Array 1 129350-127873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAS010000002.1 Salmonella enterica strain 185 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 129349 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 129288 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 129226 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 129165 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 129104 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 129043 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 128982 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 128921 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 128860 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 128799 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 128738 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 128677 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 128616 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 128554 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 128451 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 128390 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 128329 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 128268 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 128207 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 128146 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 128085 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 128024 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 127963 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 127902 29 96.6 0 A............................ | A [127875] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 147097-145482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXAS010000002.1 Salmonella enterica strain 185 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147096 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 147035 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 146974 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 146913 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 146852 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 146791 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 146730 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 146669 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 146608 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 146547 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 146486 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 146425 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 146364 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 146303 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 146242 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 146181 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 146120 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 146059 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 145997 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 145936 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 145875 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 145814 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 145753 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 145692 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 145631 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 145570 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 145509 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //