CATTTTTGATTTCCTTGTTTATCAAGTGTTTAAAA 103232 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= =================================== ================== 6 33 97.0 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGTGTGTTGAAACGGTCAGTTCGGTGTTCATCAACTTCCAATGTCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATGGATTGAATTGAGGAGGAGAAATTGCAAACAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACAAATGGCGTAGGGTTTGCATCAATAGAAGGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTATAAGAATTATCTGATACAGAACGCGCCCACGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCGTCAAGCAGTTTGCCGATTGTCTTGGCTTTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTGATTAAAACAAACATCAGCAAAAACATTATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTTTATCAAGTCTGCTCATTTTCTTACTCCCAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCACGTGGCAGGCGGGCAGGAAATAAAAGCCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 4 103895-103663 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831915.1 Neisseria sp. HMSC064F03 Scaffold949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 103894 33 93.9 33 NN............................... ATGGATTGAATTGAGGAGGAGAAATTGCAAACA 103828 33 97.0 33 A................................ TACAAATGGCGTAGGGTTTGCATCAATAGAAGG 103762 33 100.0 34 ................................. CTATAAGAATTATCTGATACAGAACGCGCCCACG 103695 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= ================================== ================== 4 33 96.2 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGTGTGTTGAAACTACTGAAAAGAAAGACGGCGAATCATCAAGCCCTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACAACAATTTCGGAATCTGACATTCCCAGTTGCAACATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACAGGTGATGTAGGGATATTTTGAGAACTTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTCAGTTCGGTGTTCATCAACTTCCAATGTCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCGGCGCGGTTGCCTACGCTTGGTTCTGGGGCTCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAGCCGAAATCAAACCGATATTTTGAACCGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGAAAATTAGATTCTATGCTTTATGCCTTGTTATGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGCCAATCTTCGCCAAGCTTCCCATACTTCTTGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATTTTTGATTTCCTTGTTTATCAAGTGTTTAAAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGTCAAGCAGTTTGCCGATTGTCTTGGCTTTTGCCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 104481-104314 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV831915.1 Neisseria sp. HMSC064F03 Scaffold949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 104480 33 97.0 34 T................................ AGCCTGTTCTGAATAAAAAAGAGCCTATTTCGCA 104413 33 100.0 34 ................................. TACTGAAAAGAAAGACGGCGAATCATCAAGCCCT 104346 33 93.9 0 A...............................N | ========== ====== ====== ====== ================================= ================================== ================== 3 33 97.0 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCTGAAGGACCGGCAAGGCTACGGCGCGTGGCAAAATTGTGTCTGGACTACGGCGTGCGCGTGCAATATTCAGTGTTTGAATGCGACATCGCGCCCGATCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCTGAAACCGACAGCCTGCGCTTTTACCATCTGGGTAGCAAATGGCGGCGCAAAGTGGAACACCATGGCGCAAAACCGTCGGTGGATGTGTTTAAGGATACCTTGATTGTGTGAATCGCCAACCTGAGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTTGGATTGTTCTTTAACAATCAGGATATTGCGAATGCAGGTGTAACAGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTCGGGAGCTTAGCGAAATCGGGGCTATGAAACCTGACAGAGCAAGGCTTTTGAGAGGGGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACAACAATTTCGGAATCTGACATTCCCAGTTGCAACATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACAGGTGATGTAGGGATATTTTGAGAACTTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTCAGTTCGGTGTTCATCAACTTCCAATGTCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATGGATTGAATTGAGGAGGAGAAATTGCAAACAACCAGCCGCCTTCGG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //